Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004180.1

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Reverse (-)

79314 .. 81921

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004180.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgccaggcccagccctgaggcacgtagcccctacttatccctatgccgtcgattattcggtcttgagacttggaattgaagttagattgagagtatctgcaggtatgtcaaaaacaagcagcagctgcgccttgcaagtcataacatgcaaagcggctgtatgttggggagtgggagaagagtgcaaggtggaagagatacaggtagagccaccacagaagtttgaagttcgtgtcaagatgctctatgccagtctctgtcacactgacatcctcatgtccaaaggacgcccaattcctcttttccctcgcgttcttggacatgagggcgtcggtgtggtagagagcgtcggagaagaagtaaacgcagaggatttcaaacaaggagacatcgtgataccaacgtatgtttcagaatgccaagtatgcgagaattgcttgtcaggcaagtccaacctgtgccttaaacatccattcaccttgaccggtctaatgctcgatggtacttcaagaatgtcgactgtcaaggagaaaaagatgctgtaccacctcttttcttgctccacatggtccgagtacatggtcgttaacgtcaatttccttgtcaagctccacaaatggggtgctcatcgtactactacaccacctctgtcccacgctagcttcctctcatgtggattctctaccggattcggggctccttggaaggaagctaagattgaaagagggtcaactgttgctgttattggtcttggtgctgttggattaggggcagttgagggggctagaatgcaaggtgcatctatgataatcggtgtcgacaaaaatgagatgaaaagagaaaaaggaatagcttttggaatgactgattttataaatcctgacaatcaccaatctgaacatgatcaagatcatgacaaatcagtttctaagctcatcaaagactgtacagatggaatgggtgtagattattgctttgagtgcactggcgttgcatcattcatcaatgaagcccttggagccacaaaaatgggtaaaggaacagcagttgtactaggaagctcaggtgtagcaaccgttcaaattgatttcctctccctgatgagcggcagaaccttgaaagggtccctgtttggaggtctcaaagccaaaaccgaccttcccattctcatcaacaaatgcatgaatatggaaatgcaactggatgaacttttgactcatgaagttcctctcgtagatattaacaaagcacttgaactcttaaagcagccagattgtgtgaaggttctgatcaagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

433

Amino Acids

47.03

Weight (kDa)

