Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Forward (+)

69669240 .. 69671311

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG445300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCAGAAATAAGCAGCAGCTGCGCCTCACAAGTCATAACATGCAAAGCGGCGGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGACATACAAGTAGAGCCACCACAAAAGTGTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCCCTGTCACACTGACATCGTCATCTCCAAAGGATACCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTTGGTGTGGTAGAGAGCGTCGGGGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTTTGTTTCAGAGTGCCAAGAATGCGAGAATTGTTTGTCAAGCAAGTCCAACCTGTGCCTGAAATATCCGTTGACCTTTAGCGGTCTAATGCTCGACGGTACTTCAAGAATTAATCTCCACAACTGGGGTGCTCATGGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGATCAACTGTTGCCGTTATTGGTCTCGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCAGCTAGGATCATTGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGAGAATCACCAATCTCAACATGATCAAGATCATAACAAATCAGTTTCTGAGCTCATCAAAGACTGCACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCTTTCATCAATGAAGCCCTAGTAGCCACAAAAATGGGTAAAGGAACAGCAGTCGTAATAGGAACCTCAAGTTCACCAACTCTTCAAATTGATTTTCTCTCCCTAATGAGTGGCAGAACCTTGAAAGGGTCCATGTTTGGAGGGCTCAGAGCGAAAACCGACCTTCCCATTCTAATCGACAAATGCATGAATAAGGAAATGCAACTGGATGAACTTTTGACTCATGAAGTTCCTCTCACAGATATTAACCAAGCACTCGAACTCTTAAAGCAGCCGGAGTGTGTGAAGGTTCTGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

368

Amino Acids

39.65

Weight (kDa)

