Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Reverse (-)

66775972 .. 66778994

Gene Structure 3023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAATGGACAAGAGCAGCAGCCCCATTCCACCAAAAACAGACAAGCAATTAGGTTGAGAGTATCTGCAGGTATGTCACAAACAAGCAGCAGCTGCGTCTCGCAAGTTATAACATGCAAAGCGGCTGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGAGATACAAGTAGAGCCACCACACAAGTGTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACCGACATCCTCATCTCCAAAGGATTTCCAATTCCTCTTTTCCCTCGCGTTCTTGGACACGAGGGCGTCGGTGTCGTAGAGAGCGTCGGAGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTTTGTTTCAGAATGCCAAGAATGCGAGTATTGCTTGTCAGGCAAGACCAACCTGTGCCTGAAATATCCGCTCACCTCGAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGGGCAAAAGATGCTGCACCACCTCTTTACTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAACTCCACAACTGGGGTGCTCATGGTATTACTACACCACCTCTATCCCACGCAAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTTCTTGGAAGGAAGCTAAGATCGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAATTGGGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCTATCTGAACATGATCAAGATCATGACAAATCAGTTTCTAAGCTCATTAAAGACTCTACAGATGGAACGGGTGTAGATTATTGCATTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGGTAAAGGAACAGCAGTTGTGCTAGGAGCCTCAGTAACAACCGTTCAAATTGATTTTCTCTCCCTGTTGAGCGGCAGAACCTTGAAAGGGTCCCTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAATTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTAGATATTAACCAAGCATTTGAAGTCTTAAAGCAGCCAGATTGTGTGAAGGTTCTGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

422

Amino Acids

45.52

Weight (kDa)