6.64

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	1107
AccI	GTMKAC	2 cut(s)	518, 819
AccII	CGCG	1 cut(s)	312
AciI	CCGC	2 cut(s)	155, 1107
AcyI	GRCGYC	2 cut(s)	289, 330
AfaI	GTAC	6 cut(s)	505, 545, 578, 634, 949, 1053
AfiI	CCNNNNNNNGG	3 cut(s)	619, 693, 1122
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	8 cut(s)	80, 227, 379, 510, 722, 1082, 1120, 1256
AjnI	CCWGG	1 cut(s)	4
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	7 cut(s)	126, 610, 663, 713, 854, 934, 1062
AluI	AGCT	7 cut(s)	126, 610, 663, 713, 854, 934, 1062
Alw21I	GWGCWC	2 cut(s)	628, 986
Alw26I	GTCTC	4 cut(s)	61, 260, 381, 1145
Alw44I	GTGCAC	1 cut(s)	982
AlwNI	CAGNNNCTG	2 cut(s)	126, 258
AoxI	GGCC	1 cut(s)	7
ApaLI	GTGCAC	1 cut(s)	982
ApeKI	GCWGC	4 cut(s)	120, 123, 126, 1267
AsiGI	ACCGGT	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	8, 570, 1125
AsuHPI	GGTGA	2 cut(s)	469, 881
AsuNHI	GCTAGC	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	570, 1125
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	986
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BanII	GRGCYC	1 cut(s)	700
Bbv12I	GWGCWC	2 cut(s)	628, 986
BbvI	GCAGC	4 cut(s)	113, 132, 135, 1279
BccI	CCATC	2 cut(s)	494, 947
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	2 cut(s)	904, 1290
BcoDI	GTCTC	4 cut(s)	61, 260, 381, 1145
BfaI	CTAG	3 cut(s)	660, 786, 1055
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	6 cut(s)	121, 124, 127, 156, 1108, 1268
BlsI	GCNGC	6 cut(s)	122, 125, 128, 157, 1109, 1269
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	570, 1125
BmgT120I	GGNCC	3 cut(s)	8, 570, 1125
BmiI	GGNNCC	4 cut(s)	699, 1021, 1126, 1127
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	4 cut(s)	231, 528, 809, 1004
BmtI	GCTAGC	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	1063
BpuEI	CTTGAG	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	909
BsaHI	GRCGYC	2 cut(s)	289, 330
BsaI	GGTCTC	1 cut(s)	1145
BsaJI	CCNNGG	2 cut(s)	701, 1015
BsaWI	WCCGGW	2 cut(s)	485, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	619, 693, 1122
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	252, 991, 1206
Bse21I	CCTNAGG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	701, 1015
BseGI	GGATG	3 cut(s)	270, 469, 1210
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	3 cut(s)	619, 693, 1122
BseMII	CTCAG	2 cut(s)	8, 1077
BseNI	ACTGG	3 cut(s)	252, 991, 1206
BseSI	GKGCMC	1 cut(s)	986
BseXI	GCAGC	4 cut(s)	113, 132, 135, 1279
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	628, 986
BsiSI	CCGG	2 cut(s)	486, 687
BslFI	GGGAC	2 cut(s)	637, 1111
BslI	CCNNNNNNNGG	3 cut(s)	619, 693, 1122
BsmAI	GTCTC	4 cut(s)	61, 260, 381, 1145
BsmFI	GGGAC	2 cut(s)	637, 1111
BsmI	GAATGC	2 cut(s)	422, 795
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	1145
Bsp1286I	GDGCHC	3 cut(s)	628, 700, 986
Bsp1407I	TGTACA	1 cut(s)	947
Bsp143I	GATC	3 cut(s)	904, 910, 1290
BspACI	CCGC	2 cut(s)	155, 1107
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	9, 1076
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	2 cut(s)	913, 1219
BspLI	GGNNCC	4 cut(s)	699, 1021, 1126, 1127
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	1145
BsrBI	CCGCTC	1 cut(s)	1107
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	947
BsrI	ACTGG	3 cut(s)	252, 991, 1206
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	701, 1015
BssMI	GATC	3 cut(s)	904, 910, 1290
BssNI	GRCGYC	2 cut(s)	289, 330
BssT1I	CCWWGG	2 cut(s)	701, 1015
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	4 cut(s)	523, 736, 947, 1078
Bst6I	CTCTTC	2 cut(s)	174, 189
BstACI	GRCGYC	2 cut(s)	289, 330
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	947
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	4 cut(s)	17, 714, 930, 1063
BstF5I	GGATG	3 cut(s)	270, 469, 1210
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	907, 913, 1293
BstMAI	GTCTC	4 cut(s)	61, 260, 381, 1145
BstMBI	GATC	3 cut(s)	904, 910, 1290
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 426, 435, 444, 981, 1019
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	986
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	113, 132, 135, 1279
BstXI	CCANNNNNNTGG	1 cut(s)	1030
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	270, 469, 1210
BtsIMutI	CAGTG	2 cut(s)	264, 984
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	661
CaiI	CAGNNNCTG	2 cut(s)	126, 258
CciI	TCATGA	2 cut(s)	913, 1219
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	8, 570, 1125
CseI	GACGC	3 cut(s)	297, 319, 337
Csp6I	GTAC	6 cut(s)	504, 544, 577, 633, 948, 1052
CspAI	ACCGGT	1 cut(s)	485
CviQI	GTAC	6 cut(s)	504, 544, 577, 633, 948, 1052
DdeI	CTNAG	4 cut(s)	17, 714, 930, 1063
DpnI	GATC	3 cut(s)	906, 912, 1292
DpnII	GATC	3 cut(s)	904, 910, 1290
Eam1104I	CTCTTC	2 cut(s)	174, 189
EarI	CTCTTC	2 cut(s)	174, 189
Eco130I	CCWWGG	2 cut(s)	701, 1015
Eco24I	GRGCYC	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	1145
Eco47I	GGWCC	2 cut(s)	570, 1125
Eco81I	CCTNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	1125
