FvH4_c6g00040
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
contig_6
OG0011280
Physical Location & Seq
Forward (+)
26058 .. 30155
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_c6g00040.t2

Sequence Viewer

Length: 1416 bp
ATGAGCGCAATGAAGGGACCACTGGAAAGGCTTCACCTAAGTGAAAGCCACCACCAATCGCCGTTCCCCGATTCCGACCCAGCTCGATTCCAGACCCTTCTGGACTCCGCGGCCTCCGACCCCACTCTTCCTTATTCTTCCTCTCTCGGTGCTGACGTGGATCCCAGTTCGGACGACAAGGATGGCGGCATTCTCAGCCAGGACTTCTTCTGCACTCCGGATTATATCACCCCGGAAAATCAGAATAATACGTTCAACGGATTTGACTGCACTAAGGAAAACATCCCATGCCCCAAATCCCCGGAGAAAACTACGCTCAAATCCAAGAGGCGTCGACAGGGACATTATGTTATCTCATCGAATCCTCTTAGCCCCACTTTGTTCGGGAATCAGGAGGTAGGAAAAGATGCAATTGGGATAGAAGATATAGAGATAGAGAACACAACAGTAAGTGAAGTGCGGAAGACAACAAACTATGTATCCCAATCTGCAGTGGCTTTACGCTGCCGGGTTATGCCGCCTCCATGCTTTAAGAATCCATATCTAAAGGATGATTCACAGATGGATATTGATCCTTTTGGCAATCAAAGATCGAAATGTGCAGCTTTCTTACCTGCAATGAAGGATGGAAATGGCCTTTCACGTTATTGTGCTGATTTTCATGAGATAGAGCAAATCGGGACTGGGAACTTCAGTCATGTTTTTAAAGTCTTGAATCGAATTGATGGTTGCTTGTATGCTGTGAAACAAAGCATTAGTCAATTGCATCTGGACACAGAAAGGAGAAAAGCTTTGATGGAAGTTCAATGCTTAGCAGCTCTGGGATCCCATGCAAATATTGTTGGGTACTACACTTCTTGGTTTGAAAATGAGAAGCTCTACATTCAGATGGAGCTATGTGATCACAGCTTATGTGTAAACAATATTTCCAGACCTTTCACAGAGGGAGAGGTTTTAGTAGCCTTGTATCAGATTGCCAAGGCATTGCAGTTTATGCACAAGAGAGGAATAGCTCACTTGGATGTAAAACCAGATAATATATATGCAAAAGATGGTATTTATAAGCTTGGTGACTTTGGATGTGCAACTCTACTTGATAAAAGCCTTCCAATTGAAGAGGGTGATGCTCGCTATATGCCTTCAGAGATCCTGAATGAGAAACATGACTATCTTGACAAGGCTGATATCTTCTCATTGGGAGTTGCTATATATGAGCTTATTAGAGGTTCACCTTTACTAGTAGACGGACCTCAAACCGTAAATCTTAAGAAAGGAAAATTGCCACTGCTCCCCAGTTACTCCTTGCAACTTCAGAACTTGCTCAAGATCATGTTGGATCCAAATCCAGACTTGAGACCATCAGCTAAAGAGTTGGTTGAACATTCAATTTTCCACAGAAAAAATGCATGGGCATAG

Protein Analysis

472

Amino Acids

52.65

Weight (kDa)

