Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011280

Physical Location & Seq

Genomic Coordinates Reverse (-)

29057780 .. 29060830

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAATCGGAGGGAGATGAAGGGAGCGCTACCGAGGCTTCAGCTAGGGGAAACCCACCAATCGGCGTTTTCCACGTCATCATCGAACCCCTCTCGCTTCCAGAACCTTCTGGAAGCCGGAGCTGCCGACGGCAGCCTTCCCTCCTCCGCTCCTCTCGGCACCGACGTTGACCCCAGTTTCGACGACCGGGAGTTCATACTCAGCCAAGACTTCTTCTGCACTCCCGATTATATCACACCGGATAATCAGCATATGGTGAACGGCTGGGATTGCAGCAAGCTGGAAGATATCCCTTGCCCCAGATCACCCGAGAAATCGAATACCGTTAAGTCGAAGAGGCGCAGGCAGGATCAGATTGATGCAGATGACATCTCATTGAATCCTCTCAGCCCTACGTTGTTCGGAAATGAGCCAGTAGTTGAGCTTGAGAAAGATGTTTTTGGCATGGATGAGGCTGTGATGGAGAAACCAATAGCAACAGAACCACGGAAGAAGCAAAATTATGTATCTCAATCTGCAGTGGCTTTACGCTGTCGTGTCATGCCTCCTCCGTGCTTGAAGAATCCTTATTTGAAGGATGCTTCAGAAATTGGCATTGATCCTTTTGGCAACCAAAGATCAAAGGCTTTTTTCCCTGTAATTATGGGCGGAAATGGCCTTTCGCGCTACTGTGCTGATTTTCATGAGATTGAGCAAATCGGCAGTGGGTACTTCAGTCAAGTATTCAAAGTCTTGAACAGAATTGATGGTTGTTTGTATGCAGTGAAACGTAGCATGAAGCAGTTGCATCAGGATACAGAAAGGAGAAAGGCTATGATGGAAGTTCAATCTTTGGCAGCTTTAGGGTCCCATGAAAACATTGTTGGATACTACTCGTCTTGGTTTGACAATGAGCAGCTGCACATTCAGATGGAACTATGTGATTACAGCTTATCCATCAACAAGTTTTCCCGACCATTCAAAGAGGGGGAGATTTTAGAAGCCTTTTATCAGGTTGCAAAAGCGTTGCAGTTTATACACGGGCGAGGAATAGCTCACTTAGATGTAAAACCTGATAATATATATGTGAAGAATGGTGTTTATAAGCTTGGTGACTTTGGATGTGCAACTCTACTTGACAACAGCCTGCCAATTGAAGAGGGTGATGCTCGATATATGCCTCAAGAAATCCTGAATGAGAAATATGATGATCTTGATAAGGCCGATATCTTCTCCTTGGGAATTGCTGTTTATGAGCTTATTAGAGGTTCACCTTTGCCAGAATCAGGACCTCAAATTTTAAATCTCAGGGAGGGAAAGTTGCCACTCCTTCCTGGTCATTCGTTGCAATTTCAGAACTTACTCAAGGTCATGTTGGATACAAATCCAGTCTGGAGGCCGTCAGCGAAAGATTTAGTCGAAAATCCAATTTTTGACAAGGTGCGGCGAAATGGACGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

481

Amino Acids

54.04

Weight (kDa)

