Rorug06G0233800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
37633163 .. 37639143
5981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0233800.1

Sequence Viewer

Length: 1377 bp
ATGGAGGAGGATAGTCTCTGCAGATCGAATATTGGTGGTGAAGAGATGAAAGGGAAGGAGAAGAGAAAGTTGAGGCACCTTTTCGTGACGGTGTTCCTCTCTTCGCTTTCCATGTTCTTGGTGATTCCGGCCATAACCGACGTCACCATAGCGGCGGTTTGCCCCAGTCGGGAAAGCTGCTCTCTTGCCATTTACCTCTCTGGGTTTCAACAAGCGATCATAGGCATGGGAACGGTGGTGATGAATCCGGTAATTGGGAACCTGTCGGACCTCTATGGGAGGAAGGCTCTGCTCACATTCCCATTGACAGTATCCATTATCCCACTAGCAATATTGGCGTATAGCCGGGAGACCAACTTTTTCTATGCTTTCTATTTGCTGAGGACCCTAACTGCCATGACAAGCGAAGGCAGTGTCAACTGCCTCGCCCTCGCTTATGTGGCAGACAACATTTCAGAGGGAGAGAGAGTATCTGCATTTGGACTTCTATCTGGGTTTTTCTCCGCATCATTTGTATGTGGAACTTTAGCAGCTCGTTTCCTCCCCACTTCGTTAACATTTCAGGTTGCCGCCTTAGTATCAATGCTGGCAGCTGTTTACATGAGGATTTTTCTCGAGGAAATTAGGCCATCAGATCATGGGGATAGTACTTTGAGCCAGCCTATCTTGAAGGGATTAGAACCAGCACTAGAGCGAATCGCAGATGACGATTACTCTCCGAAGACGAAAATTGAATTTAAGAAGATCCCATCTGTTGGGGATCTTATTAGCTTACTCAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTATCTTCTTTCAGAGCCTAGCAGAAGGTGGCATGCAAGCTTCGGTCCTGTATTTCCTTAAGGCTCGTTTTCAGTTCGACAAAAATCAGTTTGCTGATATAATGCTGATTATGGGGATATCAGGAGCCATAACACAGATGATTTTCATGCCCATGATGGCACCTAAAATCGGAGAGGAAAAGATGCTGTCAATCGGGCTCTCACTGAACTGTATCAGTATGTTTCTAAACAGTATAGCGTGGTCACCTTGGGTTCCTTATGCAGCTACTGTGTTTTCTTCTTTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCATCAAAACAAGTTGGACCAAATGAACAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTTGCTCCATTGGTTTTCAGTCCTTTAACAGCTTTATTTTTGTCTGAAGATGCACCGTTCAATTTCCCTGGCTTCAGTATTATGTGCCTTGGACTTGCAACGATCATTGCCTTAATTCAGAGTACAATGATAAGGGCTTCTCCTCCTATTGCAAGTCACAATTTAGCCTAG

Protein Analysis

458

Amino Acids

49.59

Weight (kDa)

