RchiOBHm_Chr1g0384561

Alcohol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
68350231 .. 68352462
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60739

Sequence Viewer

Length: 1197 bp
ATGTCAGAAATAAGCAGCAGCTGCGCCTCACAAGTCATAACATGCAAAGCGGCGGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGACATACAAGTAGAGCCACCACAAAAGTGTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCGTCATCTCCAAAGGATACCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTTGGTGTGGTAGAGAGCGTCGGGGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTTTGTTTCAGAGTGCCAAGAATGCGAGAATTGCTTGTCAAGCAAGTCCAACTTGTGCCTGAAATATCCGTTGACCTTTAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGCTGTACCACCTCTTTTCGTGCTCCACATGGTCAGAGTACATGGTCGTTAACGTCAATTTCCTTGCCAAGCTCCACAACTGGGGTGCTCATGGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGATCAACTGTTGCCGTTATTGGTCTCGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAAAGCAAGGTGCAGCTAGGATCATTGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGAGAATCACCAATCTCAACATGATCAAGATCATAACAAATCAGTTTCTGAGCTCATCAAAGACTGCACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCTTTCATCAATGAAGCCCTAGTAGCCACAAAAATGGGTAAAGGAACAGCAGTCGTAATAGGAACCTCAAGTTCACCAACTCTTCAAATTGATTTTCTCTCCCTAATGAGTGGCAGAACCTTGAAAGGGTCCATGTTTGGAGGGCTCAGAGCGAAAACCGACCTTCCCATTCTAATCAACAAATGCATGAATAAGGAAATGCAACTGGATGAACTCTTGACTCATGAAGTTCCTCTCACAGATATTAACCAAGCATTCGAACTCTTAAAGCAGCCGGAGTGTGTGAAGGTTCTGATCAAGATTTGA

Protein Analysis

398

Amino Acids

43.19

Weight (kDa)

