RLG00000026033

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013956
Physical Location & Seq
Forward (+)
151561 .. 153062
1502 bp
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UTR
Exon/CDS
Intron
RLM00000026033

Sequence Viewer

Length: 357 bp
ATGGAGGGCAGTGGCAGTGATAATACCATCCCCAACCAAAACAAGTTTCCCAAGGATTACTACAAAATTTTGGAGGTTGATTATGATGCAACTGATGAGAACATCAAACTAAACTACCGAAGGCTTGCTCTGAAGTGGCATCCTGATAAGCACAACGGTTGCAGTCACGTTACAGCAAAGTTTCAAGAGATTAACAAAGCTTACAAAGTGTTGAGTGATCCTGCTAAGCGACTTGACTATGATCTAACTGGCGTATATGAGATTGATAAGTATACTTTACCGGAATATCTTGGCAGATTTAGAGGAATGATACTTACATGCAATGGCCTGGGTATTAGTCATGCATCAACATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

119

Amino Acids

13.64

Weight (kDa)

6.89

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 19 - 81 2.7e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16650 AT5G16650
fragaria_vesca FvH4_7g34190 FvH4_7g34190 FvH4_7g34190
prunus_persica Prupe.2G328700_v2.0.a1 Prupe.2G328700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0384541
rosa_laevigata RLG00000026033
rosa_roxburghii Rroxscaffold_4G00276610
rosa_rugosa Rorug01G0448800 Rorug01G0448900
rosa_samantha Rh1AG473900 Rh1BG432000 Rh1CG445100 Rh1DG464500
rosa_wichuraiana Rw1G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 327
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 66
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 3 cut(s) 76, 148, 353
Bpu1102I GCTNAGC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 51, 328
BsaWI WCCGGW 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 51, 328
BseGI GGATG 2 cut(s) 27, 139
BseMI GCAATG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 253
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 281
BsnI GGCC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 217, 241
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 51, 328
BssMI GATC 2 cut(s) 217, 241
BssNAI GTATAC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 27, 139
BstKTI GATC 2 cut(s) 220, 244
BstMBI GATC 2 cut(s) 217, 241
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 327
BstZ17I GTATAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 2 cut(s) 27, 139
BtsI GCAGTG 2 cut(s) 16, 22
BtsIMutI CAGTG 2 cut(s) 16, 22
Cac8I GCNNGC 1 cut(s) 126
CviAII CATG 3 cut(s) 318, 341, 351
CviJI RGCY 3 cut(s) 124, 200, 327
CviKI_1 RGCY 3 cut(s) 124, 200, 327
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 219, 243
DpnII GATC 2 cut(s) 217, 241
Eco130I CCWWGG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 3 cut(s) 321, 344, 354
FaiI YATR 8 cut(s) 84, 240, 256, 258, 273, 319, 342, 352
FatI CATG 3 cut(s) 317, 340, 350
FblI GTMKAC 1 cut(s) 272
FokI GGATG 2 cut(s) 14, 126
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 281
Hin1II CATG 3 cut(s) 321, 344, 354
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 143, 185
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 4 cut(s) 89, 162, 321, 344
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 321, 344, 354
Kzo9I GATC 2 cut(s) 217, 241
LpnPI CCDG 6 cut(s) 156, 234, 234, 294, 314, 341
LweI GCATC 3 cut(s) 76, 148, 353
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 164, 169
MalI GATC 2 cut(s) 219, 243
MboI GATC 2 cut(s) 217, 241
MluCI AATT 1 cut(s) 66
MnlI CCTC 2 cut(s) 67, 296
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 349
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
NdeII GATC 2 cut(s) 217, 241
NlaIII CATG 3 cut(s) 321, 344, 354
NmuCI GTSAC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 349
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 2 cut(s) 217, 241
ScrFI CCNGG 1 cut(s) 329
SetI ASST 3 cut(s) 78, 171, 202
SfaNI GCATC 3 cut(s) 76, 148, 353
SmiMI CAYNNNNRTG 1 cut(s) 349
Sse9I AATT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 171
TasI AATT 1 cut(s) 66
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 16, 22
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 2 cut(s) 16, 22
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.