Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484511.1

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1854

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484511.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgtcagaaataagcagcagctgcgcctcacaagtcataacatgcaaagcggcggtatgttggggagtgggagaagagtgcaaggtggaagacatacaagtagagccaccacaaaagtgtgaagttcgtgtcaagatgctctatgccagtctctgtcacactgacatcgtcatctccaaaggatacccaattcctcttttccctcgcgttcttggacatgagggcgttggtgtggtagagagcgtcggggaagaagtaaacgcagaggatttcaaacaaggagacatcgtgataccaacgtttgtttcagagtgccaagaatgcgagaattgcttgtcaagcaagtccaacttgtgcctgaaatatccgttgacctttagcggtctaatgctcgatggtacttcaagaatgtcgactgtcaagggacaaaagatgctgtaccacctcttttcgtgctccacatggtcagagtacatggtcgttaacgtcaatttccttgccaagctccacaactggggtgctcatggtactactacaccacctctgtcccacgctagcttcctctcatgtggattctctaccggatttggggctccttggaaggaagctaagattgaaagaggatcaactgttgccgttattggtctcggtgctgttggattaggggcagttgagggggctagaaagcaaggtgcagctaggatcattggtgtcgacaaaaatgagatgaaaagagaaaaaggaatagcttttggaatgactgattttataaaccctgagaatcaccaatctcaacatgatcaagatcataacaaatcagtttctgagctcatcaaagactgcacagatggaatgggtgtagattattgctttgagtgcactggcgttgcatctttcatcaatgaagccctagtagccacaaaaatgggtaaaggaacagcagtcgtaataggaacctcaagttcaccaactcttcaaattgattttctctccctaatgagtggcagaaccttgaaagggtccatgtttggagggctcagagcgaaaaccgaccttcccattctaatcaacaaatgcatgaataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

362

Amino Acids

39.02

Weight (kDa)