5.74

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 40 - 170 5e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 218 - 349 1.2e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AccI GTMKAC 2 cut(s) 413, 714
AccII CGCG 1 cut(s) 207
AciI CCGC 3 cut(s) 50, 53, 381
AclI AACGTT 1 cut(s) 299
AclWI GGATC 2 cut(s) 631, 710
AfaI GTAC 4 cut(s) 400, 440, 473, 529
AfiI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
AgsI TTSAA 5 cut(s) 274, 405, 617, 977, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 7 cut(s) 21, 505, 558, 608, 698, 749, 829
AluI AGCT 7 cut(s) 21, 505, 558, 608, 698, 749, 829
Alw21I GWGCWC 4 cut(s) 458, 523, 831, 881
Alw26I GTCTC 3 cut(s) 155, 276, 650
Alw44I GTGCAC 1 cut(s) 877
AlwI GGATC 2 cut(s) 631, 710
AlwNI CAGNNNCTG 3 cut(s) 21, 153, 824
ApaLI GTGCAC 1 cut(s) 877
ApeKI GCWGC 5 cut(s) 15, 18, 21, 695, 1162
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 1020
AsuHPI GGTGA 2 cut(s) 776, 957
AsuII TTCGAA 1 cut(s) 1149
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 1 cut(s) 1020
BaeGI GKGCMC 1 cut(s) 881
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanII GRGCYC 3 cut(s) 595, 831, 1038
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 4 cut(s) 458, 523, 831, 881
BbvI GCAGC 5 cut(s) 8, 27, 30, 707, 1174
BccI CCATC 2 cut(s) 389, 842
BceAI ACGGC 1 cut(s) 620
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 2 cut(s) 799, 1185
BcoDI GTCTC 3 cut(s) 155, 276, 650
BfaI CTAG 4 cut(s) 555, 681, 699, 911
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 6 cut(s) 16, 19, 22, 51, 696, 1163
BlsI GCNGC 6 cut(s) 17, 20, 23, 52, 697, 1164
Bme18I GGWCC 1 cut(s) 1020
BmgT120I GGNCC 1 cut(s) 1020
BmiI GGNNCC 3 cut(s) 594, 955, 1021
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 3 cut(s) 126, 423, 899
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 1149
BpuEI CTTGAG 1 cut(s) 943
BsaBI GATNNNNATC 1 cut(s) 804
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 514, 588, 1017
Bse1I ACTGG 4 cut(s) 147, 518, 886, 1101
Bse8I GATNNNNATC 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 1 cut(s) 1105
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
BseMII CTCAG 3 cut(s) 768, 816, 1051
BseNI ACTGG 4 cut(s) 147, 518, 886, 1101
BseSI GKGCMC 1 cut(s) 881
BseXI GCAGC 5 cut(s) 8, 27, 30, 707, 1174
BsgI GTGCAG 2 cut(s) 714, 826
Bsh1236I CGCG 1 cut(s) 207
BsiHKAI GWGCWC 4 cut(s) 458, 523, 831, 881
BsiSI CCGG 2 cut(s) 582, 1166
BslFI GGGAC 2 cut(s) 438, 532
BslI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
BsmAI GTCTC 3 cut(s) 155, 276, 650
BsmFI GGGAC 2 cut(s) 438, 532
BsmI GAATGC 2 cut(s) 326, 1145
Bso31I GGTCTC 1 cut(s) 650
Bsp119I TTCGAA 1 cut(s) 1149
Bsp1286I GDGCHC 6 cut(s) 458, 523, 595, 831, 881, 1038
Bsp143I GATC 5 cut(s) 623, 702, 799, 805, 1185
BspACI CCGC 3 cut(s) 50, 53, 381
BspCNI CTCAG 3 cut(s) 769, 817, 1050
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 1114
BspLI GGNNCC 3 cut(s) 594, 955, 1021
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 2 cut(s) 631, 710
BspT104I TTCGAA 1 cut(s) 1149
BspTNI GGTCTC 1 cut(s) 650
BsrI ACTGG 4 cut(s) 147, 518, 886, 1101
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 5 cut(s) 623, 702, 799, 805, 1185
BssT1I CCWWGG 1 cut(s) 596
Bst4CI ACNGT 2 cut(s) 418, 631
Bst6I CTCTTC 2 cut(s) 69, 978
BstAPI GCANNNNNTGC 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 1149
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 4 cut(s) 609, 777, 825, 1037
BstF5I GGATG 1 cut(s) 1105
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 5 cut(s) 626, 705, 802, 808, 1188
BstMAI GTCTC 3 cut(s) 155, 276, 650
BstMBI GATC 5 cut(s) 623, 702, 799, 805, 1185
BstMWI GCNNNNNNNGC 6 cut(s) 21, 321, 330, 339, 876, 914
BstNSI RCATGY 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 881
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 8, 27, 30, 707, 1174
BstV2I GAAGAC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 925
BsuI GTATCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 1105
BtsIMutI CAGTG 2 cut(s) 159, 879
Cac8I GCNNGC 1 cut(s) 556
CaiI CAGNNNCTG 3 cut(s) 21, 153, 824
CciI TCATGA 1 cut(s) 1114
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 1020
CseI GACGC 1 cut(s) 232
Csp6I GTAC 4 cut(s) 399, 439, 472, 528
CviQI GTAC 4 cut(s) 399, 439, 472, 528
DdeI CTNAG 4 cut(s) 609, 777, 825, 1037
DpnI GATC 5 cut(s) 625, 704, 801, 807, 1187
DpnII GATC 5 cut(s) 623, 702, 799, 805, 1185
Eam1104I CTCTTC 2 cut(s) 69, 978
EarI CTCTTC 2 cut(s) 69, 978
Ecl136II GAGCTC 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 596
Eco24I GRGCYC 3 cut(s) 595, 831, 1038
Eco31I GGTCTC 1 cut(s) 650
Eco47I GGWCC 1 cut(s) 1020
Eco53kI GAGCTC 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 1079
