Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Forward (+)

24132526 .. 24135432

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCAGAAATTAGCAGCAGCAGCGCCTCGCAAGTCATTACATGCAAAGCGGCGGTATGTTGGGGAGTAGGAGAAGGGTGCAAGGTGGAAGAGATACATGTAGAACCACCACGAAAGGGTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACGTCATCATCTCCAAAGGATACCCATTTCCTGCTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAGAGCGTCGGAGAGGGAGTAAACGCCGAGGATTTCAAACAAGGAGACATTGTGATACCAACGTTTGTTACAGAGTGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGACCAACCTGTGCCTCAAATATCCAATGACCTTCAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCAACTGTCAAGGGACATAAGATGCTGTACCACCTCTTCACTTGCTCCACATGGTCCGAGTACATGGTTGTCGAGGCCCTTTTCCTAGTCAAGCTCCACAACTGGGGTGCTCATGATACTACCAAGCCACCTCTGTCCCATGCTAGCTTCCTCTCCTGTGGGTTCTCTACTGGACTTGGGGCTTCTTGGAAGGAAGCTAAGGTCGAAAGAGGATCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCACTTGAGGGGGCTAGAATGCAAGGTGCAGCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATTGCTTTTGGAATGACTGATTTTATAAACCCTGACAATAATGAACACGATCAAGGTCATAAAAAGTCGATTTCTGAGCTCATCAAAGACTCTACAGATGGAATGGGTGTAGACTATTGCATTGAGTGCACTGGCGTTGCACCTTTCATGAATGAAGCCCTTGTGGCCACAAAAATGGGTAAAGGAACAGCAGTCCTGCTAGGAACCACAGGTACAGCAGCACCCGTTCAAATCGATTTTCTGTCCTTAATGGTCGGCAGAACCTTGAAAGGGTCCATATTTGGAGGGCTCAAAGCCAAAACCGACCTTCCCATTCTAATCAACAAATGCGTGAATAAGGAAATGCAACTGGGTGAACTCTTGACTCATGAAATTCCTCTCGTGGATATCAACCACGCATTTGAACTCTTAAAGCAGCCAGATTGTGTGAAGATTGTCATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

398

Amino Acids

42.75

Weight (kDa)