6.24

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	65 - 194	6.4e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	242 - 372	5.3e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	110, 842
Acc36I	ACCTGC	1 cut(s)	59
AccBSI	CCGCTC	3 cut(s)	442, 453, 1071
AccI	GTMKAC	2 cut(s)	485, 786
AccII	CGCG	1 cut(s)	279
AciI	CCGC	4 cut(s)	122, 440, 453, 1071
AclI	AACGTT	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	472, 545
AfiI	CCNNNNNNNGG	3 cut(s)	586, 660, 1086
AgsI	TTSAA	5 cut(s)	346, 477, 1046, 1084, 1220
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AleI	CACNNNNGTG	2 cut(s)	187, 189
AluBI	AGCT	5 cut(s)	93, 630, 680, 821, 901
AluI	AGCT	5 cut(s)	93, 630, 680, 821, 901
Alw21I	GWGCWC	2 cut(s)	595, 953
Alw26I	GTCTC	4 cut(s)	103, 227, 348, 1109
Alw44I	GTGCAC	1 cut(s)	949
AlwNI	CAGNNNCTG	2 cut(s)	93, 225
Ama87I	CYCGRG	1 cut(s)	448
ApaLI	GTGCAC	1 cut(s)	949
ApeKI	GCWGC	7 cut(s)	16, 19, 87, 90, 93, 508, 1231
AspS9I	GGNCC	2 cut(s)	537, 1089
AsuHPI	GGTGA	2 cut(s)	436, 848
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	537, 1089
BaeGI	GKGCMC	1 cut(s)	953
BaeI	ACNNNNGTAYC	2 cut(s)	356, 389
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	595, 953
BbvI	GCAGC	7 cut(s)	28, 31, 80, 99, 102, 495, 1243
BccI	CCATC	2 cut(s)	461, 914
BclI	TGATCA	2 cut(s)	871, 1254
BcoDI	GTCTC	4 cut(s)	103, 227, 348, 1109
BfaI	CTAG	3 cut(s)	753, 771, 1022
BfmI	CTRYAG	2 cut(s)	66, 915
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	9 cut(s)	17, 20, 88, 91, 94, 123, 509, 1072, 1232
BlsI	GCNGC	9 cut(s)	18, 21, 89, 92, 95, 124, 510, 1073, 1233
Bme18I	GGWCC	2 cut(s)	537, 1089
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	537, 1089
BmiI	GGNNCC	4 cut(s)	988, 1027, 1090, 1091
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	4 cut(s)	198, 495, 776, 971
BmuI	ACTGGG	1 cut(s)	595
BsaBI	GATNNNNATC	1 cut(s)	876
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	1 cut(s)	982
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	6 cut(s)	312, 342, 345, 375, 1017, 1047
Bsc4I	CCNNNNNNNGG	3 cut(s)	586, 660, 1086
Bse1I	ACTGG	3 cut(s)	219, 590, 958
Bse8I	GATNNNNATC	1 cut(s)	876
BseDI	CCNNGG	1 cut(s)	982
BseGI	GGATG	3 cut(s)	237, 962, 1174
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	3 cut(s)	586, 660, 1086
BseMII	CTCAG	1 cut(s)	1044
BseNI	ACTGG	3 cut(s)	219, 590, 958
BseSI	GKGCMC	1 cut(s)	953
BseXI	GCAGC	7 cut(s)	28, 31, 80, 99, 102, 495, 1243
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	595, 953
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	1075
BslI	CCNNNNNNNGG	3 cut(s)	586, 660, 1086
BsmAI	GTCTC	4 cut(s)	103, 227, 348, 1109
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	1075
BsmI	GAATGC	3 cut(s)	389, 398, 762
Bso31I	GGTCTC	1 cut(s)	1109
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	595, 953
Bsp143I	GATC	4 cut(s)	684, 871, 877, 1254
BspACI	CCGC	4 cut(s)	122, 440, 453, 1071
BspCNI	CTCAG	1 cut(s)	1043
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	2 cut(s)	880, 1183
BspLI	GGNNCC	4 cut(s)	988, 1027, 1090, 1091
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	1109
BsrBI	CCGCTC	3 cut(s)	442, 453, 1071
BsrI	ACTGG	3 cut(s)	219, 590, 958
BssECI	CCNNGG	1 cut(s)	982
BssMI	GATC	4 cut(s)	684, 871, 877, 1254
BssNI	GRCGYC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	982
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	490, 703, 1042