6.83

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 27 - 239 6.9e-20 Major Facilitator Superfamily
MFS_1 PF07690 271 - 438 1.1e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 75, 970
AccB7I CCANNNNNTGG 1 cut(s) 755
AciI CCGC 4 cut(s) 152, 155, 504, 570
AclWI GGATC 2 cut(s) 739, 768
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 2 cut(s) 1264, 1272
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 649, 1330
AfiI CCNNNNNNNGG 4 cut(s) 169, 254, 755, 980
AflII CTTAAG 1 cut(s) 869
AgsI TTSAA 4 cut(s) 209, 670, 734, 1267
AjnI CCWGG 1 cut(s) 1273
AluBI AGCT 8 cut(s) 177, 533, 593, 771, 803, 851, 1076, 1238
AluI AGCT 8 cut(s) 177, 533, 593, 771, 803, 851, 1076, 1238
Alw26I GTCTC 2 cut(s) 20, 344
AlwI GGATC 2 cut(s) 739, 768
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 2 cut(s) 129, 626
ApeKI GCWGC 5 cut(s) 177, 530, 590, 1073, 1122
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
AspS9I GGNCC 4 cut(s) 268, 384, 856, 1145
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 5 cut(s) 50, 133, 136, 250, 1047
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 4 cut(s) 268, 384, 856, 1145
BanI GGYRCC 2 cut(s) 75, 970
BanII GRGCYC 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 728
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 5 cut(s) 164, 542, 602, 1085, 1134
BccI CCATC 3 cut(s) 637, 757, 961
BciT130I CCWGG 1 cut(s) 1275
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 20, 344
BfaI CTAG 5 cut(s) 326, 689, 830, 1103, 1375
BfmI CTRYAG 1 cut(s) 19
BfrI CTTAAG 1 cut(s) 869
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 1074, 1123
BlsI GCNGC 7 cut(s) 154, 179, 532, 571, 592, 1075, 1124
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 347, 1275
Bme18I GGWCC 4 cut(s) 268, 384, 856, 1145
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 4 cut(s) 268, 384, 856, 1145
BmiI GGNNCC 6 cut(s) 77, 260, 386, 937, 972, 1065
BmrFI CCNGG 2 cut(s) 347, 1275
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 5 cut(s) 515, 984, 1139, 1163, 1246
BmuI ACTGGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 728
BplI GAGNNNNNCTC 2 cut(s) 271, 303
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 1152
BpuMI CCSGG 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 1058, 1273, 1294
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 254, 755, 980
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 2 cut(s) 1125, 1311
BseBI CCWGG 1 cut(s) 1275
BseDI CCNNGG 3 cut(s) 1058, 1273, 1294
BseGI GGATG 1 cut(s) 1178
BseLI CCNNNNNNNGG 4 cut(s) 169, 254, 755, 980
BseMI GCAATG 2 cut(s) 1125, 1311
BseMII CTCAG 2 cut(s) 371, 790
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 2 cut(s) 20, 1338
BseXI GCAGC 5 cut(s) 164, 542, 602, 1085, 1134
BshFI GGCC 2 cut(s) 131, 628
BshNI GGYRCC 2 cut(s) 75, 970
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 3 cut(s) 128, 248, 346
BslI CCNNNNNNNGG 4 cut(s) 169, 254, 755, 980
BsmAI GTCTC 2 cut(s) 20, 344
BsnI GGCC 2 cut(s) 131, 628
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 1011
Bsp143I GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
BspACI CCGC 4 cut(s) 152, 155, 504, 570
BspANI GGCC 2 cut(s) 131, 628
BspCNI CTCAG 2 cut(s) 372, 789
BspLI GGNNCC 6 cut(s) 77, 260, 386, 937, 972, 1065
BspMAI CTGCAG 1 cut(s) 23
BspPI GGATC 2 cut(s) 739, 768
BspT107I GGYRCC 2 cut(s) 75, 970
BspTI CTTAAG 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 2 cut(s) 1125, 1311
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 3 cut(s) 1058, 1273, 1294
BssMI GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 1058, 1294
Bst2UI CCWGG 1 cut(s) 1275