5.72

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 220 - 417 7.9e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 223 - 408 3.5e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02970
fragaria_vesca FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040
malus_domestica MD03G1283400.v1.1 MD11G1303200.v1.1
prunus_persica Prupe.8G256300_v2.0.a1
pyrus_communis pycom03g22420 pycom11g26490
rosa_chinensis RchiOBHm_Chr6g0293261
rosa_laevigata RLG00000011963
rosa_multiflora Rmu_ssc0000162.1_g000031
rosa_roxburghii Rroxscaffold_7G00174300
rosa_rugosa Rorug06G0233800
rosa_samantha Rh6AG346800 Rh6BG354200 Rh6CG360700 Rh6DG347200
rosa_wichuraiana Rw6G030190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
Acc36I ACCTGC 1 cut(s) 622
AccI GTMKAC 2 cut(s) 334, 1242
AccII CGCG 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 5 cut(s) 108, 110, 186, 460, 518
AclWI GGATC 8 cut(s) 155, 168, 566, 819, 832, 1141, 1331, 1344
AcuI CTGAAG 3 cut(s) 676, 1125, 1295
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 1 cut(s) 848
AflII CTTAAG 1 cut(s) 1265
AgsI TTSAA 7 cut(s) 256, 715, 806, 866, 1115, 1379, 1386
AhlI ACTAGT 1 cut(s) 1237
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 1348
AlwI GGATC 8 cut(s) 155, 168, 566, 819, 832, 1141, 1331, 1344
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 111, 634
ApeKI GCWGC 3 cut(s) 504, 602, 815
ArsI GACNNNNNNTTYG 2 cut(s) 742, 774
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 17, 1247
AsuC2I CCSGG 3 cut(s) 233, 302, 509
AsuHPI GGTGA 5 cut(s) 26, 220, 1082, 1133, 1221
AvaII GGWCC 2 cut(s) 17, 1247
BamHI GGATCC 3 cut(s) 160, 824, 1336
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 3 cut(s) 491, 614, 827
BccI CCATC 8 cut(s) 176, 556, 620, 719, 790, 883, 1046, 1366
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 490
BclI TGATCA 1 cut(s) 901
BcnI CCSGG 3 cut(s) 233, 302, 509
BcoDI GTCTC 1 cut(s) 1348
BcuI ACTAGT 1 cut(s) 1237
BfaI CTAG 1 cut(s) 1238
BfmI CTRYAG 1 cut(s) 489
BfrI CTTAAG 1 cut(s) 1265
BfuAI ACCTGC 1 cut(s) 622
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 6 cut(s) 111, 187, 505, 518, 603, 816
BlpI GCTNAGC 1 cut(s) 811
BlsI GCNGC 6 cut(s) 112, 188, 506, 519, 604, 817
Bme1390I CCNGG 4 cut(s) 200, 233, 302, 509
Bme18I GGWCC 2 cut(s) 17, 1247
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 17, 1247
BmiI GGNNCC 4 cut(s) 18, 162, 826, 1338
BmrFI CCNGG 4 cut(s) 200, 233, 302, 509
BmrI ACTGGG 3 cut(s) 159, 693, 1287
BmsI GCATC 3 cut(s) 397, 775, 1114
BmuI ACTGGG 3 cut(s) 159, 693, 1287
BpiI GAAGAC 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 811
BpuEI CTTGAG 2 cut(s) 1307, 1372
BpuMI CCSGG 3 cut(s) 233, 302, 509
BsaBI GATNNNNATC 2 cut(s) 570, 1341
BsaHI GRCGYC 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 1348
BsaJI CCNNGG 4 cut(s) 108, 231, 300, 978
BsaWI WCCGGW 1 cut(s) 217
Bse1I ACTGG 4 cut(s) 27, 165, 688, 1293
Bse3DI GCAATG 3 cut(s) 15, 624, 983
Bse8I GATNNNNATC 2 cut(s) 570, 1341
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 108, 231, 300, 978
BseGI GGATG 6 cut(s) 187, 282, 556, 631, 1027, 1085
BseJI GATNNNNATC 2 cut(s) 570, 1341
BseMI GCAATG 3 cut(s) 15, 624, 983
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 4 cut(s) 27, 165, 688, 1293
BseXI GCAGC 3 cut(s) 491, 614, 827
BseYI CCCAGC 1 cut(s) 79
BsgI GTGCAG 3 cut(s) 196, 253, 621
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 2 cut(s) 113, 636
BsiSI CCGG 4 cut(s) 218, 233, 302, 508
BslFI GGGAC 3 cut(s) 30, 354, 694
BsmAI GTCTC 1 cut(s) 1348
BsmFI GGGAC 3 cut(s) 30, 354, 694
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 2 cut(s) 113, 636
Bso31I GGTCTC 1 cut(s) 1348
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
Bsp1720I GCTNAGC 1 cut(s) 811
BspACI CCGC 5 cut(s) 108, 110, 186, 460, 518
