Rw1G000930

Alcohol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
1342722 .. 1346464
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000930.1

Sequence Viewer

Length: 1197 bp
ATGTCAAAAACAAGCAGCAGCTGCGCCTTGCAAGTCATAACATGCAAAGCGGCTGTATGTTGGGGAATGGGAGAAGAGTGCAGGGTGGAAGAGATACAGGTAGAGCCACCACAGAAGTCTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCCTCATGTCCAAAGGACGCCCATTTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAAAGCGTCGGAGAAGAAGTAAACGCTGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTATGTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTTACCTGGAGCGGTCTAATGCTCGATGGAACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGTTGTACCACCTCTTTTCTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAAATGGGGTGCTCATCGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTCGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACAAATCTGAACATGATCAAGATCATGACAAATCAGTTTCTAAGCTCATCAAAGACTGTACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGGTAAAGGAACAGCAGTTGTGCTAGGAGGCTCAGGTGTAACAACCGTTCAAATTGATTTTCTCTCCCTGATGAGCGGCAGAACCTTGAAAGGGTCCCTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAATTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTAGATATTAACAAAGCACTTGAATTCTTAAAGCAGCCAGATTGTGTGAAGGTTCTGATCAAGATTTGA

Protein Analysis

398

Amino Acids

43.36

Weight (kDa)