Bst6I	CTCTTC	2 cut(s)	141, 156
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	3 cut(s)	93, 505, 948
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	3 cut(s)	681, 897, 1030
BstF5I	GGATG	3 cut(s)	237, 962, 1174
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	4 cut(s)	687, 874, 880, 1257
BstMAI	GTCTC	4 cut(s)	103, 227, 348, 1109
BstMBI	GATC	4 cut(s)	684, 871, 877, 1254
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 393, 402, 411, 505, 948, 986
BstNSI	RCATGY	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	66, 915
BstSLI	GKGCMC	1 cut(s)	953
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	7 cut(s)	28, 31, 80, 99, 102, 495, 1243
BstXI	CCANNNNNNTGG	1 cut(s)	997
BtsCI	GGATG	3 cut(s)	237, 962, 1174
BtsIMutI	CAGTG	1 cut(s)	951
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	628
CaiI	CAGNNNCTG	2 cut(s)	93, 225
CciI	TCATGA	2 cut(s)	880, 1183
Cfr13I	GGNCC	2 cut(s)	537, 1089
CseI	GACGC	3 cut(s)	85, 286, 304
Csp6I	GTAC	2 cut(s)	471, 544
CviAII	CATG	9 cut(s)	114, 534, 547, 596, 639, 869, 881, 1147, 1184
CviQI	GTAC	2 cut(s)	471, 544
DdeI	CTNAG	3 cut(s)	681, 897, 1030
DpnI	GATC	4 cut(s)	686, 873, 879, 1256
DpnII	GATC	4 cut(s)	684, 871, 877, 1254
Eam1104I	CTCTTC	2 cut(s)	141, 156
EarI	CTCTTC	2 cut(s)	141, 156
Eco130I	CCWWGG	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	1109
Eco47I	GGWCC	2 cut(s)	537, 1089
Eco88I	CYCGRG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	1089
EcoT14I	CCWWGG	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	1148
ErhI	CCWWGG	1 cut(s)	982
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	9 cut(s)	117, 537, 550, 599, 642, 872, 884, 1150, 1187
FaqI	GGGAC	1 cut(s)	1075
FatI	CATG	9 cut(s)	113, 533, 546, 595, 638, 868, 880, 1146, 1183
FbaI	TGATCA	2 cut(s)	871, 1254
FblI	GTMKAC	2 cut(s)	485, 786
Fnu4HI	GCNGC	9 cut(s)	17, 20, 88, 91, 94, 123, 509, 1072, 1232
FokI	GGATG	3 cut(s)	224, 949, 1181
Fsp4HI	GCNGC	9 cut(s)	17, 20, 88, 91, 94, 123, 509, 1072, 1232
FspBI	CTAG	3 cut(s)	753, 771, 1022
GluI	GCNGC	9 cut(s)	17, 20, 88, 91, 94, 123, 509, 1072, 1232
HapII	CCGG	1 cut(s)	654
HgaI	GACGC	3 cut(s)	85, 286, 304
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	9 cut(s)	117, 537, 550, 599, 642, 872, 884, 1150, 1187
HincII	GTYRAC	4 cut(s)	486, 556, 699, 787
HindII	GTYRAC	4 cut(s)	486, 556, 699, 787
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	3 cut(s)	645, 911, 1180
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	2 cut(s)	436, 848
Hpy166II	GTNNAC	6 cut(s)	331, 486, 556, 699, 787, 951
Hpy188I	TCNGA	5 cut(s)	320, 382, 541, 865, 1254
Hpy188III	TCNNGA	8 cut(s)	205, 361, 477, 875, 881, 1177, 1184, 1258
Hpy8I	GTNNAC	6 cut(s)	331, 486, 556, 699, 787, 951
Hpy99I	CGWCG	2 cut(s)	302, 320
HpyAV	CCTTC	4 cut(s)	667, 976, 1133, 1240
HpyCH4III	ACNGT	3 cut(s)	490, 703, 1042
HpyCH4IV	ACGT	2 cut(s)	371, 558
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 393, 402, 411, 505, 948, 986
HpyF3I	CTNAG	3 cut(s)	681, 897, 1030
HpySE526I	ACGT	2 cut(s)	371, 558
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	9 cut(s)	117, 537, 550, 599, 642, 872, 884, 1150, 1187
KflI	GGGWCCC	1 cut(s)	1089
Ksp22I	TGATCA	2 cut(s)	871, 1254
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	684, 871, 877, 1254
LmnI	GCTCC	3 cut(s)	533, 986, 1025
Lsp1109I	GCAGC	7 cut(s)	28, 31, 80, 99, 102, 495, 1243
LweI	GCATC	4 cut(s)	198, 495, 776, 971