6.16

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccI	GTMKAC	2 cut(s)	413, 714
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	50, 53, 381
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	2 cut(s)	631, 710
AfaI	GTAC	4 cut(s)	400, 440, 473, 529
AfiI	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
AgsI	TTSAA	5 cut(s)	274, 405, 617, 977, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AleI	CACNNNNGTG	1 cut(s)	115
AluBI	AGCT	7 cut(s)	21, 505, 558, 608, 698, 749, 829
AluI	AGCT	7 cut(s)	21, 505, 558, 608, 698, 749, 829
Alw21I	GWGCWC	4 cut(s)	458, 523, 831, 881
Alw26I	GTCTC	3 cut(s)	155, 276, 650
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	2 cut(s)	631, 710
AlwNI	CAGNNNCTG	3 cut(s)	21, 153, 824
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	4 cut(s)	15, 18, 21, 695
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	1020
AsuHPI	GGTGA	2 cut(s)	776, 957
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	1020
BaeGI	GKGCMC	1 cut(s)	881
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BanII	GRGCYC	3 cut(s)	595, 831, 1038
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	4 cut(s)	458, 523, 831, 881
BbvI	GCAGC	4 cut(s)	8, 27, 30, 707
BccI	CCATC	2 cut(s)	389, 842
BceAI	ACGGC	1 cut(s)	620
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	155, 276, 650
BfaI	CTAG	4 cut(s)	555, 681, 699, 911
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	16, 19, 22, 51, 696
BlsI	GCNGC	5 cut(s)	17, 20, 23, 52, 697
Bme18I	GGWCC	1 cut(s)	1020
BmgT120I	GGNCC	1 cut(s)	1020
BmiI	GGNNCC	3 cut(s)	594, 955, 1021
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	3 cut(s)	126, 423, 899
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	943
BsaBI	GATNNNNATC	1 cut(s)	804
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	1 cut(s)	596
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
Bse1I	ACTGG	3 cut(s)	147, 518, 886
Bse8I	GATNNNNATC	1 cut(s)	804
BseDI	CCNNGG	1 cut(s)	596
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
BseMII	CTCAG	3 cut(s)	768, 816, 1051
BseNI	ACTGG	3 cut(s)	147, 518, 886
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	4 cut(s)	8, 27, 30, 707
BsgI	GTGCAG	2 cut(s)	714, 826
Bsh1236I	CGCG	1 cut(s)	207
BsiHKAI	GWGCWC	4 cut(s)	458, 523, 831, 881
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	438, 532
BslI	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
BsmAI	GTCTC	3 cut(s)	155, 276, 650
BsmFI	GGGAC	2 cut(s)	438, 532
BsmI	GAATGC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	650
Bsp1286I	GDGCHC	6 cut(s)	458, 523, 595, 831, 881, 1038
Bsp143I	GATC	4 cut(s)	623, 702, 799, 805
BspACI	CCGC	3 cut(s)	50, 53, 381
BspCNI	CTCAG	3 cut(s)	769, 817, 1050
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	594, 955, 1021
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	631, 710
BspTNI	GGTCTC	1 cut(s)	650
BsrI	ACTGG	3 cut(s)	147, 518, 886
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	4 cut(s)	623, 702, 799, 805
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	418, 631
Bst6I	CTCTTC	2 cut(s)	69, 978
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	609, 777, 825, 1037
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	4 cut(s)	626, 705, 802, 808
BstMAI	GTCTC	3 cut(s)	155, 276, 650
BstMBI	GATC	4 cut(s)	623, 702, 799, 805
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 321, 330, 339, 876, 914
BstNSI	RCATGY	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	8, 27, 30, 707
BstV2I	GAAGAC	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	925
BsuI	GTATCC	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	159, 879
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	3 cut(s)	21, 153, 824
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	1020
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	4 cut(s)	399, 439, 472, 528
CviAII	CATG	9 cut(s)	42, 218, 462, 475, 524, 567, 797, 1024, 1078
CviQI	GTAC	4 cut(s)	399, 439, 472, 528
DdeI	CTNAG	4 cut(s)	609, 777, 825, 1037
DpnI	GATC	4 cut(s)	625, 704, 801, 807
DpnII	GATC	4 cut(s)	623, 702, 799, 805
Eam1104I	CTCTTC	2 cut(s)	69, 978
EarI	CTCTTC	2 cut(s)	69, 978
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	3 cut(s)	595, 831, 1038
Eco31I	GGTCTC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	1020
Eco53kI	GAGCTC	1 cut(s)	829
EcoICRI	GAGCTC	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	1 cut(s)	1079
EcoT38I	GRGCYC	3 cut(s)	595, 831, 1038