Bst4CI ACNGT 7 cut(s) 91, 235, 310, 1022, 1043, 1081, 1263
Bst6I CTCTTC 3 cut(s) 36, 56, 106
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 869
BstC8I GCNNGC 4 cut(s) 588, 659, 845, 849
BstDEI CTNAG 3 cut(s) 380, 574, 776
BstEII GGTNACC 1 cut(s) 1053
BstF5I GGATG 1 cut(s) 1178
BstKTI GATC 6 cut(s) 26, 219, 637, 747, 763, 1311
BstMAI GTCTC 2 cut(s) 20, 344
BstMBI GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
BstMWI GCNNNNNNNGC 4 cut(s) 335, 440, 1103, 1182
BstNI CCWGG 1 cut(s) 1275
BstNSI RCATGY 1 cut(s) 847
BstPI GGTNACC 1 cut(s) 1053
BstSCI CCNGG 2 cut(s) 345, 1273
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 5 cut(s) 164, 542, 602, 1085, 1134
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 2 cut(s) 744, 760
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 2 cut(s) 744, 760
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 2 cut(s) 131, 628
BtsCI GGATG 1 cut(s) 1178
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 418, 1013
Cac8I GCNNGC 4 cut(s) 588, 659, 845, 849
CaiI CAGNNNCTG 1 cut(s) 1079
Cfr13I GGNCC 4 cut(s) 268, 384, 856, 1145
Csp6I GTAC 2 cut(s) 648, 1329
CviAII CATG 8 cut(s) 112, 226, 397, 601, 638, 844, 958, 964
CviQI GTAC 2 cut(s) 648, 1329
DdeI CTNAG 3 cut(s) 380, 574, 776
DpnI GATC 6 cut(s) 25, 218, 636, 746, 762, 1310
DpnII GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 36, 56, 106
EarI CTCTTC 3 cut(s) 36, 56, 106
Eco130I CCWWGG 2 cut(s) 1058, 1294
Eco24I GRGCYC 1 cut(s) 1011
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 930
Eco47I GGWCC 4 cut(s) 268, 384, 856, 1145
Eco57I CTGAAG 2 cut(s) 1264, 1272
Eco88I CYCGRG 1 cut(s) 614
Eco91I GGTNACC 1 cut(s) 1053
EcoO109I RGGNCCY 1 cut(s) 384
EcoO65I GGTNACC 1 cut(s) 1053
EcoRII CCWGG 1 cut(s) 1273
EcoRV GATATC 1 cut(s) 930
EcoT14I CCWWGG 2 cut(s) 1058, 1294
EcoT22I ATGCAT 1 cut(s) 1178
EcoT38I GRGCYC 1 cut(s) 1011
ErhI CCWWGG 2 cut(s) 1058, 1294
FaeI CATG 8 cut(s) 115, 229, 400, 604, 641, 847, 961, 967
FatI CATG 8 cut(s) 111, 225, 396, 600, 637, 843, 957, 963
Fnu4HI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 1074, 1123
FokI GGATG 1 cut(s) 1185
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 1074, 1123
FspBI CTAG 5 cut(s) 326, 689, 830, 1103, 1375
GluI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 1074, 1123
HaeIII GGCC 2 cut(s) 131, 628
HapII CCGG 3 cut(s) 128, 248, 346
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 8 cut(s) 115, 229, 400, 604, 641, 847, 961, 967
HincII GTYRAC 2 cut(s) 418, 555
HindII GTYRAC 2 cut(s) 418, 555
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 3 cut(s) 124, 244, 696
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 3 cut(s) 128, 248, 346
HphI GGTGA 5 cut(s) 50, 133, 136, 250, 1047
Hpy166II GTNNAC 3 cut(s) 418, 555, 598
Hpy188I TCNGA 8 cut(s) 268, 457, 634, 720, 825, 983, 1252, 1326
Hpy188III TCNNGA 6 cut(s) 85, 170, 614, 667, 778, 933
Hpy8I GTNNAC 3 cut(s) 418, 555, 598
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 5 cut(s) 49, 277, 401, 664, 830
HpyCH4III ACNGT 7 cut(s) 91, 235, 310, 1022, 1043, 1081, 1263
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 9 cut(s) 21, 476, 847, 1073, 1130, 1176, 1259, 1304, 1358
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 440, 1103, 1182
HpyF3I CTNAG 3 cut(s) 380, 574, 776
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 8 cut(s) 115, 229, 400, 604, 641, 847, 961, 967
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
LmnI GCTCC 2 cut(s) 935, 1216
Lsp1109I GCAGC 5 cut(s) 164, 542, 602, 1085, 1134
LweI GCATC 5 cut(s) 515, 984, 1139, 1163, 1246
