Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Forward (+)

68518494 .. 68520581

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG474000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCAGAAATATTAAACAGCAGCTGCGCCTCACAAGTCATAACATGCAAAGCGGCGGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGAGATACAAGTAGAGCCACCACAAAAGTGTGAAGTTCGTGTCAAGATGCTGTATGCCAGTCTCTGTCACACTGACATCGTCATCTCCAAAGGATACCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTTGGTGTGGTAGAAAGCGTCGGGGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTTTGTTTCAGAGTGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTGACCTTTAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGAACAAAAGATGCTGTACCACCTCTTTTCGTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAACTGGGGTGCTCATGGTACAACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGATCAACTGTTGCCGTTATTGGTCTCGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCAGCTAGGATCATTGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGAGAATCACCAATCTCAACATGATCAAGATCATAACAAATCAGTTTCTGAGCTCATCAAAGACTGCACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCTTTCATCAATGAAGCCCTAGTAGCCACAAAAATGGGTAAAGGAACAGCAGTCGTAATAGGAACCTCAAGTTCACCAACTGTTCAAATTGATTTTCTCTCCCTAATGAGTGGCAGAACCTTGAAAGGGTCCATGTTTGGAGGGCTCAGAGCGAAAACCGACCTTCCCATTCTAATCAACAAATGCATGAATAAGGAAATGCAACTGGATGAACTCTTGACTCATGAAGTTCCTCTCACAGATATTAACCAAGCACTTGAACTCTTAAAACAGCCGGAGTGTGTGAAGGTTCTGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

399

Amino Acids

43.37

Weight (kDa)