5.28

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 133	1.7e-17	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	188 - 322	2.8e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	50, 53, 381
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	2 cut(s)	541, 620
AfaI	GTAC	2 cut(s)	400, 439
AfiI	CCNNNNNNNGG	3 cut(s)	424, 498, 927
AgsI	TTSAA	5 cut(s)	274, 405, 527, 887, 925
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AleI	CACNNNNGTG	1 cut(s)	115
AluBI	AGCT	6 cut(s)	21, 468, 518, 608, 659, 739
AluI	AGCT	6 cut(s)	21, 468, 518, 608, 659, 739
Alw21I	GWGCWC	3 cut(s)	433, 741, 791
Alw26I	GTCTC	2 cut(s)	276, 560
Alw44I	GTGCAC	1 cut(s)	787
AlwI	GGATC	2 cut(s)	541, 620
AlwNI	CAGNNNCTG	3 cut(s)	21, 153, 734
ApaLI	GTGCAC	1 cut(s)	787
ApeKI	GCWGC	5 cut(s)	15, 18, 21, 605, 1072
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	930
AsuHPI	GGTGA	2 cut(s)	686, 867
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	930
BaeGI	GKGCMC	1 cut(s)	791
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BanII	GRGCYC	3 cut(s)	505, 741, 948
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	433, 741, 791
BbvI	GCAGC	5 cut(s)	8, 27, 30, 617, 1084
BccI	CCATC	1 cut(s)	752
BceAI	ACGGC	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	2 cut(s)	709, 1095
BcoDI	GTCTC	2 cut(s)	276, 560
BfaI	CTAG	4 cut(s)	465, 591, 609, 821
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	6 cut(s)	16, 19, 22, 51, 606, 1073
BlsI	GCNGC	6 cut(s)	17, 20, 23, 52, 607, 1074
Bme18I	GGWCC	1 cut(s)	930
BmgT120I	GGNCC	1 cut(s)	930
BmiI	GGNNCC	3 cut(s)	504, 865, 931
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	2 cut(s)	126, 809
BmtI	GCTAGC	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 498, 927
Bse1I	ACTGG	4 cut(s)	147, 428, 796, 1011
Bse8I	GATNNNNATC	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	1015
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	3 cut(s)	424, 498, 927
BseMII	CTCAG	3 cut(s)	678, 726, 961
BseNI	ACTGG	4 cut(s)	147, 428, 796, 1011
BseSI	GKGCMC	1 cut(s)	791
BseXI	GCAGC	5 cut(s)	8, 27, 30, 617, 1084
BsgI	GTGCAG	2 cut(s)	624, 736
Bsh1236I	CGCG	1 cut(s)	207
BsiHKAI	GWGCWC	3 cut(s)	433, 741, 791
BsiSI	CCGG	2 cut(s)	492, 1076
BslFI	GGGAC	2 cut(s)	135, 442
BslI	CCNNNNNNNGG	3 cut(s)	424, 498, 927
BsmAI	GTCTC	2 cut(s)	276, 560
BsmFI	GGGAC	2 cut(s)	135, 442
BsmI	GAATGC	2 cut(s)	326, 600
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	5 cut(s)	433, 505, 741, 791, 948
Bsp143I	GATC	5 cut(s)	533, 612, 709, 715, 1095
BspACI	CCGC	3 cut(s)	50, 53, 381
BspCNI	CTCAG	3 cut(s)	679, 727, 960
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	3 cut(s)	504, 865, 931
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	541, 620
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	4 cut(s)	147, 428, 796, 1011
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	5 cut(s)	533, 612, 709, 715, 1095
BssT1I	CCWWGG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	398, 541
Bst6I	CTCTTC	2 cut(s)	69, 888
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	4 cut(s)	519, 687, 735, 947
BstF5I	GGATG	1 cut(s)	1015
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	5 cut(s)	536, 615, 712, 718, 1098
BstMAI	GTCTC	2 cut(s)	276, 560
BstMBI	GATC	5 cut(s)	533, 612, 709, 715, 1095
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 321, 786, 824
BstNSI	RCATGY	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	791
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	8, 27, 30, 617, 1084
BstV2I	GAAGAC	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	1015
BtsIMutI	CAGTG	2 cut(s)	159, 789
Cac8I	GCNNGC	1 cut(s)	466
CaiI	CAGNNNCTG	3 cut(s)	21, 153, 734
CciI	TCATGA	1 cut(s)	1024
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	930
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	399, 438
CviAII	CATG	8 cut(s)	42, 218, 434, 477, 707, 934, 988, 1025
CviQI	GTAC	2 cut(s)	399, 438
DdeI	CTNAG	4 cut(s)	519, 687, 735, 947
DpnI	GATC	5 cut(s)	535, 614, 711, 717, 1097
DpnII	GATC	5 cut(s)	533, 612, 709, 715, 1095
Eam1104I	CTCTTC	2 cut(s)	69, 888
EarI	CTCTTC	2 cut(s)	69, 888
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	506
Eco24I	GRGCYC	3 cut(s)	505, 741, 948
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	930
Eco53kI	GAGCTC	1 cut(s)	739
EcoICRI	GAGCTC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	506
EcoT22I	ATGCAT	1 cut(s)	989
EcoT38I	GRGCYC	3 cut(s)	505, 741, 948
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	8 cut(s)	45, 221, 437, 480, 710, 937, 991, 1028
FaqI	GGGAC	2 cut(s)	135, 442