BspANI GGCC 2 cut(s) 113, 636
BspCNI CTCAG 1 cut(s) 207
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 1 cut(s) 110
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 4 cut(s) 18, 162, 826, 1338
BspMAI CTGCAG 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 622
BspPI GGATC 8 cut(s) 155, 168, 566, 819, 832, 1141, 1331, 1344
BspTI CTTAAG 1 cut(s) 1265
BspTNI GGTCTC 1 cut(s) 1348
BsrDI GCAATG 3 cut(s) 15, 624, 983
BsrI ACTGG 4 cut(s) 27, 165, 688, 1293
BssECI CCNNGG 4 cut(s) 108, 231, 300, 978
BssMI GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 978
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 448, 1258
Bst6I CTCTTC 2 cut(s) 132, 1110
BstACI GRCGYC 1 cut(s) 331
BstAFI CTTAAG 1 cut(s) 1265
BstAPI GCANNNNNTGC 1 cut(s) 994
BstC8I GCNNGC 1 cut(s) 1129
BstDEI CTNAG 5 cut(s) 38, 194, 273, 368, 811
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 6 cut(s) 187, 282, 556, 631, 1027, 1085
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 8 cut(s) 163, 574, 593, 827, 904, 1149, 1329, 1339
BstMAI GTCTC 1 cut(s) 1348
BstMBI GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
BstMWI GCNNNNNNNGC 2 cut(s) 195, 994
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 4 cut(s) 198, 231, 300, 507
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 3 cut(s) 491, 614, 827
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 4 cut(s) 160, 824, 1146, 1336
BstYI RGATCY 4 cut(s) 160, 824, 1146, 1336
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 113, 636
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 6 cut(s) 187, 282, 556, 631, 1027, 1085
BtsI GCAGTG 2 cut(s) 498, 1283
BtsIMutI CAGTG 3 cut(s) 20, 498, 1283
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 1 cut(s) 1129
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 17, 1247
Cfr42I CCGCGG 1 cut(s) 111
CseI GACGC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 847
CviAII CATG 8 cut(s) 288, 525, 662, 698, 830, 1163, 1330, 1407
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 5 cut(s) 38, 194, 273, 368, 811
DpnI GATC 8 cut(s) 162, 573, 592, 826, 903, 1148, 1328, 1338
DpnII GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
DraI TTTAAA 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 132, 1110
EarI CTCTTC 2 cut(s) 132, 1110
Eco130I CCWWGG 1 cut(s) 978
Eco31I GGTCTC 1 cut(s) 1348
Eco32I GATATC 1 cut(s) 1186
Eco47I GGWCC 2 cut(s) 17, 1247
Eco57I CTGAAG 3 cut(s) 676, 1125, 1295
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 1186
EcoT14I CCWWGG 1 cut(s) 978
EcoT22I ATGCAT 1 cut(s) 1408
ErhI CCWWGG 1 cut(s) 978
FaeI CATG 8 cut(s) 291, 528, 665, 701, 833, 1166, 1333, 1410
FaqI GGGAC 3 cut(s) 30, 354, 694
FatI CATG 8 cut(s) 287, 524, 661, 697, 829, 1162, 1329, 1406
FbaI TGATCA 1 cut(s) 901
FblI GTMKAC 2 cut(s) 334, 1242
Fnu4HI GCNGC 6 cut(s) 111, 187, 505, 518, 603, 816
FokI GGATG 6 cut(s) 194, 269, 563, 638, 1034, 1092
Fsp4HI GCNGC 6 cut(s) 111, 187, 505, 518, 603, 816
FspBI CTAG 1 cut(s) 1238
GlaI GCGC 1 cut(s) 7
GluI GCNGC 6 cut(s) 111, 187, 505, 518, 603, 816
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 113, 636
HapII CCGG 4 cut(s) 218, 233, 302, 508
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 8 cut(s) 291, 528, 665, 701, 833, 1166, 1333, 1410
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HindIII AAGCTT 2 cut(s) 789, 1064
HinfI GANTC 8 cut(s) 71, 87, 104, 361, 388, 535, 554, 715
HpaII CCGG 4 cut(s) 218, 233, 302, 508
HphI GGTGA 5 cut(s) 26, 220, 1082, 1133, 1221
Hpy166II GTNNAC 4 cut(s) 335, 919, 1229, 1243
Hpy188I TCNGA 8 cut(s) 76, 118, 172, 243, 888, 972, 1144, 1314
Hpy8I GTNNAC 4 cut(s) 335, 919, 1229, 1243
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 5 cut(s) 7, 107, 616, 1115, 1149
HpyCH4III ACNGT 2 cut(s) 448, 1258
