Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Reverse (-)

66733515 .. 66736070

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCAAAGGACTGAGCTGGCCTCGAGTGCCAATTCATCAGATCTGATAATATGTATTTATACAGCGGCTGTATGTTGGGGAGTGGGAGACGAGTGCAAGGTGGAAGAGATACAGGTAGAGCCACCACAGAAGTTTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCCTCATGTCCAAAGGACGCCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAAAGCGTCGGAGAAGAAGTAAACGCTGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTATGTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTTACCTGGAGCGGTCTAATGCTCGATGGAACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGCTGTACCACCTCTTTTCTTGCTCCACATGGTACGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAAATGGGGTGCTCATCGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCAATCTGAACATGATCAAGATCATGACAAATCAGTTTCTAAGCTCATCAAAGACTGTACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGGTAAAGGAACAGCAGTTGTGCTAGGAGGCTCAGGTGTAACAACCGTTCAAATTGATTTTCTCTCCCTGATGAGCGGCAGAACCTTGAAAGGGTCCCTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAACTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTAGATATTAACAAAGCACTTGAACTCTTAAAGCAGCCAGATTGTGTGAAGGTTATGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

404

Amino Acids

44.0

Weight (kDa)

5.85

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	46 - 175	3.1e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	223 - 354	1.4e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
AccBSI	CCGCTC	2 cut(s)	396, 1017
AccI	GTMKAC	2 cut(s)	428, 729
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	65, 396, 1017
AcyI	GRCGYC	2 cut(s)	199, 240
AfaI	GTAC	5 cut(s)	455, 482, 488, 544, 859
AfiI	CCNNNNNNNGG	3 cut(s)	529, 603, 1032
AgsI	TTSAA	7 cut(s)	137, 289, 420, 632, 992, 1030, 1166
AjnI	CCWGG	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	6 cut(s)	16, 520, 573, 623, 764, 844
AluI	AGCT	6 cut(s)	16, 520, 573, 623, 764, 844
Alw21I	GWGCWC	2 cut(s)	538, 896
Alw26I	GTCTC	4 cut(s)	81, 170, 291, 1055
Alw44I	GTGCAC	1 cut(s)	892
AlwNI	CAGNNNCTG	2 cut(s)	68, 168
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	892
ApeKI	GCWGC	1 cut(s)	1177
AspS9I	GGNCC	1 cut(s)	1035
AsuHPI	GGTGA	1 cut(s)	791
AsuNHI	GCTAGC	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	1035
BaeGI	GKGCMC	1 cut(s)	896
BaeI	ACNNNNGTAYC	2 cut(s)	299, 332
BanII	GRGCYC	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	538, 896
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	1189
BccI	CCATC	2 cut(s)	404, 857
BciT130I	CCWGG	1 cut(s)	391
BclI	TGATCA	2 cut(s)	814, 1200
BcoDI	GTCTC	4 cut(s)	81, 170, 291, 1055
BfaI	CTAG	4 cut(s)	570, 696, 714, 965
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	3 cut(s)	66, 1018, 1178
BlsI	GCNGC	3 cut(s)	67, 1019, 1179
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	1035
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	1035
BmiI	GGNNCC	4 cut(s)	609, 931, 1036, 1037
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	4 cut(s)	141, 438, 719, 914
BmtI	GCTAGC	1 cut(s)	573
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	2 cut(s)	279, 973
BsaBI	GATNNNNATC	1 cut(s)	819
BsaHI	GRCGYC	2 cut(s)	199, 240
BsaI	GGTCTC	1 cut(s)	1055
BsaJI	CCNNGG	2 cut(s)	611, 925
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 288, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 603, 1032
Bse1I	ACTGG	3 cut(s)	162, 901, 1116
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	611, 925
BseGI	GGATG	3 cut(s)	180, 905, 1120
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	3 cut(s)	529, 603, 1032
BseMII	CTCAG	2 cut(s)	270, 987
BseNI	ACTGG	3 cut(s)	162, 901, 1116
BseSI	GKGCMC	1 cut(s)	896
BseXI	GCAGC	1 cut(s)	1189
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	538, 896