5.46

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	227 - 470	2e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	230 - 467	5.4e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02970
fragaria_vesca	FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040
malus_domestica	MD03G1283400.v1.1 MD11G1303200.v1.1
prunus_persica	Prupe.8G256300_v2.0.a1
pyrus_communis	pycom03g22420 pycom11g26490
rosa_chinensis	RchiOBHm_Chr6g0293261
rosa_laevigata	RLG00000011963
rosa_multiflora	Rmu_ssc0000162.1_g000031
rosa_roxburghii	Rroxscaffold_7G00174300
rosa_rugosa	Rorug06G0233800
rosa_samantha	Rh6AG346800 Rh6BG354200 Rh6CG360700 Rh6DG347200
rosa_wichuraiana	Rw6G030190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1083
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	149
AccII	CGCG	1 cut(s)	664
AciI	CCGC	3 cut(s)	147, 648, 1423
AclWI	GGATC	2 cut(s)	357, 593
AcsI	RAATTY	1 cut(s)	1275
AcuI	CTGAAG	3 cut(s)	23, 567, 697
AfaI	GTAC	1 cut(s)	710
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	61, 1265
AgsI	TTSAA	8 cut(s)	379, 559, 574, 727, 736, 827, 961, 1136
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	1312
AjuI	GAANNNNNNNTTGG	2 cut(s)	846, 878
AlwI	GGATC	2 cut(s)	357, 593
Ama87I	CYCGRG	1 cut(s)	308
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	3 cut(s)	655, 1200, 1376
ApeKI	GCWGC	6 cut(s)	122, 132, 273, 836, 895, 898
ApoI	RAATTY	1 cut(s)	1275
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	3 cut(s)	28, 342, 666
AspS9I	GGNCC	2 cut(s)	846, 1268
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	5 cut(s)	268, 297, 1103, 1154, 1242
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	846, 1268
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	6 cut(s)	109, 144, 285, 848, 885, 907
BccI	CCATC	5 cut(s)	454, 740, 811, 904, 944
BceAI	ACGGC	3 cut(s)	145, 277, 1363
BciT130I	CCWGG	1 cut(s)	1314
BciVI	GTATCC	3 cut(s)	787, 860, 1351
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	2 cut(s)	44, 1441
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	3 cut(s)	787, 860, 1351
BisI	GCNGC	7 cut(s)	123, 133, 274, 837, 896, 899, 1424
BlsI	GCNGC	7 cut(s)	124, 134, 275, 838, 897, 900, 1425
Bme1390I	CCNGG	2 cut(s)	188, 1314
Bme18I	GGWCC	2 cut(s)	846, 1268
BmeT110I	CYCGRG	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	846, 1268
BmiI	GGNNCC	3 cut(s)	160, 847, 848
BmrFI	CCNGG	2 cut(s)	188, 1314
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	4 cut(s)	349, 568, 796, 1135
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	1393
BpuEI	CTTGAG	3 cut(s)	446, 1146, 1328
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaJI	CCNNGG	3 cut(s)	32, 485, 1215
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	1283, 1313
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 1265
Bse1I	ACTGG	3 cut(s)	174, 413, 1367
Bse8I	GATNNNNATC	1 cut(s)	1362
BseBI	CCWGG	1 cut(s)	1314
BseDI	CCNNGG	3 cut(s)	32, 485, 1215
BseGI	GGATG	3 cut(s)	454, 583, 1106
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	2 cut(s)	61, 1265
BseMII	CTCAG	3 cut(s)	214, 400, 1300
BseNI	ACTGG	3 cut(s)	174, 413, 1367
BseRI	GAGGAG	3 cut(s)	133, 141, 537
BseXI	GCAGC	6 cut(s)	109, 144, 285, 848, 885, 907
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	2 cut(s)	202, 884
Bsh1236I	CGCG	1 cut(s)	664
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	657, 1202, 1378
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	117, 187, 239
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	2 cut(s)	61, 1265