EcoT38I GRGCYC 3 cut(s) 595, 831, 1038
ErhI CCWWGG 1 cut(s) 596
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 2 cut(s) 438, 532
FbaI TGATCA 2 cut(s) 799, 1185
FblI GTMKAC 2 cut(s) 413, 714
Fnu4HI GCNGC 6 cut(s) 16, 19, 22, 51, 696, 1163
FokI GGATG 1 cut(s) 1112
FriOI GRGCYC 3 cut(s) 595, 831, 1038
Fsp4HI GCNGC 6 cut(s) 16, 19, 22, 51, 696, 1163
FspBI CTAG 4 cut(s) 555, 681, 699, 911
GlaI GCGC 1 cut(s) 25
GluI GCNGC 6 cut(s) 16, 19, 22, 51, 696, 1163
HapII CCGG 2 cut(s) 582, 1166
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 4 cut(s) 372, 414, 484, 715
HindII GTYRAC 4 cut(s) 372, 414, 484, 715
HinfI GANTC 3 cut(s) 573, 781, 1111
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 2 cut(s) 582, 1166
HphI GGTGA 2 cut(s) 776, 957
Hpy166II GTNNAC 7 cut(s) 259, 372, 414, 484, 715, 879, 965
Hpy188I TCNGA 6 cut(s) 7, 310, 469, 826, 1040, 1185
Hpy188III TCNNGA 7 cut(s) 133, 289, 405, 803, 1108, 1115, 1189
Hpy8I GTNNAC 7 cut(s) 259, 372, 414, 484, 715, 879, 965
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 595, 1064, 1171
HpyCH4III ACNGT 2 cut(s) 418, 631
HpyCH4IV ACGT 2 cut(s) 299, 486
HpyCH4V TGCA 8 cut(s) 45, 81, 695, 843, 879, 890, 1077, 1093
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 321, 330, 339, 876, 914
HpyF3I CTNAG 4 cut(s) 609, 777, 825, 1037
HpySE526I ACGT 2 cut(s) 299, 486
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 2 cut(s) 799, 1185
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 5 cut(s) 623, 702, 799, 805, 1185
LmnI GCTCC 3 cut(s) 461, 510, 598
LpnPI CCDG 8 cut(s) 160, 371, 499, 595, 789, 867, 1082, 1179
Lsp1109I GCAGC 5 cut(s) 8, 27, 30, 707, 1174
LweI GCATC 3 cut(s) 126, 423, 899
MaeI CTAG 4 cut(s) 555, 681, 699, 911
MaeII ACGT 2 cut(s) 299, 486
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 625, 704, 801, 807, 1187
MboI GATC 5 cut(s) 623, 702, 799, 805, 1185
MboII GAAGA 4 cut(s) 86, 101, 263, 965
MhlI GDGCHC 6 cut(s) 458, 523, 595, 831, 881, 1038
MluCI AATT 4 cut(s) 189, 328, 490, 978
MlyI GAGTC 1 cut(s) 1105
MmeI TCCRAC 2 cut(s) 372, 637
Mph1103I ATGCAT 1 cut(s) 1079
MseI TTAA 3 cut(s) 483, 1137, 1157
MslI CAYNNNNRTG 2 cut(s) 115, 923
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 582, 1166
Mva1269I GAATGC 2 cut(s) 326, 1145
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 6 cut(s) 21, 321, 330, 339, 876, 914
NdeII GATC 5 cut(s) 623, 702, 799, 805, 1185
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 3 cut(s) 594, 955, 1021
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 1079
NspI RCATGY 1 cut(s) 45
NspV TTCGAA 1 cut(s) 1149
OliI CACNNNNGTG 1 cut(s) 115
PagI TCATGA 1 cut(s) 1114
PctI GAATGC 2 cut(s) 326, 1145
PfeI GAWTC 2 cut(s) 573, 781
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 6 cut(s) 17, 20, 23, 52, 697, 1164
PleI GAGTC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1105
PsiI TTATAA 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 831
Psp1406I AACGTT 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 594, 955, 1021
PspPI GGNCC 1 cut(s) 1020
PstNI CAGNNNCTG 3 cut(s) 21, 153, 824
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 4 cut(s) 400, 440, 473, 529
RsaNI GTAC 4 cut(s) 399, 439, 472, 528
RseI CAYNNNNRTG 2 cut(s) 115, 923
SacI GAGCTC 1 cut(s) 831
SalI GTCGAC 2 cut(s) 412, 713
SaqAI TTAA 3 cut(s) 483, 1137, 1157
SatI GCNGC 6 cut(s) 16, 19, 22, 51, 696, 1163
Sau3AI GATC 5 cut(s) 623, 702, 799, 805, 1185
Sau96I GGNCC 1 cut(s) 1020
SchI GAGTC 1 cut(s) 1105
SduI GDGCHC 6 cut(s) 458, 523, 595, 831, 881, 1038
SfaNI GCATC 3 cut(s) 126, 423, 899
SfuI TTCGAA 1 cut(s) 1149
SinI GGWCC 1 cut(s) 1020
SmiMI CAYNNNNRTG 2 cut(s) 115, 923
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
Sse9I AATT 4 cut(s) 189, 328, 490, 978
SsiI CCGC 3 cut(s) 50, 53, 381
SspMI CTAG 4 cut(s) 555, 681, 699, 911
SstI GAGCTC 1 cut(s) 831
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 418, 631
TaiI ACGT 2 cut(s) 302, 489
TaqI TCGA 4 cut(s) 393, 413, 714, 1149
TasI AATT 4 cut(s) 189, 328, 490, 978
TatI WGTACW 1 cut(s) 471
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 573, 781
Tru1I TTAA 3 cut(s) 483, 1137, 1157
Tru9I TTAA 3 cut(s) 483, 1137, 1157
TscAI CASTG 2 cut(s) 166, 886
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 5 cut(s) 15, 18, 21, 695, 1162
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 6 cut(s) 743, 886, 918, 1094, 1116, 1131
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 166, 886
Tth111I GACNNNGTC 1 cut(s) 167
VneI GTGCAC 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 1020
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 413, 714
XspI CTAG 4 cut(s) 555, 681, 699, 911
Zsp2I ATGCAT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.