Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Forward (+)

2101889 .. 2104815

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCAAAAACAAGCAGCAGCTGCCCCTTGCAAGTCATAACATGCAAAGCGGCTGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGAGATACAGGTAGAGCCACCACAGAAGTTTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCCTCATGTCCAAAGGACGCCCAATTCCTCTTTTCCCTCGCGTTCTTGGCCATGAGGGCGTCGGTGTGGTAGAGAGCGTCGGAGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTATGTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCTTGAAATATCCGTTTACCTGGAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGCTGTACCACCTCTTTTCTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAAATGGGGTCCTCATCGTACTACTACACCACCTCTGTCGCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCAATCTGAACATGATCACGATCATGACAAATCAGTTTCTAAGCTCATCAAAGACTCTACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGTATATCCACACACATGTATACACCACAAAATGTATACATATTATTCATGGTCGGTACATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

330

Amino Acids

36.39

Weight (kDa)

6.39

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 170	5.3e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	218 - 308	1.4e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	381
AccI	GTMKAC	4 cut(s)	413, 714, 946, 962
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	50, 381
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	2 cut(s)	184, 225
AfaI	GTAC	5 cut(s)	400, 440, 473, 529, 984
AfiI	CCNNNNNNNGG	2 cut(s)	514, 588
AflIII	ACRYGT	1 cut(s)	941
AgsI	TTSAA	5 cut(s)	122, 274, 361, 405, 617
AjnI	CCWGG	1 cut(s)	374
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	6 cut(s)	21, 505, 558, 608, 749, 829
AluI	AGCT	6 cut(s)	21, 505, 558, 608, 749, 829
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	2 cut(s)	155, 276
Alw44I	GTGCAC	1 cut(s)	877
AlwNI	CAGNNNCTG	2 cut(s)	21, 153
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	3 cut(s)	15, 18, 21
AspS9I	GGNCC	2 cut(s)	465, 518
AsuHPI	GGTGA	1 cut(s)	776
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	465, 518
BaeGI	GKGCMC	1 cut(s)	881
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	881
BbvI	GCAGC	3 cut(s)	8, 27, 30
BccI	CCATC	2 cut(s)	389, 842
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	155, 276
BfaI	CTAG	3 cut(s)	555, 681, 699
BfmI	CTRYAG	1 cut(s)	843
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	4 cut(s)	16, 19, 22, 51
BlsI	GCNGC	4 cut(s)	17, 20, 23, 52
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	2 cut(s)	465, 518
BmgT120I	GGNCC	2 cut(s)	465, 518
BmiI	GGNNCC	3 cut(s)	519, 594, 916
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	4 cut(s)	126, 423, 704, 899
BmtI	GCTAGC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	2 cut(s)	184, 225
BsaJI	CCNNGG	2 cut(s)	596, 910
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 588
Bse1I	ACTGG	2 cut(s)	147, 886
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	596, 910
BseGI	GGATG	2 cut(s)	165, 890
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	2 cut(s)	514, 588
BseNI	ACTGG	2 cut(s)	147, 886
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	3 cut(s)	8, 27, 30
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	514, 588
BsmAI	GTCTC	2 cut(s)	155, 276
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	3 cut(s)	317, 326, 690
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	595, 881
Bsp143I	GATC	2 cut(s)	799, 805
BspACI	CCGC	2 cut(s)	50, 381
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	3 cut(s)	519, 594, 916
BspOI	GCTAGC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	147, 886
BssECI	CCNNGG	2 cut(s)	596, 910
BssMI	GATC	2 cut(s)	799, 805
BssNAI	GTATAC	2 cut(s)	947, 963
BssNI	GRCGYC	2 cut(s)	184, 225
BssT1I	CCWWGG	2 cut(s)	596, 910
Bst1107I	GTATAC	2 cut(s)	947, 963
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	418, 631
Bst6I	CTCTTC	2 cut(s)	69, 84
BstACI	GRCGYC	2 cut(s)	184, 225
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	552, 556
BstDEI	CTNAG	2 cut(s)	609, 825
BstF5I	GGATG	2 cut(s)	165, 890
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	802, 808
BstMAI	GTCTC	2 cut(s)	155, 276
BstMBI	GATC	2 cut(s)	799, 805
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 213, 222, 321, 330, 339, 876, 914
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	3 cut(s)	45, 945, 989
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	8, 27, 30
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstZ17I	GTATAC	2 cut(s)	947, 963
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	165, 890
BtsIMutI	CAGTG	2 cut(s)	159, 879
Cac8I	GCNNGC	2 cut(s)	552, 556
CaiI	CAGNNNCTG	2 cut(s)	21, 153
CciI	TCATGA	1 cut(s)	808
Cfr13I	GGNCC	2 cut(s)	465, 518
CseI	GACGC	3 cut(s)	192, 214, 232