6.19

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	39 - 170	2.1e-22	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	218 - 348	1.4e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AatII	GACGTC	1 cut(s)	168
AccI	GTMKAC	2 cut(s)	714, 855
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	50, 53, 381
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	909
AcsI	RAATTY	1 cut(s)	1116
AcuI	CTGAAG	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	165, 225
AfaI	GTAC	4 cut(s)	400, 440, 473, 958
AfiI	CCNNNNNNNGG	3 cut(s)	116, 514, 1014
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	274, 405, 974, 1012, 1148
AluBI	AGCT	5 cut(s)	505, 558, 608, 698, 823
AluI	AGCT	5 cut(s)	505, 558, 608, 698, 823
Alw21I	GWGCWC	3 cut(s)	523, 825, 875
Alw26I	GTCTC	2 cut(s)	155, 276
Alw44I	GTGCAC	1 cut(s)	871
AlwI	GGATC	1 cut(s)	631
AlwNI	CAGNNNCTG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	486, 909
ApaLI	GTGCAC	1 cut(s)	871
ApeKI	GCWGC	6 cut(s)	15, 18, 21, 695, 962, 1159
ApoI	RAATTY	1 cut(s)	1116
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	3 cut(s)	465, 487, 1017
AsuHPI	GGTGA	2 cut(s)	131, 1109
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	465, 1017
BaeGI	GKGCMC	2 cut(s)	670, 875
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BalI	TGGCCA	1 cut(s)	911
BanII	GRGCYC	2 cut(s)	825, 1035
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BauI	CACGAG	1 cut(s)	1124
Bbv12I	GWGCWC	3 cut(s)	523, 825, 875
BbvI	GCAGC	6 cut(s)	27, 30, 33, 707, 974, 1171
BccI	CCATC	2 cut(s)	389, 836
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	155, 276
BfaI	CTAG	5 cut(s)	497, 555, 681, 699, 944
BfmI	CTRYAG	1 cut(s)	837
BfoI	RGCGCY	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	908
BisI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 963, 1160
BlsI	GCNGC	7 cut(s)	17, 20, 23, 52, 697, 964, 1161
Bme18I	GGWCC	2 cut(s)	465, 1017
BmgT120I	GGNCC	3 cut(s)	465, 487, 1017
BmiI	GGNNCC	2 cut(s)	949, 1018
BmrI	ACTGGG	2 cut(s)	523, 1103
BmsI	GCATC	2 cut(s)	126, 423
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	2 cut(s)	523, 1103
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	1 cut(s)	1181
BsaHI	GRCGYC	2 cut(s)	165, 225
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 514, 1014
Bse1I	ACTGG	5 cut(s)	147, 518, 586, 880, 1098
Bse8I	GATNNNNATC	1 cut(s)	1181
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	1181
BseLI	CCNNNNNNNGG	3 cut(s)	116, 514, 1014
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	5 cut(s)	147, 518, 586, 880, 1098
BseSI	GKGCMC	2 cut(s)	670, 875
BseXI	GCAGC	6 cut(s)	27, 30, 33, 707, 974, 1171
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	488, 911
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	3 cut(s)	523, 825, 875
BslFI	GGGAC	2 cut(s)	438, 532
BslI	CCNNNNNNNGG	3 cut(s)	116, 514, 1014
BsmAI	GTCTC	2 cut(s)	155, 276
BsmFI	GGGAC	2 cut(s)	438, 532
BsmI	GAATGC	2 cut(s)	326, 690
BsnI	GGCC	2 cut(s)	488, 911
Bsp1286I	GDGCHC	5 cut(s)	523, 670, 825, 875, 1035
Bsp143I	GATC	2 cut(s)	623, 793
BspACI	CCGC	3 cut(s)	50, 53, 381
BspANI	GGCC	2 cut(s)	488, 911
BspCNI	CTCAG	1 cut(s)	811
BspDI	ATCGAT	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	3 cut(s)	523, 891, 1111
BspLI	GGNNCC	2 cut(s)	949, 1018
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	631
BsrI	ACTGG	5 cut(s)	147, 518, 586, 880, 1098
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	623, 793
BssNI	GRCGYC	2 cut(s)	165, 225
BssSI	CACGAG	1 cut(s)	1124
Bst2BI	CACGAG	1 cut(s)	1124
Bst4CI	ACNGT	2 cut(s)	418, 631
Bst6I	CTCTTC	2 cut(s)	84, 452
BstACI	GRCGYC	2 cut(s)	165, 225
BstAPI	GCANNNNNTGC	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	2 cut(s)	609, 819
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	626, 796
BstMAI	GTCTC	2 cut(s)	155, 276
BstMBI	GATC	2 cut(s)	623, 793
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 321, 330, 339, 870, 908
BstNSI	RCATGY	2 cut(s)	45, 101
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	2 cut(s)	670, 875
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	6 cut(s)	27, 30, 33, 707, 974, 1171
BstXI	CCANNNNNNTGG	1 cut(s)	919
Bsu15I	ATCGAT	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	488, 911
BsuTUI	ATCGAT	1 cut(s)	978
BtsIMutI	CAGTG	2 cut(s)	159, 873
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	153
CciI	TCATGA	3 cut(s)	523, 891, 1111
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	465, 487, 1017
ClaI	ATCGAT	1 cut(s)	978
CseI	GACGC	2 cut(s)	214, 232
Csp6I	GTAC	4 cut(s)	399, 439, 472, 957
CviAII	CATG	9 cut(s)	42, 98, 218, 462, 475, 524, 551, 892, 1112
CviQI	GTAC	4 cut(s)	399, 439, 472, 957
DdeI	CTNAG	2 cut(s)	609, 819
DpnI	GATC	2 cut(s)	625, 795
DpnII	GATC	2 cut(s)	623, 793
EaeI	YGGCCR	1 cut(s)	909
Eam1104I	CTCTTC	2 cut(s)	84, 452
EarI	CTCTTC	2 cut(s)	84, 452