5.55

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	41 - 171	4.4e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	219 - 350	2.3e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	773
AccI	GTMKAC	2 cut(s)	416, 717
AccII	CGCG	1 cut(s)	210
AciI	CCGC	3 cut(s)	53, 56, 384
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	2 cut(s)	634, 713
AfaI	GTAC	4 cut(s)	403, 443, 476, 532
AfiI	CCNNNNNNNGG	3 cut(s)	517, 591, 1020
AgsI	TTSAA	6 cut(s)	277, 408, 620, 980, 1018, 1154
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AleI	CACNNNNGTG	1 cut(s)	118
AluBI	AGCT	7 cut(s)	24, 508, 561, 611, 701, 752, 832
AluI	AGCT	7 cut(s)	24, 508, 561, 611, 701, 752, 832
Alw21I	GWGCWC	4 cut(s)	461, 526, 834, 884
Alw26I	GTCTC	3 cut(s)	158, 279, 653
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	634, 713
AlwNI	CAGNNNCTG	3 cut(s)	24, 156, 827
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	3 cut(s)	21, 24, 698
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	468, 1023
AsuHPI	GGTGA	2 cut(s)	779, 960
AsuNHI	GCTAGC	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	468, 1023
BaeGI	GKGCMC	1 cut(s)	884
BaeI	ACNNNNGTAYC	2 cut(s)	287, 320
BanII	GRGCYC	3 cut(s)	598, 834, 1041
Bbv12I	GWGCWC	4 cut(s)	461, 526, 834, 884
BbvI	GCAGC	3 cut(s)	11, 33, 710
BccI	CCATC	2 cut(s)	392, 845
BceAI	ACGGC	1 cut(s)	623
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	2 cut(s)	802, 1188
BcoDI	GTCTC	3 cut(s)	158, 279, 653
BfaI	CTAG	4 cut(s)	558, 684, 702, 914
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	22, 25, 54, 699
BlsI	GCNGC	4 cut(s)	23, 26, 55, 700
Bme18I	GGWCC	2 cut(s)	468, 1023
BmgT120I	GGNCC	2 cut(s)	468, 1023
BmiI	GGNNCC	3 cut(s)	597, 958, 1024
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	129, 426, 902
BmtI	GCTAGC	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	946
BsaBI	GATNNNNATC	1 cut(s)	807
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	599
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	517, 591, 1020
Bse1I	ACTGG	4 cut(s)	150, 521, 889, 1104
Bse8I	GATNNNNATC	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	1 cut(s)	1108
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	3 cut(s)	517, 591, 1020
BseMII	CTCAG	3 cut(s)	771, 819, 1054
BseNI	ACTGG	4 cut(s)	150, 521, 889, 1104
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	3 cut(s)	11, 33, 710
BsgI	GTGCAG	2 cut(s)	717, 829
Bsh1236I	CGCG	1 cut(s)	210
BsiHKAI	GWGCWC	4 cut(s)	461, 526, 834, 884
BsiSI	CCGG	2 cut(s)	585, 1169
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	3 cut(s)	517, 591, 1020
BsmAI	GTCTC	3 cut(s)	158, 279, 653
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	2 cut(s)	329, 693
Bso31I	GGTCTC	1 cut(s)	653
Bsp1286I	GDGCHC	6 cut(s)	461, 526, 598, 834, 884, 1041
Bsp143I	GATC	5 cut(s)	626, 705, 802, 808, 1188
BspACI	CCGC	3 cut(s)	53, 56, 384
BspCNI	CTCAG	3 cut(s)	772, 820, 1053
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	3 cut(s)	597, 958, 1024
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	634, 713
BspTNI	GGTCTC	1 cut(s)	653
BsrI	ACTGG	4 cut(s)	150, 521, 889, 1104
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	5 cut(s)	626, 705, 802, 808, 1188
BssT1I	CCWWGG	1 cut(s)	599
Bst4CI	ACNGT	3 cut(s)	421, 634, 976
Bst6I	CTCTTC	2 cut(s)	72, 87
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	4 cut(s)	612, 780, 828, 1040
BstF5I	GGATG	1 cut(s)	1108
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	629, 708, 805, 811, 1191
BstMAI	GTCTC	3 cut(s)	158, 279, 653
BstMBI	GATC	5 cut(s)	626, 705, 802, 808, 1188
BstMWI	GCNNNNNNNGC	5 cut(s)	324, 333, 342, 879, 917
BstNSI	RCATGY	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	11, 33, 710
BstXI	CCANNNNNNTGG	1 cut(s)	928
BsuI	GTATCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	1108
BtsIMutI	CAGTG	2 cut(s)	162, 882
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	3 cut(s)	24, 156, 827
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	468, 1023
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	4 cut(s)	402, 442, 475, 531
CviQI	GTAC	4 cut(s)	402, 442, 475, 531
DdeI	CTNAG	4 cut(s)	612, 780, 828, 1040
DpnI	GATC	5 cut(s)	628, 707, 804, 810, 1190
DpnII	GATC	5 cut(s)	626, 705, 802, 808, 1188
Eam1104I	CTCTTC	2 cut(s)	72, 87
EarI	CTCTTC	2 cut(s)	72, 87
Ecl136II	GAGCTC	1 cut(s)	832
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	3 cut(s)	598, 834, 1041
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	2 cut(s)	468, 1023
Eco53kI	GAGCTC	1 cut(s)	832