MaeI	CTAG	3 cut(s)	753, 771, 1022
MaeII	ACGT	2 cut(s)	371, 558
MaeIII	GTNAC	3 cut(s)	75, 227, 1033
MalI	GATC	4 cut(s)	686, 873, 879, 1256
MbiI	CCGCTC	3 cut(s)	442, 453, 1071
MboI	GATC	4 cut(s)	684, 871, 877, 1254
MboII	GAAGA	3 cut(s)	158, 173, 335
MfeI	CAATTG	2 cut(s)	741, 1163
MhlI	GDGCHC	2 cut(s)	595, 953
MluCI	AATT	6 cut(s)	48, 261, 562, 741, 1047, 1163
MlyI	GAGTC	2 cut(s)	905, 1174
MmeI	TCCRAC	2 cut(s)	298, 709
Mph1103I	ATGCAT	1 cut(s)	1148
MseI	TTAA	4 cut(s)	555, 906, 1206, 1226
MslI	CAYNNNNRTG	4 cut(s)	187, 189, 995, 1151
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	654
MunI	CAATTG	2 cut(s)	741, 1163
Mva1269I	GAATGC	3 cut(s)	389, 398, 762
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	7 cut(s)	93, 393, 402, 411, 505, 948, 986
NdeII	GATC	4 cut(s)	684, 871, 877, 1254
NlaIII	CATG	9 cut(s)	117, 537, 550, 599, 642, 872, 884, 1150, 1187
NlaIV	GGNNCC	4 cut(s)	988, 1027, 1090, 1091
NmuCI	GTSAC	2 cut(s)	75, 227
NsiI	ATGCAT	1 cut(s)	1148
NspI	RCATGY	1 cut(s)	117
OliI	CACNNNNGTG	2 cut(s)	187, 189
PaeR7I	CTCGAG	1 cut(s)	448
PagI	TCATGA	2 cut(s)	880, 1183
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PctI	GAATGC	3 cut(s)	389, 398, 762
PfeI	GAWTC	1 cut(s)	645
PkrI	GCNGC	9 cut(s)	18, 21, 89, 92, 95, 124, 510, 1073, 1233
PleI	GAGTC	2 cut(s)	905, 1174
PpsI	GAGTC	2 cut(s)	905, 1174
PpuMI	RGGWCCY	1 cut(s)	1089
PsiI	TTATAA	2 cut(s)	110, 842
Psp1406I	AACGTT	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	1089
PspN4I	GGNNCC	4 cut(s)	988, 1027, 1090, 1091
PspPI	GGNCC	2 cut(s)	537, 1089
PspPPI	RGGWCCY	1 cut(s)	1089
PspXI	VCTCGAGB	1 cut(s)	448
PsrI	GAACNNNNNNTAC	2 cut(s)	1026, 1058
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	2 cut(s)	93, 225
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	2 cut(s)	472, 545
RsaNI	GTAC	2 cut(s)	471, 544
RseI	CAYNNNNRTG	4 cut(s)	187, 189, 995, 1151
SalI	GTCGAC	2 cut(s)	484, 785
SaqAI	TTAA	4 cut(s)	555, 906, 1206, 1226
SatI	GCNGC	9 cut(s)	17, 20, 88, 91, 94, 123, 509, 1072, 1232
Sau3AI	GATC	4 cut(s)	684, 871, 877, 1254
Sau96I	GGNCC	2 cut(s)	537, 1089
SchI	GAGTC	2 cut(s)	905, 1174
SduI	GDGCHC	2 cut(s)	595, 953
SfaNI	GCATC	4 cut(s)	198, 495, 776, 971
SfcI	CTRYAG	2 cut(s)	66, 915
Sfr274I	CTCGAG	1 cut(s)	448
SinI	GGWCC	2 cut(s)	537, 1089
SlaI	CTCGAG	1 cut(s)	448
SmiMI	CAYNNNNRTG	4 cut(s)	187, 189, 995, 1151
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	6 cut(s)	48, 261, 562, 741, 1047, 1163
SsiI	CCGC	4 cut(s)	122, 440, 453, 1071
SspMI	CTAG	3 cut(s)	753, 771, 1022
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	3 cut(s)	490, 703, 1042
TaiI	ACGT	2 cut(s)	374, 561
TaqI	TCGA	5 cut(s)	449, 465, 485, 687, 786
TasI	AATT	6 cut(s)	48, 261, 562, 741, 1047, 1163
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	2 cut(s)	125, 1074
TfiI	GAWTC	1 cut(s)	645
Tru1I	TTAA	4 cut(s)	555, 906, 1206, 1226
Tru9I	TTAA	4 cut(s)	555, 906, 1206, 1226
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	2 cut(s)	75, 227
TseI	GCWGC	7 cut(s)	16, 19, 87, 90, 93, 508, 1231
Tsp45I	GTSAC	2 cut(s)	75, 227
TspDTI	ATGAA	7 cut(s)	17, 815, 958, 990, 1163, 1185, 1200
TspRI	CASTG	1 cut(s)	958
VneI	GTGCAC	1 cut(s)	949
VpaK11BI	GGWCC	2 cut(s)	537, 1089
XceI	RCATGY	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	448
XmiI	GTMKAC	2 cut(s)	485, 786
XspI	CTAG	3 cut(s)	753, 771, 1022
Zsp2I	ATGCAT	1 cut(s)	1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.