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	701, 1015
EcoT22I	ATGCAT	1 cut(s)	1184
EcoT38I	GRGCYC	1 cut(s)	700
ErhI	CCWWGG	2 cut(s)	701, 1015
FaqI	GGGAC	2 cut(s)	637, 1111
FbaI	TGATCA	2 cut(s)	904, 1290
FblI	GTMKAC	2 cut(s)	518, 819
Fnu4HI	GCNGC	6 cut(s)	121, 124, 127, 156, 1108, 1268
FokI	GGATG	3 cut(s)	257, 456, 1217
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	6 cut(s)	121, 124, 127, 156, 1108, 1268
FspBI	CTAG	3 cut(s)	660, 786, 1055
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	6 cut(s)	121, 124, 127, 156, 1108, 1268
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	486, 687
HgaI	GACGC	3 cut(s)	297, 319, 337
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	289, 330
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	4 cut(s)	519, 589, 732, 820
HindII	GTYRAC	4 cut(s)	519, 589, 732, 820
HinfI	GANTC	3 cut(s)	678, 690, 1216
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	2 cut(s)	486, 687
HphI	GGTGA	2 cut(s)	469, 881
Hpy166II	GTNNAC	6 cut(s)	364, 519, 589, 732, 820, 984
Hpy188I	TCNGA	5 cut(s)	353, 415, 574, 898, 1290
Hpy188III	TCNNGA	9 cut(s)	64, 238, 394, 510, 881, 908, 914, 1220, 1294
Hpy8I	GTNNAC	6 cut(s)	364, 519, 589, 732, 820, 984
Hpy99I	CGWCG	3 cut(s)	53, 335, 353
HpyAV	CCTTC	3 cut(s)	700, 1169, 1276
HpyCH4III	ACNGT	4 cut(s)	523, 736, 947, 1078
HpyCH4IV	ACGT	3 cut(s)	24, 404, 591
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 426, 435, 444, 981, 1019
HpyF3I	CTNAG	4 cut(s)	17, 714, 930, 1063
HpySE526I	ACGT	3 cut(s)	24, 404, 591
Hsp92I	GRCGYC	2 cut(s)	289, 330
HspAI	GCGC	1 cut(s)	129
KflI	GGGWCCC	1 cut(s)	1125
Ksp22I	TGATCA	2 cut(s)	904, 1290
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	904, 910, 1290
LmnI	GCTCC	4 cut(s)	566, 615, 703, 1019
Lsp1109I	GCAGC	4 cut(s)	113, 132, 135, 1279
LweI	GCATC	4 cut(s)	231, 528, 809, 1004
MaeI	CTAG	3 cut(s)	660, 786, 1055
MaeII	ACGT	3 cut(s)	24, 404, 591
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	906, 912, 1292
MbiI	CCGCTC	1 cut(s)	1107
MboI	GATC	3 cut(s)	904, 910, 1290
MboII	GAAGA	3 cut(s)	191, 206, 368
MhlI	GDGCHC	3 cut(s)	628, 700, 986
MluCI	AATT	5 cut(s)	75, 294, 433, 595, 1083
MlyI	GAGTC	1 cut(s)	1210
MmeI	TCCRAC	3 cut(s)	331, 477, 742
Mph1103I	ATGCAT	1 cut(s)	1184
MseI	TTAA	4 cut(s)	465, 588, 1242, 1262
MslI	CAYNNNNRTG	3 cut(s)	275, 1028, 1187
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	486, 687
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	2 cut(s)	422, 795
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	6 cut(s)	126, 426, 435, 444, 981, 1019
NdeII	GATC	3 cut(s)	904, 910, 1290
NheI	GCTAGC	1 cut(s)	659
NlaIV	GGNNCC	4 cut(s)	699, 1021, 1126, 1127
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	1184
NspI	RCATGY	1 cut(s)	150
PagI	TCATGA	2 cut(s)	913, 1219
PctI	GAATGC	2 cut(s)	422, 795
PfeI	GAWTC	2 cut(s)	678, 690
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	6 cut(s)	122, 125, 128, 157, 1109, 1269
PleI	GAGTC	1 cut(s)	1210
PpsI	GAGTC	1 cut(s)	1210
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	1125
PsiI	TTATAA	1 cut(s)	875
Psp5II	RGGWCCY	1 cut(s)	1125
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	4 cut(s)	699, 1021, 1126, 1127
PspPI	GGNCC	3 cut(s)	8, 570, 1125
PspPPI	RGGWCCY	1 cut(s)	1125
PsrI	GAACNNNNNNTAC	2 cut(s)	1062, 1094
PstI	CTGCAG	1 cut(s)	103
PstNI	CAGNNNCTG	2 cut(s)	126, 258
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	6 cut(s)	505, 545, 578, 634, 949, 1053
RsaNI	GTAC	6 cut(s)	504, 544, 577, 633, 948, 1052
RseI	CAYNNNNRTG	3 cut(s)	275, 1028, 1187
SalI	GTCGAC	2 cut(s)	517, 818
SaqAI	TTAA	4 cut(s)	465, 588, 1242, 1262
SatI	GCNGC	6 cut(s)	121, 124, 127, 156, 1108, 1268
Sau3AI	GATC	3 cut(s)	904, 910, 1290
Sau96I	GGNCC	3 cut(s)	8, 570, 1125
SchI	GAGTC	1 cut(s)	1210
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	3 cut(s)	628, 700, 986
SfaNI	GCATC	4 cut(s)	231, 528, 809, 1004
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	570, 1125
SmiMI	CAYNNNNRTG	3 cut(s)	275, 1028, 1187
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	75, 294, 433, 595, 1083
SsiI	CCGC	2 cut(s)	155, 1107
SspMI	CTAG	3 cut(s)	660, 786, 1055
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	701, 1015
TaaI	ACNGT	4 cut(s)	523, 736, 947, 1078
TaiI	ACGT	3 cut(s)	27, 407, 594
TaqI	TCGA	4 cut(s)	51, 498, 518, 819
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	5 cut(s)	75, 294, 433, 595, 1083
TatI	WGTACW	3 cut(s)	576, 947, 1051
TauI	GCSGC	2 cut(s)	158, 1110
TfiI	GAWTC	2 cut(s)	678, 690
Tru1I	TTAA	4 cut(s)	465, 588, 1242, 1262
Tru9I	TTAA	4 cut(s)	465, 588, 1242, 1262
TscAI	CASTG	2 cut(s)	271, 991
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	4 cut(s)	120, 123, 126, 1267
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	6 cut(s)	848, 991, 1023, 1199, 1221, 1236
TspRI	CASTG	2 cut(s)	271, 991
VneI	GTGCAC	1 cut(s)	982
VpaK11BI	GGWCC	2 cut(s)	570, 1125
XceI	RCATGY	1 cut(s)	150
XmiI	GTMKAC	2 cut(s)	518, 819
XspI	CTAG	3 cut(s)	660, 786, 1055
Zsp2I	ATGCAT	1 cut(s)	1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.