6.38

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 39 - 170 5.3e-21 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 218 - 349 1.3e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AccBSI CCGCTC 2 cut(s) 381, 1002
AccI GTMKAC 2 cut(s) 413, 714
AccII CGCG 1 cut(s) 207
AciI CCGC 3 cut(s) 50, 381, 1002
AcsI RAATTY 1 cut(s) 1151
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 2 cut(s) 184, 225
AfaI GTAC 4 cut(s) 440, 473, 529, 844
AfiI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
AgsI TTSAA 6 cut(s) 274, 405, 617, 977, 1015, 1151
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AluBI AGCT 6 cut(s) 21, 505, 558, 608, 749, 829
AluI AGCT 6 cut(s) 21, 505, 558, 608, 749, 829
Alw21I GWGCWC 2 cut(s) 523, 881
Alw26I GTCTC 3 cut(s) 155, 276, 1040
Alw44I GTGCAC 1 cut(s) 877
AlwNI CAGNNNCTG 2 cut(s) 21, 153
ApaLI GTGCAC 1 cut(s) 877
ApeKI GCWGC 4 cut(s) 15, 18, 21, 1162
ApoI RAATTY 1 cut(s) 1151
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 465, 1020
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 2 cut(s) 465, 1020
BaeGI GKGCMC 1 cut(s) 881
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanII GRGCYC 1 cut(s) 595
Bbv12I GWGCWC 2 cut(s) 523, 881
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 8, 27, 30, 1174
BccI CCATC 2 cut(s) 389, 842
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 2 cut(s) 799, 1185
BcoDI GTCTC 3 cut(s) 155, 276, 1040
BfaI CTAG 4 cut(s) 555, 681, 699, 950
BisI GCNGC 6 cut(s) 16, 19, 22, 51, 1003, 1163
BlsI GCNGC 6 cut(s) 17, 20, 23, 52, 1004, 1164
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 2 cut(s) 465, 1020
BmgT120I GGNCC 2 cut(s) 465, 1020
BmiI GGNNCC 4 cut(s) 594, 916, 1021, 1022
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 3 cut(s) 126, 704, 899
BmtI GCTAGC 1 cut(s) 558
BpmI CTGGAG 1 cut(s) 397
Bpu10I CCTNAGC 2 cut(s) 264, 958
BsaBI GATNNNNATC 1 cut(s) 804
BsaHI GRCGYC 2 cut(s) 184, 225
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 2 cut(s) 596, 910
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 514, 588, 1017
Bse1I ACTGG 2 cut(s) 147, 886
Bse8I GATNNNNATC 1 cut(s) 804
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 596, 910
BseGI GGATG 3 cut(s) 165, 890, 1105
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
BseMII CTCAG 2 cut(s) 255, 972
BseNI ACTGG 2 cut(s) 147, 886
BseSI GKGCMC 1 cut(s) 881
BseXI GCAGC 4 cut(s) 8, 27, 30, 1174
BsgI GTGCAG 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 523, 881
BsiSI CCGG 1 cut(s) 582
BslFI GGGAC 3 cut(s) 438, 532, 1006
BslI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
BsmAI GTCTC 3 cut(s) 155, 276, 1040
BsmFI GGGAC 3 cut(s) 438, 532, 1006
BsmI GAATGC 3 cut(s) 317, 326, 690
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 3 cut(s) 523, 595, 881
Bsp1407I TGTACA 1 cut(s) 842
Bsp143I GATC 3 cut(s) 799, 805, 1185
BspACI CCGC 3 cut(s) 50, 381, 1002
BspCNI CTCAG 2 cut(s) 256, 971
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 2 cut(s) 808, 1114
BspLI GGNNCC 4 cut(s) 594, 916, 1021, 1022
BspOI GCTAGC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 1040
BsrBI CCGCTC 2 cut(s) 381, 1002
BsrGI TGTACA 1 cut(s) 842
BsrI ACTGG 2 cut(s) 147, 886
BssECI CCNNGG 2 cut(s) 596, 910
BssMI GATC 3 cut(s) 799, 805, 1185
BssNI GRCGYC 2 cut(s) 184, 225
BssT1I CCWWGG 2 cut(s) 596, 910
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 4 cut(s) 418, 631, 842, 973
Bst6I CTCTTC 2 cut(s) 69, 84
BstACI GRCGYC 2 cut(s) 184, 225
BstAPI GCANNNNNTGC 1 cut(s) 21
BstAUI TGTACA 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 4 cut(s) 264, 609, 825, 958
BstF5I GGATG 3 cut(s) 165, 890, 1105
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 3 cut(s) 802, 808, 1188
BstMAI GTCTC 3 cut(s) 155, 276, 1040
BstMBI GATC 3 cut(s) 799, 805, 1185
BstMWI GCNNNNNNNGC 6 cut(s) 21, 321, 330, 339, 876, 914
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 881
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 8, 27, 30, 1174
BstXI CCANNNNNNTGG 1 cut(s) 925
BtsCI GGATG 3 cut(s) 165, 890, 1105
BtsIMutI CAGTG 2 cut(s) 159, 879
Cac8I GCNNGC 1 cut(s) 556
CaiI CAGNNNCTG 2 cut(s) 21, 153
CciI TCATGA 2 cut(s) 808, 1114
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 465, 1020
CseI GACGC 3 cut(s) 192, 214, 232
Csp6I GTAC 4 cut(s) 439, 472, 528, 843
CviQI GTAC 4 cut(s) 439, 472, 528, 843
DdeI CTNAG 4 cut(s) 264, 609, 825, 958
DpnI GATC 3 cut(s) 801, 807, 1187
DpnII GATC 3 cut(s) 799, 805, 1185
Eam1104I CTCTTC 2 cut(s) 69, 84
EarI CTCTTC 2 cut(s) 69, 84
Eco130I CCWWGG 2 cut(s) 596, 910
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 2 cut(s) 465, 1020
Eco57I CTGAAG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 596, 910
EcoT22I ATGCAT 1 cut(s) 1079