BsmFI	GGGAC	1 cut(s)	832
BsnI	GGCC	3 cut(s)	657, 1202, 1378
BsoBI	CYCGRG	1 cut(s)	308
Bsp143I	GATC	5 cut(s)	302, 349, 598, 617, 1189
BspACI	CCGC	3 cut(s)	147, 648, 1423
BspANI	GGCC	3 cut(s)	657, 1202, 1378
BspCNI	CTCAG	3 cut(s)	213, 399, 1299
BspFNI	CGCG	1 cut(s)	664
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	160, 847, 848
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	2 cut(s)	357, 593
BspT107I	GGYRCC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	174, 413, 1367
BssECI	CCNNGG	3 cut(s)	32, 485, 1215
BssMI	GATC	5 cut(s)	302, 349, 598, 617, 1189
BssT1I	CCWWGG	1 cut(s)	1215
Bst2UI	CCWGG	1 cut(s)	1314
Bst4CI	ACNGT	2 cut(s)	325, 671
Bst6I	CTCTTC	2 cut(s)	329, 1131
BstC8I	GCNNGC	3 cut(s)	278, 344, 1127
BstDEI	CTNAG	4 cut(s)	200, 386, 1039, 1286
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	454, 583, 1106
BstFNI	CGCG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 342, 666
BstKTI	GATC	5 cut(s)	305, 352, 601, 620, 1192
BstMBI	GATC	5 cut(s)	302, 349, 598, 617, 1189
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 122, 270, 654, 663
BstNI	CCWGG	1 cut(s)	1314
BstSCI	CCNGG	2 cut(s)	186, 1312
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	664
BstV1I	GCAGC	6 cut(s)	109, 144, 285, 848, 885, 907
BsuI	GTATCC	3 cut(s)	787, 860, 1351
BsuRI	GGCC	3 cut(s)	657, 1202, 1378
BtgI	CCRYGG	1 cut(s)	485
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	454, 583, 1106
BtsI	GCAGTG	3 cut(s)	525, 709, 768
BtsIMutI	CAGTG	3 cut(s)	525, 709, 768
Cac8I	GCNNGC	3 cut(s)	278, 344, 1127
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	3 cut(s)	28, 342, 666
Cfr13I	GGNCC	2 cut(s)	846, 1268
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	6 cut(s)	445, 541, 683, 775, 851, 1351
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	4 cut(s)	200, 386, 1039, 1286
DpnI	GATC	5 cut(s)	304, 351, 600, 619, 1191
DpnII	GATC	5 cut(s)	302, 349, 598, 617, 1189
DraI	TTTAAA	1 cut(s)	1281
Eam1104I	CTCTTC	2 cut(s)	329, 1131
EarI	CTCTTC	2 cut(s)	329, 1131
EciI	GGCGGA	1 cut(s)	663
Eco130I	CCWWGG	1 cut(s)	1215
Eco32I	GATATC	2 cut(s)	289, 1207
Eco47I	GGWCC	2 cut(s)	846, 1268
Eco47III	AGCGCT	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	23, 567, 697
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	846, 1268
EcoRII	CCWGG	1 cut(s)	1312
EcoRV	GATATC	2 cut(s)	289, 1207
EcoT14I	CCWWGG	1 cut(s)	1215
ErhI	CCWWGG	1 cut(s)	1215
FaeI	CATG	6 cut(s)	448, 544, 686, 778, 854, 1354
FaqI	GGGAC	1 cut(s)	832
FatI	CATG	6 cut(s)	444, 540, 682, 774, 850, 1350
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	7 cut(s)	123, 133, 274, 837, 896, 899, 1424
FokI	GGATG	3 cut(s)	461, 590, 1113
Fsp4HI	GCNGC	7 cut(s)	123, 133, 274, 837, 896, 899, 1424
FspBI	CTAG	2 cut(s)	44, 1441
GlaI	GCGC	3 cut(s)	27, 341, 665
GluI	GCNGC	7 cut(s)	123, 133, 274, 837, 896, 899, 1424
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	1393
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	657, 1202, 1378
HapII	CCGG	3 cut(s)	117, 187, 239
HhaI	GCGC	3 cut(s)	28, 342, 666
Hin1II	CATG	6 cut(s)	448, 544, 686, 778, 854, 1354
Hin6I	GCGC	3 cut(s)	26, 340, 664
HinP1I	GCGC	3 cut(s)	26, 340, 664
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	1085
HinfI	GANTC	4 cut(s)	4, 379, 562, 1262
HpaII	CCGG	3 cut(s)	117, 187, 239
HphI	GGTGA	5 cut(s)	268, 297, 1103, 1154, 1242
Hpy166II	GTNNAC	3 cut(s)	169, 259, 1250
Hpy188I	TCNGA	6 cut(s)	9, 354, 404, 586, 909, 1335
Hpy8I	GTNNAC	3 cut(s)	169, 259, 1250