Ecl136II	GAGCTC	1 cut(s)	823
Eco24I	GRGCYC	2 cut(s)	825, 1035
Eco32I	GATATC	1 cut(s)	1132
Eco47I	GGWCC	2 cut(s)	465, 1017
Eco53kI	GAGCTC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRV	GATATC	1 cut(s)	1132
EcoT38I	GRGCYC	2 cut(s)	825, 1035
FaeI	CATG	9 cut(s)	45, 101, 221, 465, 478, 527, 554, 895, 1115
FaqI	GGGAC	2 cut(s)	438, 532
FatI	CATG	9 cut(s)	41, 97, 217, 461, 474, 523, 550, 891, 1111
FblI	GTMKAC	2 cut(s)	714, 855
Fnu4HI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 963, 1160
FriOI	GRGCYC	2 cut(s)	825, 1035
Fsp4HI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 963, 1160
FspBI	CTAG	5 cut(s)	497, 555, 681, 699, 944
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 963, 1160
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	488, 911
HgaI	GACGC	2 cut(s)	214, 232
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	2 cut(s)	165, 225
Hin1II	CATG	9 cut(s)	45, 101, 221, 465, 478, 527, 554, 895, 1115
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	2 cut(s)	414, 715
HindII	GTYRAC	2 cut(s)	414, 715
HinfI	GANTC	2 cut(s)	833, 1108
HphI	GGTGA	2 cut(s)	131, 1109
Hpy166II	GTNNAC	6 cut(s)	259, 414, 715, 856, 873, 1100
Hpy188I	TCNGA	4 cut(s)	7, 248, 469, 820
Hpy188III	TCNNGA	7 cut(s)	133, 405, 524, 892, 1105, 1112, 1186
Hpy8I	GTNNAC	6 cut(s)	259, 414, 715, 856, 873, 1100
Hpy99I	CGWCG	2 cut(s)	230, 248
HpyAV	CCTTC	4 cut(s)	68, 385, 595, 1061
HpyCH4III	ACNGT	2 cut(s)	418, 631
HpyCH4IV	ACGT	2 cut(s)	165, 299
HpyCH4V	TGCA	8 cut(s)	45, 81, 688, 695, 864, 873, 884, 1090
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 321, 330, 339, 870, 908
HpyF3I	CTNAG	2 cut(s)	609, 819
HpySE526I	ACGT	2 cut(s)	165, 299
Hsp92I	GRCGYC	2 cut(s)	165, 225
Hsp92II	CATG	9 cut(s)	45, 101, 221, 465, 478, 527, 554, 895, 1115
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	623, 793
LmnI	GCTCC	2 cut(s)	461, 510
Lsp1109I	GCAGC	6 cut(s)	27, 30, 33, 707, 974, 1171
LweI	GCATC	2 cut(s)	126, 423
MaeI	CTAG	5 cut(s)	497, 555, 681, 699, 944
MaeII	ACGT	2 cut(s)	165, 299
MaeIII	GTNAC	2 cut(s)	155, 304
MalI	GATC	2 cut(s)	625, 795
MboI	GATC	2 cut(s)	623, 793
MboII	GAAGA	3 cut(s)	101, 439, 1186
MhlI	GDGCHC	5 cut(s)	523, 670, 825, 875, 1035
MlsI	TGGCCA	1 cut(s)	911
MluCI	AATT	4 cut(s)	9, 328, 744, 1116
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	2 cut(s)	827, 1102
MmeI	TCCRAC	2 cut(s)	226, 637
Mox20I	TGGCCA	1 cut(s)	911
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	2 cut(s)	992, 1154
MslI	CAYNNNNRTG	1 cut(s)	917
Msp20I	TGGCCA	1 cut(s)	911
MspA1I	CMGCKG	1 cut(s)	381
Mva1269I	GAATGC	2 cut(s)	326, 690
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	21, 321, 330, 339, 870, 908
NdeII	GATC	2 cut(s)	623, 793
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	9 cut(s)	45, 101, 221, 465, 478, 527, 554, 895, 1115
NlaIV	GGNNCC	2 cut(s)	949, 1018
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	45, 101
PagI	TCATGA	3 cut(s)	523, 891, 1111
PciI	ACATGT	1 cut(s)	97
PctI	GAATGC	2 cut(s)	326, 690
PkrI	GCNGC	7 cut(s)	17, 20, 23, 52, 697, 964, 1161
PleI	GAGTC	2 cut(s)	827, 1102
PpsI	GAGTC	2 cut(s)	827, 1102
PscI	ACATGT	1 cut(s)	97
PsiI	TTATAA	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	825
Psp1406I	AACGTT	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	949, 1018
PspPI	GGNCC	3 cut(s)	465, 487, 1017
PsrI	GAACNNNNNNTAC	2 cut(s)	940, 972
PstNI	CAGNNNCTG	1 cut(s)	153
RsaI	GTAC	4 cut(s)	400, 440, 473, 958
RsaNI	GTAC	4 cut(s)	399, 439, 472, 957
RseI	CAYNNNNRTG	1 cut(s)	917
SacI	GAGCTC	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	713
SaqAI	TTAA	2 cut(s)	992, 1154
SatI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 963, 1160
Sau3AI	GATC	2 cut(s)	623, 793
Sau96I	GGNCC	3 cut(s)	465, 487, 1017
SchI	GAGTC	2 cut(s)	827, 1102
SduI	GDGCHC	5 cut(s)	523, 670, 825, 875, 1035
SfaNI	GCATC	2 cut(s)	126, 423
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	2 cut(s)	465, 1017
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	4 cut(s)	9, 328, 744, 1116
SsiI	CCGC	3 cut(s)	50, 53, 381
SspMI	CTAG	5 cut(s)	497, 555, 681, 699, 944
SstI	GAGCTC	1 cut(s)	825
TaaI	ACNGT	2 cut(s)	418, 631
TaiI	ACGT	2 cut(s)	168, 302
TaqI	TCGA	6 cut(s)	393, 483, 615, 714, 812, 978
TasI	AATT	4 cut(s)	9, 328, 744, 1116
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	992, 1154
Tru9I	TTAA	2 cut(s)	992, 1154
TscAI	CASTG	2 cut(s)	166, 880
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	6 cut(s)	15, 18, 21, 695, 962, 1159
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	6 cut(s)	743, 801, 880, 908, 912, 1128
TspRI	CASTG	2 cut(s)	166, 880
VneI	GTGCAC	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	465, 1017
XapI	RAATTY	1 cut(s)	1116
XceI	RCATGY	2 cut(s)	45, 101
XmiI	GTMKAC	2 cut(s)	714, 855
XspI	CTAG	5 cut(s)	497, 555, 681, 699, 944
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.