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 2 cut(s) 596, 910
FaqI GGGAC 3 cut(s) 438, 532, 1006
FbaI TGATCA 2 cut(s) 799, 1185
FblI GTMKAC 2 cut(s) 413, 714
Fnu4HI GCNGC 6 cut(s) 16, 19, 22, 51, 1003, 1163
FokI GGATG 3 cut(s) 152, 877, 1112
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 6 cut(s) 16, 19, 22, 51, 1003, 1163
FspBI CTAG 4 cut(s) 555, 681, 699, 950
GlaI GCGC 1 cut(s) 25
GluI GCNGC 6 cut(s) 16, 19, 22, 51, 1003, 1163
GsuI CTGGAG 1 cut(s) 397
HapII CCGG 1 cut(s) 582
HgaI GACGC 3 cut(s) 192, 214, 232
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 2 cut(s) 184, 225
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 4 cut(s) 414, 484, 627, 715
HindII GTYRAC 4 cut(s) 414, 484, 627, 715
HinfI GANTC 3 cut(s) 573, 585, 1111
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 1 cut(s) 582
Hpy166II GTNNAC 7 cut(s) 259, 372, 414, 484, 627, 715, 879
Hpy188I TCNGA 6 cut(s) 121, 248, 310, 469, 793, 1185
Hpy188III TCNNGA 8 cut(s) 133, 289, 405, 803, 809, 1108, 1115, 1189
Hpy8I GTNNAC 7 cut(s) 259, 372, 414, 484, 627, 715, 879
Hpy99I CGWCG 2 cut(s) 230, 248
HpyAV CCTTC 4 cut(s) 595, 904, 1064, 1171
HpyCH4III ACNGT 4 cut(s) 418, 631, 842, 973
HpyCH4IV ACGT 2 cut(s) 299, 486
HpyCH4V TGCA 9 cut(s) 31, 45, 81, 688, 695, 879, 890, 1077, 1093
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 321, 330, 339, 876, 914
HpyF3I CTNAG 4 cut(s) 264, 609, 825, 958
HpySE526I ACGT 2 cut(s) 299, 486
Hsp92I GRCGYC 2 cut(s) 184, 225
HspAI GCGC 1 cut(s) 24
KflI GGGWCCC 1 cut(s) 1020
Ksp22I TGATCA 2 cut(s) 799, 1185
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 799, 805, 1185
LmnI GCTCC 5 cut(s) 378, 461, 510, 598, 914
Lsp1109I GCAGC 4 cut(s) 8, 27, 30, 1174
LweI GCATC 3 cut(s) 126, 704, 899
MaeI CTAG 4 cut(s) 555, 681, 699, 950
MaeII ACGT 2 cut(s) 299, 486
MaeIII GTNAC 2 cut(s) 155, 964
MalI GATC 3 cut(s) 801, 807, 1187
MbiI CCGCTC 2 cut(s) 381, 1002
MboI GATC 3 cut(s) 799, 805, 1185
MboII GAAGA 3 cut(s) 86, 101, 263
MfeI CAATTG 1 cut(s) 1094
MhlI GDGCHC 3 cut(s) 523, 595, 881
MluCI AATT 5 cut(s) 328, 490, 978, 1094, 1151
MlyI GAGTC 1 cut(s) 1105
MmeI TCCRAC 3 cut(s) 226, 372, 637
Mph1103I ATGCAT 1 cut(s) 1079
MseI TTAA 3 cut(s) 483, 1137, 1157
MslI CAYNNNNRTG 3 cut(s) 170, 923, 1082
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 376
MunI CAATTG 1 cut(s) 1094
Mva1269I GAATGC 3 cut(s) 317, 326, 690
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 6 cut(s) 21, 321, 330, 339, 876, 914
NdeII GATC 3 cut(s) 799, 805, 1185
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 4 cut(s) 594, 916, 1021, 1022
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 1079
NspI RCATGY 1 cut(s) 45
PagI TCATGA 2 cut(s) 808, 1114
PctI GAATGC 3 cut(s) 317, 326, 690
PfeI GAWTC 2 cut(s) 573, 585
PkrI GCNGC 6 cut(s) 17, 20, 23, 52, 1004, 1164
PleI GAGTC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1105
PpuMI RGGWCCY 1 cut(s) 1020
PsiI TTATAA 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 4 cut(s) 594, 916, 1021, 1022
PspPI GGNCC 2 cut(s) 465, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PsrI GAACNNNNNNTAC 2 cut(s) 957, 989
PstNI CAGNNNCTG 2 cut(s) 21, 153
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 4 cut(s) 440, 473, 529, 844
RsaNI GTAC 4 cut(s) 439, 472, 528, 843
RseI CAYNNNNRTG 3 cut(s) 170, 923, 1082
SalI GTCGAC 2 cut(s) 412, 713
SaqAI TTAA 3 cut(s) 483, 1137, 1157
SatI GCNGC 6 cut(s) 16, 19, 22, 51, 1003, 1163
Sau3AI GATC 3 cut(s) 799, 805, 1185
Sau96I GGNCC 2 cut(s) 465, 1020
SchI GAGTC 1 cut(s) 1105
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 3 cut(s) 523, 595, 881
SfaNI GCATC 3 cut(s) 126, 704, 899
SinI GGWCC 2 cut(s) 465, 1020
SmiMI CAYNNNNRTG 3 cut(s) 170, 923, 1082
Sse9I AATT 5 cut(s) 328, 490, 978, 1094, 1151
SsiI CCGC 3 cut(s) 50, 381, 1002
SspMI CTAG 4 cut(s) 555, 681, 699, 950
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 2 cut(s) 596, 910
TaaI ACNGT 4 cut(s) 418, 631, 842, 973
TaiI ACGT 2 cut(s) 302, 489
TaqI TCGA 3 cut(s) 393, 413, 714
TasI AATT 5 cut(s) 328, 490, 978, 1094, 1151
TatI WGTACW 2 cut(s) 471, 842
TauI GCSGC 2 cut(s) 53, 1005
TfiI GAWTC 2 cut(s) 573, 585
Tru1I TTAA 3 cut(s) 483, 1137, 1157
Tru9I TTAA 3 cut(s) 483, 1137, 1157
TscAI CASTG 2 cut(s) 166, 886
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 4 cut(s) 15, 18, 21, 1162
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 6 cut(s) 743, 886, 918, 1094, 1116, 1131
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 166, 886
VneI GTGCAC 1 cut(s) 877
VpaK11BI GGWCC 2 cut(s) 465, 1020
XapI RAATTY 1 cut(s) 1151
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 413, 714
XspI CTAG 4 cut(s) 555, 681, 699, 950
Zsp2I ATGCAT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.