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	9 cut(s)	45, 221, 465, 478, 527, 570, 800, 1027, 1081
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	438, 532
FatI	CATG	9 cut(s)	41, 217, 461, 474, 523, 566, 796, 1023, 1077
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	2 cut(s)	413, 714
Fnu4HI	GCNGC	5 cut(s)	16, 19, 22, 51, 696
FriOI	GRGCYC	3 cut(s)	595, 831, 1038
Fsp4HI	GCNGC	5 cut(s)	16, 19, 22, 51, 696
FspBI	CTAG	4 cut(s)	555, 681, 699, 911
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	16, 19, 22, 51, 696
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	9 cut(s)	45, 221, 465, 478, 527, 570, 800, 1027, 1081
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	4 cut(s)	372, 414, 484, 715
HindII	GTYRAC	4 cut(s)	372, 414, 484, 715
HinfI	GANTC	2 cut(s)	573, 781
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	2 cut(s)	776, 957
Hpy166II	GTNNAC	7 cut(s)	259, 372, 414, 484, 715, 879, 965
Hpy188I	TCNGA	5 cut(s)	7, 310, 469, 826, 1040
Hpy188III	TCNNGA	4 cut(s)	133, 289, 405, 803
Hpy8I	GTNNAC	7 cut(s)	259, 372, 414, 484, 715, 879, 965
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	595, 1064
HpyCH4III	ACNGT	2 cut(s)	418, 631
HpyCH4IV	ACGT	2 cut(s)	299, 486
HpyCH4V	TGCA	7 cut(s)	45, 81, 695, 843, 879, 890, 1077
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 321, 330, 339, 876, 914
HpyF3I	CTNAG	4 cut(s)	609, 777, 825, 1037
HpySE526I	ACGT	2 cut(s)	299, 486
Hsp92II	CATG	9 cut(s)	45, 221, 465, 478, 527, 570, 800, 1027, 1081
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	623, 702, 799, 805
LmnI	GCTCC	3 cut(s)	461, 510, 598
LpnPI	CCDG	6 cut(s)	160, 371, 499, 595, 789, 867
Lsp1109I	GCAGC	4 cut(s)	8, 27, 30, 707
LweI	GCATC	3 cut(s)	126, 423, 899
MaeI	CTAG	4 cut(s)	555, 681, 699, 911
MaeII	ACGT	2 cut(s)	299, 486
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	625, 704, 801, 807
MboI	GATC	4 cut(s)	623, 702, 799, 805
MboII	GAAGA	4 cut(s)	86, 101, 263, 965
MhlI	GDGCHC	6 cut(s)	458, 523, 595, 831, 881, 1038
MluCI	AATT	4 cut(s)	189, 328, 490, 978
MmeI	TCCRAC	2 cut(s)	372, 637
Mph1103I	ATGCAT	1 cut(s)	1079
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	2 cut(s)	115, 923
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	326
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	21, 321, 330, 339, 876, 914
NdeII	GATC	4 cut(s)	623, 702, 799, 805
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	9 cut(s)	45, 221, 465, 478, 527, 570, 800, 1027, 1081
NlaIV	GGNNCC	3 cut(s)	594, 955, 1021
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	1079
NspI	RCATGY	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	115
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	573, 781
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	17, 20, 23, 52, 697
PsiI	TTATAA	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	831
Psp1406I	AACGTT	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	594, 955, 1021
PspPI	GGNCC	1 cut(s)	1020
PstNI	CAGNNNCTG	3 cut(s)	21, 153, 824
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	4 cut(s)	400, 440, 473, 529
RsaNI	GTAC	4 cut(s)	399, 439, 472, 528
RseI	CAYNNNNRTG	2 cut(s)	115, 923
SacI	GAGCTC	1 cut(s)	831
SalI	GTCGAC	2 cut(s)	412, 713
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	16, 19, 22, 51, 696
Sau3AI	GATC	4 cut(s)	623, 702, 799, 805
Sau96I	GGNCC	1 cut(s)	1020
SduI	GDGCHC	6 cut(s)	458, 523, 595, 831, 881, 1038
SfaNI	GCATC	3 cut(s)	126, 423, 899
SinI	GGWCC	1 cut(s)	1020
SmiMI	CAYNNNNRTG	2 cut(s)	115, 923
SmlI	CTYRAG	1 cut(s)	958
SmoI	CTYRAG	1 cut(s)	958
Sse9I	AATT	4 cut(s)	189, 328, 490, 978
SsiI	CCGC	3 cut(s)	50, 53, 381
SspMI	CTAG	4 cut(s)	555, 681, 699, 911
SstI	GAGCTC	1 cut(s)	831
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	418, 631
TaiI	ACGT	2 cut(s)	302, 489
TaqI	TCGA	3 cut(s)	393, 413, 714
TasI	AATT	4 cut(s)	189, 328, 490, 978
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	573, 781
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	166, 886
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	4 cut(s)	15, 18, 21, 695
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	743, 886, 918
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	166, 886
Tth111I	GACNNNGTC	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	1 cut(s)	1020
XceI	RCATGY	1 cut(s)	45
XmiI	GTMKAC	2 cut(s)	413, 714
XspI	CTAG	4 cut(s)	555, 681, 699, 911
Zsp2I	ATGCAT	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.