HpyCH4IV ACGT 3 cut(s) 156, 251, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 994
HpyF3I CTNAG 5 cut(s) 38, 194, 273, 368, 811
HpySE526I ACGT 3 cut(s) 156, 251, 643
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 8 cut(s) 291, 528, 665, 701, 833, 1166, 1333, 1410
HspAI GCGC 1 cut(s) 6
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 901
KspI CCGCGG 1 cut(s) 111
Kzo9I GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
LmnI GCTCC 2 cut(s) 892, 1293
Lsp1109I GCAGC 3 cut(s) 491, 614, 827
LweI GCATC 3 cut(s) 397, 775, 1114
MaeI CTAG 1 cut(s) 1238
MaeII ACGT 3 cut(s) 156, 251, 643
MaeIII GTNAC 2 cut(s) 1070, 1295
MalI GATC 8 cut(s) 162, 573, 592, 826, 903, 1148, 1328, 1338
MboI GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
MboII GAAGA 7 cut(s) 119, 129, 199, 434, 475, 1127, 1180
MfeI CAATTG 3 cut(s) 411, 761, 1110
MflI RGATCY 4 cut(s) 160, 824, 1146, 1336
MluCI AATT 6 cut(s) 411, 720, 761, 1110, 1277, 1386
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 3 cut(s) 99, 141, 1314
Mph1103I ATGCAT 1 cut(s) 1408
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 531, 705, 1266
MslI CAYNNNNRTG 3 cut(s) 39, 887, 1020
MspA1I CMGCKG 1 cut(s) 110
MspCI CTTAAG 1 cut(s) 1265
MspI CCGG 4 cut(s) 218, 233, 302, 508
MspR9I CCNGG 4 cut(s) 200, 233, 302, 509
MunI CAATTG 3 cut(s) 411, 761, 1110
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 195, 994
NciI CCSGG 3 cut(s) 233, 302, 509
NdeII GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
NlaIII CATG 8 cut(s) 291, 528, 665, 701, 833, 1166, 1333, 1410
NlaIV GGNNCC 4 cut(s) 18, 162, 826, 1338
NmuCI GTSAC 1 cut(s) 1070
NsiI ATGCAT 1 cut(s) 1408
OliI CACNNNNGTG 1 cut(s) 39
PagI TCATGA 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 7 cut(s) 71, 87, 361, 388, 535, 554, 715
PkrI GCNGC 6 cut(s) 112, 188, 506, 519, 604, 817
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PsiI TTATAA 1 cut(s) 1062
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 4 cut(s) 18, 162, 826, 1338
PspPI GGNCC 2 cut(s) 17, 1247
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 4 cut(s) 160, 824, 1146, 1336
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
RseI CAYNNNNRTG 3 cut(s) 39, 887, 1020
SacII CCGCGG 1 cut(s) 111
SalI GTCGAC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 531, 705, 1266
SatI GCNGC 6 cut(s) 111, 187, 505, 518, 603, 816
Sau3AI GATC 8 cut(s) 160, 571, 590, 824, 901, 1146, 1326, 1336
Sau96I GGNCC 2 cut(s) 17, 1247
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 4 cut(s) 200, 233, 302, 509
SfaNI GCATC 3 cut(s) 397, 775, 1114
SfcI CTRYAG 1 cut(s) 489
Sfr303I CCGCGG 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 111
SinI GGWCC 2 cut(s) 17, 1247
SmiMI CAYNNNNRTG 3 cut(s) 39, 887, 1020
SmlI CTYRAG 3 cut(s) 1265, 1322, 1351
SmoI CTYRAG 3 cut(s) 1265, 1322, 1351
SpeI ACTAGT 1 cut(s) 1237
Sse9I AATT 6 cut(s) 411, 720, 761, 1110, 1277, 1386
SsiI CCGC 5 cut(s) 108, 110, 186, 460, 518
SspI AATATT 2 cut(s) 838, 925
SspMI CTAG 1 cut(s) 1238
StyD4I CCNGG 4 cut(s) 198, 231, 300, 507
StyI CCWWGG 1 cut(s) 978
TaaI ACNGT 2 cut(s) 448, 1258
TaiI ACGT 3 cut(s) 159, 254, 646
TaqI TCGA 5 cut(s) 85, 334, 359, 593, 718
TasI AATT 6 cut(s) 411, 720, 761, 1110, 1277, 1386
TauI GCSGC 3 cut(s) 113, 189, 520
TfiI GAWTC 7 cut(s) 71, 87, 361, 388, 535, 554, 715
Tru1I TTAA 3 cut(s) 531, 705, 1266
Tru9I TTAA 3 cut(s) 531, 705, 1266
TscAI CASTG 3 cut(s) 27, 498, 1290
TseFI GTSAC 1 cut(s) 1070
TseI GCWGC 3 cut(s) 504, 602, 815
Tsp45I GTSAC 1 cut(s) 1070
TspDTI ATGAA 3 cut(s) 26, 635, 650
TspGWI ACGGA 2 cut(s) 273, 1260
TspRI CASTG 3 cut(s) 27, 498, 1290
Vha464I CTTAAG 1 cut(s) 1265
VpaK11BI GGWCC 2 cut(s) 17, 1247
XmiI GTMKAC 2 cut(s) 334, 1242
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 1238
Zsp2I ATGCAT 1 cut(s) 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.