Rh1CG445100

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013956
Physical Location & Seq
Reverse (-)
69658442 .. 69660301
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG445100.1

Sequence Viewer

Length: 396 bp
ATGGAGGGCAGTGGCAGTGATAATATCATCCCCAACCAAAACAGGGTATTTACTTCTATTGCCATATCAGTCGATTTACAGTTTTCATCTGTTTACGGCCAGTTAGACAGGATGGAGCTTGCTCTGAAGTGGCATCCTGATAAGCACAACGGTGGCAGTCACGTTACAGCAAAGTTTCAAGAGATTAACGAAGCTTACGAAGTGTTGAGTGATCCTGCTAAGCGACTTGACTATGATCTAACTGGCATATGTGAGATTGATAAGTATACTTTACCGGAATATCTTGGCAGATTTAGGGGAATGATACTTACATGCAATGGCCTGGGTATTAGTCATGCATCAACATGGTCACAACAATTGGTGGAAACTGATGGCTTAGCAGAGAAATCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

131

Amino Acids

14.57

Weight (kDa)

4.93

Isoelectric Point (pI)

24.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 39 - 79 1.1e-14 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16650 AT5G16650
fragaria_vesca FvH4_7g34190 FvH4_7g34190 FvH4_7g34190
prunus_persica Prupe.2G328700_v2.0.a1 Prupe.2G328700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0384541
rosa_laevigata RLG00000026033
rosa_roxburghii Rroxscaffold_4G00276610
rosa_rugosa Rorug01G0448800 Rorug01G0448900
rosa_samantha Rh1AG473900 Rh1BG432000 Rh1CG445100 Rh1DG464500
rosa_wichuraiana Rw1G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 321
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 2 cut(s) 118, 194
AluI AGCT 2 cut(s) 118, 194
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 97, 319
BccI CCATC 2 cut(s) 106, 365
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 323
BlpI GCTNAGC 2 cut(s) 219, 376
Bme1390I CCNGG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 142, 347
Bpu1102I GCTNAGC 2 cut(s) 219, 376
BsaJI CCNNGG 1 cut(s) 322
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 100, 247
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 3 cut(s) 27, 117, 133
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 100, 247
BshFI GGCC 2 cut(s) 99, 321
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 43
BsnI GGCC 2 cut(s) 99, 321
Bsp143I GATC 2 cut(s) 211, 235
Bsp1720I GCTNAGC 2 cut(s) 219, 376
BspANI GGCC 2 cut(s) 99, 321
BspPI GGATC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 2 cut(s) 100, 247
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 2 cut(s) 211, 235
BssNAI GTATAC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 81, 152
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 219, 376
BstF5I GGATG 3 cut(s) 27, 117, 133
BstKTI GATC 2 cut(s) 214, 238
BstMBI GATC 2 cut(s) 211, 235
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 321
BstZ17I GTATAC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 99, 321
BtsCI GGATG 3 cut(s) 27, 117, 133
BtsI GCAGTG 2 cut(s) 16, 22
BtsIMutI CAGTG 2 cut(s) 16, 22
Cac8I GCNNGC 1 cut(s) 120
CviAII CATG 3 cut(s) 312, 335, 345
CviJI RGCY 6 cut(s) 99, 118, 194, 321, 375, 392
CviKI_1 RGCY 6 cut(s) 99, 118, 194, 321, 375, 392
DdeI CTNAG 2 cut(s) 219, 376
DpnI GATC 2 cut(s) 213, 237
DpnII GATC 2 cut(s) 211, 235
EaeI YGGCCR 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 3 cut(s) 315, 338, 348
FaiI YATR 8 cut(s) 65, 234, 248, 250, 267, 313, 336, 346
FatI CATG 3 cut(s) 311, 334, 344
FauNDI CATATG 1 cut(s) 248
FblI GTMKAC 1 cut(s) 266
FokI GGATG 3 cut(s) 14, 120, 124
HaeIII GGCC 2 cut(s) 99, 321
HapII CCGG 1 cut(s) 275
Hin1II CATG 3 cut(s) 315, 338, 348
HindIII AAGCTT 1 cut(s) 192
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 94, 267
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 137, 179
Hpy8I GTNNAC 2 cut(s) 94, 267
HpyCH4III ACNGT 2 cut(s) 81, 152
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 315, 338
HpyF3I CTNAG 2 cut(s) 219, 376
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 315, 338, 348
Kzo9I GATC 2 cut(s) 211, 235
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 9 cut(s) 28, 94, 113, 150, 228, 228, 288, 308, 335
LweI GCATC 2 cut(s) 142, 347
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 158, 163, 348
MalI GATC 2 cut(s) 213, 237
MboI GATC 2 cut(s) 211, 235
MfeI CAATTG 1 cut(s) 356
MluCI AATT 1 cut(s) 356
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 2 cut(s) 150, 343
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 248
NdeII GATC 2 cut(s) 211, 235
NlaIII CATG 3 cut(s) 315, 338, 348
NmuCI GTSAC 2 cut(s) 158, 348
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
RseI CAYNNNNRTG 2 cut(s) 150, 343
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 2 cut(s) 211, 235
ScrFI CCNGG 1 cut(s) 323
SetI ASST 3 cut(s) 120, 165, 196
SfaNI GCATC 2 cut(s) 142, 347
SmiMI CAYNNNNRTG 2 cut(s) 150, 343
Sse9I AATT 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 81, 152
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 356
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 16, 22
TseFI GTSAC 2 cut(s) 158, 348
Tsp45I GTSAC 2 cut(s) 158, 348
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 16, 22
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.