Rroxscaffold_4G00318470

Alcohol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
44627611 .. 44642877
15267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318470.1

Sequence Viewer

Length: 462 bp
ATGCGAGAATTGCTTGTCGAGCAAGTCCAACCCGTGCTGAAATATCCATTCACCTTGAGTGGTCTAATGCTCGATGGTACTTCAAGAATGTCGATCGTCAAGGAGAAAAAGATGCTGTACCACCTCTTTTCTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAAATTCCTTGTCAAGCTCCACAAATGGGGTGCTCATCGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTTATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGTTGGTGGGAACGGAACTATTGGTATTGAGGCGATCTTTGCTTCGGTGGTTGAGAGCAAAGCCTTCGTGTTAGGGGTTGGGAACAAAAGTACTCTTTCTTTTCTTTGCTCTCCACTTCGGCCAGCTACTCATTCTCTCGCACATGCTCCGGACAACACTTTCCTCATTTTCCTCTAA

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

9.27

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 433
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 5 cut(s) 79, 119, 152, 208, 376
AfiI CCNNNNNNNGG 2 cut(s) 193, 267
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 3 cut(s) 184, 237, 410
AluI AGCT 3 cut(s) 184, 237, 410
Alw21I GWGCWC 1 cut(s) 202
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 43
AsuNHI GCTAGC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 202
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BfaI CTAG 1 cut(s) 234
BmcAI AGTACT 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 102
BmtI GCTAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 260, 433
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 267
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 193, 267
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 406
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 261, 434
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 193, 267
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 202, 274
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 2 cut(s) 93, 318
BspANI GGCC 1 cut(s) 406
BspEI TCCGGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 273
BspOI GCTAGC 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 2 cut(s) 93, 318
BssT1I CCWWGG 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 235, 408
BstKTI GATC 2 cut(s) 96, 321
BstMBI GATC 2 cut(s) 93, 318
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 10, 19, 323
BstNSI RCATGY 1 cut(s) 431
BsuRI GGCC 1 cut(s) 406
Cac8I GCNNGC 2 cut(s) 235, 408
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 5 cut(s) 78, 118, 151, 207, 375
CviAII CATG 3 cut(s) 141, 154, 428
CviJI RGCY 6 cut(s) 184, 237, 272, 347, 406, 410
CviKI_1 RGCY 6 cut(s) 184, 237, 272, 347, 406, 410
CviQI GTAC 5 cut(s) 78, 118, 151, 207, 375
DpnI GATC 2 cut(s) 95, 320
DpnII GATC 2 cut(s) 93, 318
EaeI YGGCCR 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 3 cut(s) 144, 157, 431
FaiI YATR 4 cut(s) 142, 155, 247, 429
FaqI GGGAC 1 cut(s) 211
FatI CATG 3 cut(s) 140, 153, 427
FriOI GRGCYC 1 cut(s) 274
FspBI CTAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 261, 434
Hin1II CATG 3 cut(s) 144, 157, 431
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 252
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 2 cut(s) 261, 434
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 84, 434
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 274, 358
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 19, 323
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 144, 157, 431
Kpn2I TCCGGA 1 cut(s) 433
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 93, 318
LmnI GCTCC 4 cut(s) 140, 189, 277, 436
LpnPI CCDG 3 cut(s) 274, 420, 447
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 95, 320
MboI GATC 2 cut(s) 93, 318
MhlI GDGCHC 2 cut(s) 202, 274
MluCI AATT 2 cut(s) 8, 170
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 5 cut(s) 134, 231, 251, 307, 458
MroI TCCGGA 1 cut(s) 433
MseI TTAA 1 cut(s) 162
MspI CCGG 2 cut(s) 261, 434
MwoI GCNNNNNNNGC 3 cut(s) 10, 19, 323
NdeII GATC 2 cut(s) 93, 318
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 3 cut(s) 144, 157, 431
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 1 cut(s) 431
PfeI GAWTC 1 cut(s) 252
Ple19I CGATCG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 144
PvuI CGATCG 1 cut(s) 96
RsaI GTAC 5 cut(s) 79, 119, 152, 208, 376
RsaNI GTAC 5 cut(s) 78, 118, 151, 207, 375
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 2 cut(s) 93, 318
Sau96I GGNCC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 376
SduI GDGCHC 2 cut(s) 202, 274
SetI ASST 7 cut(s) 56, 126, 168, 186, 223, 239, 412
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 8, 170
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 18, 72, 92
TasI AATT 2 cut(s) 8, 170
TatI WGTACW 2 cut(s) 150, 374
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 431
XspI CTAG 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.