Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011280

Physical Location & Seq

Genomic Coordinates Reverse (-)

54971117 .. 54975154

Gene Structure 4038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGCGCCATGAAGGGACCACTAGAAAGGCTTCACCTAAGTGAAAGCCACCACCAATCACCGTTCCCCAATTCCGACCCAGCTCGATTCCAGTGCCTTCTGGACTCCGTCGCCTCCGACCCCAGTCTTCCTTCTTCCTCGTCTCTCGGTGCTGACCTCGATCCCAATTTGGATGACAAGGATGGCATTCTCAGCCAGGACTTCTTCTGCACTCCAGATTATATCACCCCGGAAAATCAGAATACGTTTAACGGGTTTGATTGCAGTAAGGAAAACATCCCTTGCCCCAAATCTCCGGAGAAAACTACGGTTAAATCCAAGAGGCGTCGACAGGGGCATTATGTTATCTCATCGGATCCTGTTCTTAGCCCCACTTTGTTTGGGAATCAGGAGGTGGGGAAAGATGCAATTGGAATAGATGATATTGAGATAGAGAACACAACTGTAAGTGAAGTGCGGAAGACAACAAATTATGTATCCCAATCTGCAGTTGCTCTGCGCTGTCGGGTTACGCCTCCTCCATGCTTTAAGAATCCTTATTTAAAGGATGCTTCACAAATGGAGATTGATCCTTTTGGCAATCAAAGGTCGAAATGTGCAGCTTTCTTACCTGCAATGAAGGATGGAAATGGCCTTTCACGTTATCGTGCTGATTTTCATGAGATTGAGCAAATTGGGAGGGGGAACTTCAGTCATGTATTTAAAGTCTTGAACCGAATTGATGGTTGCTTGTATGCTGTGAAACAAAGCATTAGGCAGTTGCATCAGGACACAGAAAGGTTGCTTACTCATGGTTTGGGTATATCTTTCACTTATTTAAGCTATTTTCCTTTTATGATGCATAAGGTATTTGTATTCTTTACAGGAGAAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