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	3 cut(s)	453, 547, 1021
BslI	CCNNNNNNNGG	3 cut(s)	529, 603, 1032
BsmAI	GTCTC	4 cut(s)	81, 170, 291, 1055
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	3 cut(s)	453, 547, 1021
BsmI	GAATGC	3 cut(s)	332, 341, 705
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	1055
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	3 cut(s)	538, 610, 896
Bsp1407I	TGTACA	1 cut(s)	857
Bsp143I	GATC	4 cut(s)	40, 814, 820, 1200
BspACI	CCGC	3 cut(s)	65, 396, 1017
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	4, 271, 986
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	2 cut(s)	823, 1129
BspLI	GGNNCC	4 cut(s)	609, 931, 1036, 1037
BspOI	GCTAGC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	1055
BsrBI	CCGCTC	2 cut(s)	396, 1017
BsrGI	TGTACA	1 cut(s)	857
BsrI	ACTGG	3 cut(s)	162, 901, 1116
BssECI	CCNNGG	2 cut(s)	611, 925
BssMI	GATC	4 cut(s)	40, 814, 820, 1200
BssNI	GRCGYC	2 cut(s)	199, 240
BssT1I	CCWWGG	2 cut(s)	611, 925
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	4 cut(s)	433, 646, 857, 988
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	199, 240
BstAUI	TGTACA	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	18, 571
BstDEI	CTNAG	5 cut(s)	12, 279, 624, 840, 973
BstF5I	GGATG	3 cut(s)	180, 905, 1120
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	4 cut(s)	43, 817, 823, 1203
BstMAI	GTCTC	4 cut(s)	81, 170, 291, 1055
BstMBI	GATC	4 cut(s)	40, 814, 820, 1200
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 336, 345, 354, 891, 929
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	896
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	1189
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	180, 905, 1120
BtsIMutI	CAGTG	2 cut(s)	174, 894
Cac8I	GCNNGC	2 cut(s)	18, 571
CaiI	CAGNNNCTG	2 cut(s)	68, 168
CciI	TCATGA	2 cut(s)	823, 1129
Cfr13I	GGNCC	1 cut(s)	1035
CseI	GACGC	3 cut(s)	207, 229, 247
Csp6I	GTAC	5 cut(s)	454, 481, 487, 543, 858
CviAII	CATG	9 cut(s)	187, 233, 477, 490, 582, 812, 824, 1093, 1130
CviQI	GTAC	5 cut(s)	454, 481, 487, 543, 858
DdeI	CTNAG	5 cut(s)	12, 279, 624, 840, 973
DpnI	GATC	4 cut(s)	42, 816, 822, 1202
DpnII	GATC	4 cut(s)	40, 814, 820, 1200
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	611, 925
Eco24I	GRGCYC	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	1055
Eco47I	GGWCC	1 cut(s)	1035
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	1035
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	2 cut(s)	611, 925
EcoT22I	ATGCAT	1 cut(s)	1094
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	2 cut(s)	611, 925
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	9 cut(s)	190, 236, 480, 493, 585, 815, 827, 1096, 1133
FaqI	GGGAC	3 cut(s)	453, 547, 1021
FatI	CATG	9 cut(s)	186, 232, 476, 489, 581, 811, 823, 1092, 1129
FbaI	TGATCA	2 cut(s)	814, 1200
FblI	GTMKAC	2 cut(s)	428, 729
Fnu4HI	GCNGC	3 cut(s)	66, 1018, 1178
FokI	GGATG	3 cut(s)	167, 892, 1127
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	3 cut(s)	66, 1018, 1178
FspBI	CTAG	4 cut(s)	570, 696, 714, 965
GluI	GCNGC	3 cut(s)	66, 1018, 1178
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	597
HgaI	GACGC	3 cut(s)	207, 229, 247
Hin1I	GRCGYC	2 cut(s)	199, 240
Hin1II	CATG	9 cut(s)	190, 236, 480, 493, 585, 815, 827, 1096, 1133
HincII	GTYRAC	4 cut(s)	429, 499, 642, 730
HindII	GTYRAC	4 cut(s)	429, 499, 642, 730
HinfI	GANTC	2 cut(s)	588, 1126
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	7 cut(s)	274, 387, 429, 499, 642, 730, 894
Hpy188I	TCNGA	5 cut(s)	40, 45, 263, 325, 808
Hpy188III	TCNNGA	8 cut(s)	148, 304, 420, 818, 824, 1123, 1130, 1204
Hpy8I	GTNNAC	7 cut(s)	274, 387, 429, 499, 642, 730, 894
Hpy99I	CGWCG	2 cut(s)	245, 263
HpyAV	CCTTC	4 cut(s)	610, 919, 1079, 1186
HpyCH4III	ACNGT	4 cut(s)	433, 646, 857, 988