Hpy99I	CGWCG	3 cut(s)	131, 167, 185
HpyAV	CCTTC	5 cut(s)	13, 116, 146, 568, 1319
HpyCH4III	ACNGT	2 cut(s)	325, 671
HpyCH4IV	ACGT	4 cut(s)	74, 165, 395, 769
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 122, 270, 654, 663
HpyF3I	CTNAG	4 cut(s)	200, 386, 1039, 1286
HpySE526I	ACGT	4 cut(s)	74, 165, 395, 769
Hsp92II	CATG	6 cut(s)	448, 544, 686, 778, 854, 1354
HspAI	GCGC	3 cut(s)	26, 340, 664
KflI	GGGWCCC	1 cut(s)	846
Kzo9I	GATC	5 cut(s)	302, 349, 598, 617, 1189
LmnI	GCTCC	3 cut(s)	23, 119, 154
Lsp1109I	GCAGC	6 cut(s)	109, 144, 285, 848, 885, 907
LweI	GCATC	4 cut(s)	349, 568, 796, 1135
MaeI	CTAG	2 cut(s)	44, 1441
MaeII	ACGT	4 cut(s)	74, 165, 395, 769
MaeIII	GTNAC	1 cut(s)	1091
MalI	GATC	5 cut(s)	304, 351, 600, 619, 1191
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	5 cut(s)	302, 349, 598, 617, 1189
MboII	GAAGA	8 cut(s)	205, 296, 346, 502, 571, 1081, 1148, 1201
MfeI	CAATTG	1 cut(s)	1131
MluCI	AATT	9 cut(s)	499, 588, 639, 741, 1131, 1221, 1275, 1328, 1407
MmeI	TCCRAC	2 cut(s)	844, 1335
MseI	TTAA	2 cut(s)	327, 1280
MslI	CAYNNNNRTG	2 cut(s)	908, 1041
MspA1I	CMGCKG	1 cut(s)	898
MspI	CCGG	3 cut(s)	117, 187, 239
MspR9I	CCNGG	2 cut(s)	188, 1314
MunI	CAATTG	1 cut(s)	1131
MvaI	CCWGG	1 cut(s)	1314
MvnI	CGCG	1 cut(s)	664
MwoI	GCNNNNNNNGC	5 cut(s)	34, 122, 270, 654, 663
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	5 cut(s)	302, 349, 598, 617, 1189
NlaIII	CATG	6 cut(s)	448, 544, 686, 778, 854, 1354
NlaIV	GGNNCC	3 cut(s)	160, 847, 848
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	1091
PagI	TCATGA	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 162
PfeI	GAWTC	4 cut(s)	4, 379, 562, 1262
PkrI	GCNGC	7 cut(s)	124, 134, 275, 838, 897, 900, 1425
PpuMI	RGGWCCY	2 cut(s)	846, 1268
PsiI	TTATAA	1 cut(s)	1083
Psp5II	RGGWCCY	2 cut(s)	846, 1268
Psp6I	CCWGG	1 cut(s)	1312
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	1312
PspN4I	GGNNCC	3 cut(s)	160, 847, 848
PspPI	GGNCC	2 cut(s)	846, 1268
PspPPI	RGGWCCY	2 cut(s)	846, 1268
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	898
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	2 cut(s)	908, 1041
SaqAI	TTAA	2 cut(s)	327, 1280
SatI	GCNGC	7 cut(s)	123, 133, 274, 837, 896, 899, 1424
Sau3AI	GATC	5 cut(s)	302, 349, 598, 617, 1189
Sau96I	GGNCC	2 cut(s)	846, 1268
ScrFI	CCNGG	2 cut(s)	188, 1314
SfaNI	GCATC	4 cut(s)	349, 568, 796, 1135
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	846, 1268
SmiMI	CAYNNNNRTG	2 cut(s)	908, 1041
SmlI	CTYRAG	3 cut(s)	425, 1161, 1343
SmoI	CTYRAG	3 cut(s)	425, 1161, 1343
Sse9I	AATT	9 cut(s)	499, 588, 639, 741, 1131, 1221, 1275, 1328, 1407
SsiI	CCGC	3 cut(s)	147, 648, 1423
SspMI	CTAG	2 cut(s)	44, 1441
StyD4I	CCNGG	2 cut(s)	186, 1312
StyI	CCWWGG	1 cut(s)	1215
TaaI	ACNGT	2 cut(s)	325, 671
TaiI	ACGT	4 cut(s)	77, 168, 398, 772
TaqI	TCGA	6 cut(s)	83, 180, 317, 332, 1150, 1398
TasI	AATT	9 cut(s)	499, 588, 639, 741, 1131, 1221, 1275, 1328, 1407
TauI	GCSGC	1 cut(s)	1426
TfiI	GAWTC	4 cut(s)	4, 379, 562, 1262
Tru1I	TTAA	2 cut(s)	327, 1280
Tru9I	TTAA	2 cut(s)	327, 1280
TscAI	CASTG	3 cut(s)	525, 709, 768
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	6 cut(s)	122, 132, 273, 836, 895, 898
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	6 cut(s)	17, 32, 184, 671, 791, 867
TspGWI	ACGGA	2 cut(s)	502, 540
TspRI	CASTG	3 cut(s)	525, 709, 768
VpaK11BI	GGWCC	2 cut(s)	846, 1268
XapI	RAATTY	1 cut(s)	1275
XspI	CTAG	2 cut(s)	44, 1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.