6.31

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02970
fragaria_vesca	FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040
malus_domestica	MD03G1283400.v1.1 MD11G1303200.v1.1
prunus_persica	Prupe.8G256300_v2.0.a1
pyrus_communis	pycom03g22420 pycom11g26490
rosa_chinensis	RchiOBHm_Chr6g0293261
rosa_laevigata	RLG00000011963
rosa_multiflora	Rmu_ssc0000162.1_g000031
rosa_roxburghii	Rroxscaffold_7G00174300
rosa_rugosa	Rorug06G0233800
rosa_samantha	Rh6AG346800 Rh6BG354200 Rh6CG360700 Rh6DG347200
rosa_wichuraiana	Rw6G030190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	4 cut(s)	155, 350, 363, 563
AcuI	CTGAAG	1 cut(s)	673
AcyI	GRCGYC	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	195
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	83, 602, 822, 874
AluI	AGCT	4 cut(s)	83, 602, 822, 874
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	4 cut(s)	155, 350, 363, 563
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	8, 501
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	26, 51, 217
AvaII	GGWCC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	355
BbsI	GAAGAC	2 cut(s)	119, 467
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	3 cut(s)	176, 617, 716
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	619
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	197, 230
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	18, 357
BmrFI	CCNGG	2 cut(s)	197, 230
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	4 cut(s)	394, 538, 772, 828
BmuI	ACTGGG	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	119, 467
BpmI	CTGGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bse1I	ACTGG	2 cut(s)	91, 123
Bse3DI	GCAATG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	5 cut(s)	178, 187, 276, 553, 628
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	91, 123
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	611
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	193, 618
BshFI	GGCC	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	230, 296
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	633
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	160, 355, 568
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	18, 357
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	4 cut(s)	155, 350, 363, 563
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	91, 123
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	160, 355, 568
BssNI	GRCGYC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	63, 310, 445
BstACI	GRCGYC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	38, 191, 365
BstF5I	GGATG	5 cut(s)	178, 187, 276, 553, 628
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 501
BstKTI	GATC	3 cut(s)	163, 358, 571
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	160, 355, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	197
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	195, 228
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	611
BstV2I	GAAGAC	2 cut(s)	119, 467
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	5 cut(s)	178, 187, 276, 553, 628
BtsIMutI	CAGTG	1 cut(s)	98
BveI	ACCTGC	1 cut(s)	619
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	2 cut(s)	8, 501
Cfr13I	GGNCC	1 cut(s)	17
CseI	GACGC	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	5 cut(s)	10, 522, 659, 695, 791
CviJI	RGCY	9 cut(s)	31, 48, 83, 195, 369, 602, 633, 822, 874
CviKI_1	RGCY	9 cut(s)	31, 48, 83, 195, 369, 602, 633, 822, 874
DdeI	CTNAG	3 cut(s)	38, 191, 365
DpnI	GATC	3 cut(s)	162, 357, 570
DpnII	GATC	3 cut(s)	160, 355, 568
DraI	TTTAAA	2 cut(s)	543, 703
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	843
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	5 cut(s)	13, 525, 662, 698, 794
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	5 cut(s)	9, 521, 658, 694, 790
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	5 cut(s)	185, 194, 263, 560, 635
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	7, 500
GluI	GCNGC	1 cut(s)	600
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	2 cut(s)	230, 296
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	2 cut(s)	8, 501
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	13, 525, 662, 698, 794
Hin6I	GCGC	2 cut(s)	6, 499
HinP1I	GCGC	2 cut(s)	6, 499
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	4 cut(s)	87, 104, 385, 532
HpaII	CCGG	2 cut(s)	230, 296
HphI	GGTGA	3 cut(s)	26, 51, 217
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	4 cut(s)	76, 118, 240, 355
Hpy188III	TCNNGA	7 cut(s)	101, 215, 296, 389, 659, 709, 767
Hpy8I	GTNNAC	1 cut(s)	329
Hpy99I	CGWCG	2 cut(s)	113, 330
HpyAV	CCTTC	4 cut(s)	7, 107, 141, 613
HpyCH4III	ACNGT	3 cut(s)	63, 310, 445
HpyCH4IV	ACGT	2 cut(s)	245, 640
HpyCH4V	TGCA	8 cut(s)	210, 264, 407, 488, 599, 614, 763, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	3 cut(s)	38, 191, 365
HpySE526I	ACGT	2 cut(s)	245, 640
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	13, 525, 662, 698, 794
HspAI	GCGC	2 cut(s)	6, 499
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	160, 355, 568
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	4 cut(s)	394, 538, 772, 828
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	245, 640
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	162, 357, 570
MboI	GATC	3 cut(s)	160, 355, 568
MboII	GAAGA	4 cut(s)	119, 126, 196, 472
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	6 cut(s)	70, 166, 408, 469, 672, 717
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	99, 141
MnlI	CCTC	8 cut(s)	124, 148, 167, 315, 385, 525, 528, 672
Mph1103I	ATGCAT	1 cut(s)	843
MroI	TCCGGA	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	7 cut(s)	249, 312, 528, 542, 702, 818, 877
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	2 cut(s)	230, 296
MspR9I	CCNGG	2 cut(s)	197, 230
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	160, 355, 568
NlaIII	CATG	5 cut(s)	13, 525, 662, 698, 794
NlaIV	GGNNCC	2 cut(s)	18, 357
NsiI	ATGCAT	1 cut(s)	843
OliI	CACNNNNGTG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	658
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	87, 385, 532
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PshAI	GACNNNNGTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	18, 357
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	327
SaqAI	TTAA	7 cut(s)	249, 312, 528, 542, 702, 818, 877
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	3 cut(s)	160, 355, 568
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	197, 230
SfaNI	GCATC	4 cut(s)	394, 538, 772, 828
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	6 cut(s)	70, 166, 408, 469, 672, 717
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	195, 228
TaaI	ACNGT	3 cut(s)	63, 310, 445
TaiI	ACGT	2 cut(s)	248, 643
TaqI	TCGA	4 cut(s)	85, 159, 328, 590
TasI	AATT	6 cut(s)	70, 166, 408, 469, 672, 717
TfiI	GAWTC	3 cut(s)	87, 385, 532
Tru1I	TTAA	7 cut(s)	249, 312, 528, 542, 702, 818, 877
Tru9I	TTAA	7 cut(s)	249, 312, 528, 542, 702, 818, 877
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	599
TspDTI	ATGAA	3 cut(s)	26, 632, 647
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	98
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.