Csp6I	GTAC	5 cut(s)	399, 439, 472, 528, 983
CviQI	GTAC	5 cut(s)	399, 439, 472, 528, 983
DdeI	CTNAG	2 cut(s)	609, 825
DpnI	GATC	2 cut(s)	801, 807
DpnII	GATC	2 cut(s)	799, 805
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	69, 84
EarI	CTCTTC	2 cut(s)	69, 84
Eco130I	CCWWGG	2 cut(s)	596, 910
Eco24I	GRGCYC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	465, 518
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	596, 910
EcoT22I	ATGCAT	1 cut(s)	991
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	596, 910
FaqI	GGGAC	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	4 cut(s)	413, 714, 946, 962
Fnu4HI	GCNGC	4 cut(s)	16, 19, 22, 51
FokI	GGATG	2 cut(s)	152, 877
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	4 cut(s)	16, 19, 22, 51
FspBI	CTAG	3 cut(s)	555, 681, 699
GluI	GCNGC	4 cut(s)	16, 19, 22, 51
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	3 cut(s)	192, 214, 232
Hin1I	GRCGYC	2 cut(s)	184, 225
HincII	GTYRAC	4 cut(s)	414, 484, 627, 715
HindII	GTYRAC	4 cut(s)	414, 484, 627, 715
HinfI	GANTC	2 cut(s)	573, 839
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	9 cut(s)	259, 372, 414, 484, 627, 715, 879, 947, 963
Hpy188I	TCNGA	4 cut(s)	248, 310, 469, 793
Hpy188III	TCNNGA	5 cut(s)	133, 289, 405, 803, 809
Hpy8I	GTNNAC	9 cut(s)	259, 372, 414, 484, 627, 715, 879, 947, 963
Hpy99I	CGWCG	2 cut(s)	230, 248
HpyAV	CCTTC	2 cut(s)	595, 904
HpyCH4III	ACNGT	2 cut(s)	418, 631
HpyCH4IV	ACGT	2 cut(s)	299, 486
HpyCH4V	TGCA	8 cut(s)	31, 45, 81, 688, 695, 879, 890, 989
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 213, 222, 321, 330, 339, 876, 914
HpyF3I	CTNAG	2 cut(s)	609, 825
HpySE526I	ACGT	2 cut(s)	299, 486
Hsp92I	GRCGYC	2 cut(s)	184, 225
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	799, 805
LmnI	GCTCC	5 cut(s)	378, 461, 510, 598, 914
LpnPI	CCDG	9 cut(s)	83, 160, 324, 361, 365, 388, 595, 789, 867
Lsp1109I	GCAGC	3 cut(s)	8, 27, 30
LweI	GCATC	4 cut(s)	126, 423, 704, 899
MaeI	CTAG	3 cut(s)	555, 681, 699
MaeII	ACGT	2 cut(s)	299, 486
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	801, 807
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	2 cut(s)	799, 805
MboII	GAAGA	3 cut(s)	86, 101, 263
MhlI	GDGCHC	2 cut(s)	595, 881
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	3 cut(s)	189, 328, 490
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	3 cut(s)	226, 372, 637
Mox20I	TGGCCA	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	991
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	4 cut(s)	170, 807, 923, 940
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	3 cut(s)	317, 326, 690
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	8 cut(s)	21, 213, 222, 321, 330, 339, 876, 914
NdeII	GATC	2 cut(s)	799, 805
NheI	GCTAGC	1 cut(s)	554
NlaIV	GGNNCC	3 cut(s)	519, 594, 916
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	3 cut(s)	45, 945, 989
PagI	TCATGA	1 cut(s)	808
PciI	ACATGT	1 cut(s)	941
PctI	GAATGC	3 cut(s)	317, 326, 690
PfeI	GAWTC	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	17, 20, 23, 52
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PpuMI	RGGWCCY	1 cut(s)	518
PscI	ACATGT	1 cut(s)	941
PsiI	TTATAA	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	3 cut(s)	519, 594, 916
PspPI	GGNCC	2 cut(s)	465, 518
PspPPI	RGGWCCY	1 cut(s)	518
PstNI	CAGNNNCTG	2 cut(s)	21, 153
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	5 cut(s)	400, 440, 473, 529, 984
RsaNI	GTAC	5 cut(s)	399, 439, 472, 528, 983
RseI	CAYNNNNRTG	4 cut(s)	170, 807, 923, 940
SalI	GTCGAC	2 cut(s)	412, 713
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	16, 19, 22, 51
Sau3AI	GATC	2 cut(s)	799, 805
Sau96I	GGNCC	2 cut(s)	465, 518
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	2 cut(s)	595, 881
SfaNI	GCATC	4 cut(s)	126, 423, 704, 899
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	2 cut(s)	465, 518
SmiMI	CAYNNNNRTG	4 cut(s)	170, 807, 923, 940
Sse9I	AATT	3 cut(s)	189, 328, 490
SsiI	CCGC	2 cut(s)	50, 381
SspMI	CTAG	3 cut(s)	555, 681, 699
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	2 cut(s)	596, 910
TaaI	ACNGT	2 cut(s)	418, 631
TaiI	ACGT	2 cut(s)	302, 489
TaqI	TCGA	3 cut(s)	393, 413, 714
TasI	AATT	3 cut(s)	189, 328, 490
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	573
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	166, 886
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	15, 18, 21
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	4 cut(s)	743, 886, 918, 963
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	166, 886
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	465, 518
XceI	RCATGY	3 cut(s)	45, 945, 989
XmiI	GTMKAC	4 cut(s)	413, 714, 946, 962
XspI	CTAG	3 cut(s)	555, 681, 699
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.