MaeI CTAG 5 cut(s) 326, 689, 830, 1103, 1375
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 5 cut(s) 85, 142, 795, 1053, 1361
MalI GATC 6 cut(s) 25, 218, 636, 746, 762, 1310
MboI GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
MboII GAAGA 8 cut(s) 53, 73, 93, 733, 754, 808, 1080, 1265
MflI RGATCY 2 cut(s) 744, 760
MhlI GDGCHC 1 cut(s) 1011
MluCI AATT 7 cut(s) 252, 621, 729, 734, 1267, 1320, 1366
MmeI TCCRAC 2 cut(s) 246, 1123
Mph1103I ATGCAT 1 cut(s) 1178
MseI TTAA 5 cut(s) 554, 738, 870, 1232, 1319
MslI CAYNNNNRTG 3 cut(s) 224, 514, 962
MspA1I CMGCKG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 3 cut(s) 128, 248, 346
MspR9I CCNGG 2 cut(s) 347, 1275
MvaI CCWGG 1 cut(s) 1275
MwoI GCNNNNNNNGC 4 cut(s) 335, 440, 1103, 1182
NciI CCSGG 1 cut(s) 347
NdeII GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
NlaIII CATG 8 cut(s) 115, 229, 400, 604, 641, 847, 961, 967
NlaIV GGNNCC 6 cut(s) 77, 260, 386, 937, 972, 1065
NmuCI GTSAC 5 cut(s) 85, 142, 795, 1053, 1361
NsiI ATGCAT 1 cut(s) 1178
NspI RCATGY 1 cut(s) 847
PaeI GCATGC 1 cut(s) 847
PaeR7I CTCGAG 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfeI GAWTC 3 cut(s) 124, 244, 696
PflFI GACNNNGTC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 7 cut(s) 154, 179, 532, 571, 592, 1075, 1124
PpuMI RGGWCCY 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 1273
PspEI GGTNACC 1 cut(s) 1053
PspGI CCWGG 1 cut(s) 1273
PspN4I GGNNCC 6 cut(s) 77, 260, 386, 937, 972, 1065
PspPI GGNCC 4 cut(s) 268, 384, 856, 1145
PspPPI RGGWCCY 1 cut(s) 384
PstI CTGCAG 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 2 cut(s) 744, 760
PsyI GACNNNGTC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 2 cut(s) 649, 1330
RsaNI GTAC 2 cut(s) 648, 1329
RseI CAYNNNNRTG 3 cut(s) 224, 514, 962
SaqAI TTAA 5 cut(s) 554, 738, 870, 1232, 1319
SatI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 1074, 1123
Sau3AI GATC 6 cut(s) 23, 216, 634, 744, 760, 1308
Sau96I GGNCC 4 cut(s) 268, 384, 856, 1145
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 347, 1275
SduI GDGCHC 1 cut(s) 1011
SfaNI GCATC 5 cut(s) 515, 984, 1139, 1163, 1246
SfcI CTRYAG 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 614
SinI GGWCC 4 cut(s) 268, 384, 856, 1145
SlaI CTCGAG 1 cut(s) 614
SmiMI CAYNNNNRTG 3 cut(s) 224, 514, 962
SmlI CTYRAG 3 cut(s) 614, 869, 1167
SmoI CTYRAG 3 cut(s) 614, 869, 1167
SphI GCATGC 1 cut(s) 847
Sse9I AATT 7 cut(s) 252, 621, 729, 734, 1267, 1320, 1366
SsiI CCGC 4 cut(s) 152, 155, 504, 570
SspI AATATT 2 cut(s) 31, 333
SspMI CTAG 5 cut(s) 326, 689, 830, 1103, 1375
StyD4I CCNGG 2 cut(s) 345, 1273
StyI CCWWGG 2 cut(s) 1058, 1294
TaaI ACNGT 7 cut(s) 91, 235, 310, 1022, 1043, 1081, 1263
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 26, 615, 888
TaqII GACCGA 1 cut(s) 844
TasI AATT 7 cut(s) 252, 621, 729, 734, 1267, 1320, 1366
TatI WGTACW 2 cut(s) 647, 1328
TauI GCSGC 2 cut(s) 155, 572
TfiI GAWTC 3 cut(s) 124, 244, 696
Tru1I TTAA 5 cut(s) 554, 738, 870, 1232, 1319
Tru9I TTAA 5 cut(s) 554, 738, 870, 1232, 1319
TscAI CASTG 2 cut(s) 418, 1020
TseFI GTSAC 5 cut(s) 85, 142, 795, 1053, 1361
TseI GCWGC 5 cut(s) 177, 530, 590, 1073, 1122
Tsp45I GTSAC 5 cut(s) 85, 142, 795, 1053, 1361
TspDTI ATGAA 4 cut(s) 62, 257, 946, 1167
TspRI CASTG 2 cut(s) 418, 1020
Tth111I GACNNNGTC 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 755
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 4 cut(s) 268, 384, 856, 1145
XapI RAATTY 1 cut(s) 734
XceI RCATGY 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 614
XspI CTAG 5 cut(s) 326, 689, 830, 1103, 1375
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.