EcoICRI	GAGCTC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	1082
EcoT38I	GRGCYC	3 cut(s)	598, 834, 1041
ErhI	CCWWGG	1 cut(s)	599
FaqI	GGGAC	1 cut(s)	535
FbaI	TGATCA	2 cut(s)	802, 1188
FblI	GTMKAC	2 cut(s)	416, 717
Fnu4HI	GCNGC	4 cut(s)	22, 25, 54, 699
FokI	GGATG	1 cut(s)	1115
FriOI	GRGCYC	3 cut(s)	598, 834, 1041
Fsp4HI	GCNGC	4 cut(s)	22, 25, 54, 699
FspBI	CTAG	4 cut(s)	558, 684, 702, 914
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	4 cut(s)	22, 25, 54, 699
HapII	CCGG	2 cut(s)	585, 1169
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	4 cut(s)	375, 417, 487, 718
HindII	GTYRAC	4 cut(s)	375, 417, 487, 718
HinfI	GANTC	3 cut(s)	576, 784, 1114
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	585, 1169
HphI	GGTGA	2 cut(s)	779, 960
Hpy166II	GTNNAC	7 cut(s)	262, 375, 417, 487, 718, 882, 968
Hpy188I	TCNGA	6 cut(s)	7, 313, 472, 829, 1043, 1188
Hpy188III	TCNNGA	7 cut(s)	136, 292, 408, 806, 1111, 1118, 1192
Hpy8I	GTNNAC	7 cut(s)	262, 375, 417, 487, 718, 882, 968
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	598, 1067, 1174
HpyCH4III	ACNGT	3 cut(s)	421, 634, 976
HpyCH4IV	ACGT	2 cut(s)	302, 489
HpyCH4V	TGCA	9 cut(s)	48, 84, 691, 698, 846, 882, 893, 1080, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	324, 333, 342, 879, 917
HpyF3I	CTNAG	4 cut(s)	612, 780, 828, 1040
HpySE526I	ACGT	2 cut(s)	302, 489
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	2 cut(s)	802, 1188
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	626, 705, 802, 808, 1188
LmnI	GCTCC	3 cut(s)	464, 513, 601
Lsp1109I	GCAGC	3 cut(s)	11, 33, 710
LweI	GCATC	3 cut(s)	129, 426, 902
MaeI	CTAG	4 cut(s)	558, 684, 702, 914
MaeII	ACGT	2 cut(s)	302, 489
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	628, 707, 804, 810, 1190
MboI	GATC	5 cut(s)	626, 705, 802, 808, 1188
MboII	GAAGA	3 cut(s)	89, 104, 266
MhlI	GDGCHC	6 cut(s)	461, 526, 598, 834, 884, 1041
MluCI	AATT	4 cut(s)	192, 331, 493, 981
MlyI	GAGTC	1 cut(s)	1108
MmeI	TCCRAC	2 cut(s)	375, 640
Mph1103I	ATGCAT	1 cut(s)	1082
MseI	TTAA	4 cut(s)	14, 486, 1140, 1160
MslI	CAYNNNNRTG	2 cut(s)	118, 926
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	585, 1169
Mva1269I	GAATGC	2 cut(s)	329, 693
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	5 cut(s)	324, 333, 342, 879, 917
NdeII	GATC	5 cut(s)	626, 705, 802, 808, 1188
NheI	GCTAGC	1 cut(s)	557
NlaIV	GGNNCC	3 cut(s)	597, 958, 1024
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	1082
NspI	RCATGY	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	118
PagI	TCATGA	1 cut(s)	1117
PctI	GAATGC	2 cut(s)	329, 693
PfeI	GAWTC	2 cut(s)	576, 784
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	23, 26, 55, 700
PleI	GAGTC	1 cut(s)	1108
PpsI	GAGTC	1 cut(s)	1108
PsiI	TTATAA	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	834
Psp1406I	AACGTT	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	597, 958, 1024
PspPI	GGNCC	2 cut(s)	468, 1023
PstNI	CAGNNNCTG	3 cut(s)	24, 156, 827
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	4 cut(s)	403, 443, 476, 532
RsaNI	GTAC	4 cut(s)	402, 442, 475, 531
RseI	CAYNNNNRTG	2 cut(s)	118, 926
SacI	GAGCTC	1 cut(s)	834
SalI	GTCGAC	2 cut(s)	415, 716
SaqAI	TTAA	4 cut(s)	14, 486, 1140, 1160
SatI	GCNGC	4 cut(s)	22, 25, 54, 699
Sau3AI	GATC	5 cut(s)	626, 705, 802, 808, 1188
Sau96I	GGNCC	2 cut(s)	468, 1023
SchI	GAGTC	1 cut(s)	1108
SduI	GDGCHC	6 cut(s)	461, 526, 598, 834, 884, 1041
SfaNI	GCATC	3 cut(s)	129, 426, 902
SinI	GGWCC	2 cut(s)	468, 1023
SmiMI	CAYNNNNRTG	2 cut(s)	118, 926
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	4 cut(s)	192, 331, 493, 981
SsiI	CCGC	3 cut(s)	53, 56, 384
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	4 cut(s)	558, 684, 702, 914
SstI	GAGCTC	1 cut(s)	834
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	3 cut(s)	421, 634, 976
TaiI	ACGT	2 cut(s)	305, 492
TaqI	TCGA	3 cut(s)	396, 416, 717
TasI	AATT	4 cut(s)	192, 331, 493, 981
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	576, 784
Tru1I	TTAA	4 cut(s)	14, 486, 1140, 1160
Tru9I	TTAA	4 cut(s)	14, 486, 1140, 1160
TscAI	CASTG	2 cut(s)	169, 889
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	21, 24, 698
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	746, 889, 921, 1097, 1119, 1134
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	169, 889
Tth111I	GACNNNGTC	1 cut(s)	170
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	468, 1023
XceI	RCATGY	1 cut(s)	48
XmiI	GTMKAC	2 cut(s)	416, 717
XspI	CTAG	4 cut(s)	558, 684, 702, 914
Zsp2I	ATGCAT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.