FatI	CATG	8 cut(s)	41, 217, 433, 476, 706, 933, 987, 1024
FbaI	TGATCA	2 cut(s)	709, 1095
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	6 cut(s)	16, 19, 22, 51, 606, 1073
FokI	GGATG	1 cut(s)	1022
FriOI	GRGCYC	3 cut(s)	505, 741, 948
Fsp4HI	GCNGC	6 cut(s)	16, 19, 22, 51, 606, 1073
FspBI	CTAG	4 cut(s)	465, 591, 609, 821
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	6 cut(s)	16, 19, 22, 51, 606, 1073
HapII	CCGG	2 cut(s)	492, 1076
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	8 cut(s)	45, 221, 437, 480, 710, 937, 991, 1028
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	2 cut(s)	372, 625
HindII	GTYRAC	2 cut(s)	372, 625
HinfI	GANTC	3 cut(s)	483, 691, 1021
HpaII	CCGG	2 cut(s)	492, 1076
HphI	GGTGA	2 cut(s)	686, 867
Hpy166II	GTNNAC	5 cut(s)	259, 372, 625, 789, 875
Hpy188I	TCNGA	5 cut(s)	7, 310, 736, 950, 1095
Hpy188III	TCNNGA	6 cut(s)	133, 289, 405, 713, 1025, 1099
Hpy8I	GTNNAC	5 cut(s)	259, 372, 625, 789, 875
Hpy99I	CGWCG	2 cut(s)	248, 398
HpyAV	CCTTC	3 cut(s)	505, 974, 1081
HpyCH4III	ACNGT	2 cut(s)	398, 541
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	9 cut(s)	45, 81, 598, 605, 753, 789, 800, 987, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 321, 786, 824
HpyF3I	CTNAG	4 cut(s)	519, 687, 735, 947
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	8 cut(s)	45, 221, 437, 480, 710, 937, 991, 1028
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	2 cut(s)	709, 1095
Kzo9I	GATC	5 cut(s)	533, 612, 709, 715, 1095
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	5 cut(s)	8, 27, 30, 617, 1084
LweI	GCATC	2 cut(s)	126, 809
MaeI	CTAG	4 cut(s)	465, 591, 609, 821
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	5 cut(s)	535, 614, 711, 717, 1097
MboI	GATC	5 cut(s)	533, 612, 709, 715, 1095
MboII	GAAGA	4 cut(s)	86, 101, 263, 875
MhlI	GDGCHC	5 cut(s)	433, 505, 741, 791, 948
MluCI	AATT	4 cut(s)	189, 328, 408, 888
MlyI	GAGTC	1 cut(s)	1015
MmeI	TCCRAC	2 cut(s)	372, 547
Mph1103I	ATGCAT	1 cut(s)	989
MseI	TTAA	3 cut(s)	411, 1047, 1067
MslI	CAYNNNNRTG	2 cut(s)	115, 833
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	2 cut(s)	492, 1076
Mva1269I	GAATGC	2 cut(s)	326, 600
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	21, 321, 786, 824
NdeII	GATC	5 cut(s)	533, 612, 709, 715, 1095
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	8 cut(s)	45, 221, 437, 480, 710, 937, 991, 1028
NlaIV	GGNNCC	3 cut(s)	504, 865, 931
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	989
NspI	RCATGY	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	115
PagI	TCATGA	1 cut(s)	1024
PctI	GAATGC	2 cut(s)	326, 600
PfeI	GAWTC	2 cut(s)	483, 691
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	17, 20, 23, 52, 607, 1074
PleI	GAGTC	1 cut(s)	1015
PpsI	GAGTC	1 cut(s)	1015
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	680
Psp124BI	GAGCTC	1 cut(s)	741
Psp1406I	AACGTT	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	504, 865, 931
PspPI	GGNCC	1 cut(s)	930
PstNI	CAGNNNCTG	3 cut(s)	21, 153, 734
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	400, 439
RsaNI	GTAC	2 cut(s)	399, 438
RseI	CAYNNNNRTG	2 cut(s)	115, 833
SacI	GAGCTC	1 cut(s)	741
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	411, 1047, 1067
SatI	GCNGC	6 cut(s)	16, 19, 22, 51, 606, 1073
Sau3AI	GATC	5 cut(s)	533, 612, 709, 715, 1095
Sau96I	GGNCC	1 cut(s)	930
SchI	GAGTC	1 cut(s)	1015
SduI	GDGCHC	5 cut(s)	433, 505, 741, 791, 948
SfaNI	GCATC	2 cut(s)	126, 809
SinI	GGWCC	1 cut(s)	930
SmiMI	CAYNNNNRTG	2 cut(s)	115, 833
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
Sse9I	AATT	4 cut(s)	189, 328, 408, 888
SsiI	CCGC	3 cut(s)	50, 53, 381
SspMI	CTAG	4 cut(s)	465, 591, 609, 821
SstI	GAGCTC	1 cut(s)	741
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	2 cut(s)	398, 541
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	4 cut(s)	393, 624, 978, 1059
TasI	AATT	4 cut(s)	189, 328, 408, 888
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	483, 691
Tru1I	TTAA	3 cut(s)	411, 1047, 1067
Tru9I	TTAA	3 cut(s)	411, 1047, 1067
TscAI	CASTG	2 cut(s)	166, 796
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	15, 18, 21, 605, 1072
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	6 cut(s)	653, 796, 828, 1004, 1026, 1041
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	166, 796
Tth111I	GACNNNGTC	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	930
VspI	ATTAAT	1 cut(s)	411
XceI	RCATGY	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	4 cut(s)	465, 591, 609, 821
Zsp2I	ATGCAT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.