HpyCH4IV	ACGT	2 cut(s)	314, 501
HpyCH4V	TGCA	8 cut(s)	4, 96, 703, 710, 894, 905, 1092, 1108
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 336, 345, 354, 891, 929
HpyF3I	CTNAG	5 cut(s)	12, 279, 624, 840, 973
HpySE526I	ACGT	2 cut(s)	314, 501
Hsp92I	GRCGYC	2 cut(s)	199, 240
Hsp92II	CATG	9 cut(s)	190, 236, 480, 493, 585, 815, 827, 1096, 1133
KflI	GGGWCCC	1 cut(s)	1035
Ksp22I	TGATCA	2 cut(s)	814, 1200
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	40, 814, 820, 1200
LmnI	GCTCC	5 cut(s)	393, 476, 525, 613, 929
Lsp1109I	GCAGC	1 cut(s)	1189
LweI	GCATC	4 cut(s)	141, 438, 719, 914
MaeI	CTAG	4 cut(s)	570, 696, 714, 965
MaeII	ACGT	2 cut(s)	314, 501
MaeIII	GTNAC	2 cut(s)	170, 979
MalI	GATC	4 cut(s)	42, 816, 822, 1202
MbiI	CCGCTC	2 cut(s)	396, 1017
MboI	GATC	4 cut(s)	40, 814, 820, 1200
MboII	GAAGA	2 cut(s)	116, 278
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	538, 610, 896
MluCI	AATT	5 cut(s)	31, 204, 343, 505, 993
MlyI	GAGTC	1 cut(s)	1120
MmeI	TCCRAC	3 cut(s)	241, 387, 652
Mph1103I	ATGCAT	1 cut(s)	1094
MseI	TTAA	3 cut(s)	498, 1152, 1172
MslI	CAYNNNNRTG	3 cut(s)	185, 938, 1097
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	391
Mva1269I	GAATGC	3 cut(s)	332, 341, 705
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	6 cut(s)	26, 336, 345, 354, 891, 929
NdeII	GATC	4 cut(s)	40, 814, 820, 1200
NheI	GCTAGC	1 cut(s)	569
NlaIII	CATG	9 cut(s)	190, 236, 480, 493, 585, 815, 827, 1096, 1133
NlaIV	GGNNCC	4 cut(s)	609, 931, 1036, 1037
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	1094
PaeR7I	CTCGAG	1 cut(s)	22
PagI	TCATGA	2 cut(s)	823, 1129
PctI	GAATGC	3 cut(s)	332, 341, 705
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	67, 1019, 1179
PleI	GAGTC	1 cut(s)	1120
PpsI	GAGTC	1 cut(s)	1120
PpuMI	RGGWCCY	1 cut(s)	1035
PsiI	TTATAA	1 cut(s)	785
Psp5II	RGGWCCY	1 cut(s)	1035
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	609, 931, 1036, 1037
PspPI	GGNCC	1 cut(s)	1035
PspPPI	RGGWCCY	1 cut(s)	1035
PspXI	VCTCGAGB	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	972, 1004
PstNI	CAGNNNCTG	2 cut(s)	68, 168
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	5 cut(s)	455, 482, 488, 544, 859
RsaNI	GTAC	5 cut(s)	454, 481, 487, 543, 858
RseI	CAYNNNNRTG	3 cut(s)	185, 938, 1097
SalI	GTCGAC	2 cut(s)	427, 728
SaqAI	TTAA	3 cut(s)	498, 1152, 1172
SatI	GCNGC	3 cut(s)	66, 1018, 1178
Sau3AI	GATC	4 cut(s)	40, 814, 820, 1200
Sau96I	GGNCC	1 cut(s)	1035
SchI	GAGTC	1 cut(s)	1120
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	3 cut(s)	538, 610, 896
SfaNI	GCATC	4 cut(s)	141, 438, 719, 914
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	1035
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	3 cut(s)	185, 938, 1097
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	5 cut(s)	31, 204, 343, 505, 993
SsiI	CCGC	3 cut(s)	65, 396, 1017
SspMI	CTAG	4 cut(s)	570, 696, 714, 965
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	2 cut(s)	611, 925
TaaI	ACNGT	4 cut(s)	433, 646, 857, 988
TaiI	ACGT	2 cut(s)	317, 504
TaqI	TCGA	4 cut(s)	23, 408, 428, 729
TasI	AATT	5 cut(s)	31, 204, 343, 505, 993
TatI	WGTACW	2 cut(s)	486, 857
TauI	GCSGC	2 cut(s)	68, 1020
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	3 cut(s)	498, 1152, 1172
Tru9I	TTAA	3 cut(s)	498, 1152, 1172
TscAI	CASTG	2 cut(s)	181, 901
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	1177
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	7 cut(s)	24, 758, 901, 933, 1109, 1131, 1146
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	181, 901
VneI	GTGCAC	1 cut(s)	892
VpaK11BI	GGWCC	1 cut(s)	1035
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	2 cut(s)	428, 729
XspI	CTAG	4 cut(s)	570, 696, 714, 965
Zsp2I	ATGCAT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.