Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

23672973 .. 23677096

Gene Structure 4124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGCTACAGATGTTATACTGCCAAGCTCTGTGGAAGAGGAGGAAACTCGGCATGGGGATCAAGGCTCTGAACAGATCAAAGAGAAGCAACTCGTTTCAAGACAAAAGTTTCAAAGATTTGATTCTTTGGATATCGAGTCTCGCAGTATCAATAATCATAGGAATTCCAAGGGAGCGTCGTGGTCCGTAATACTGACTCTGGCATTTCAGAGCATTGGAGTTGTCTATGGAGATCTTGGGACTTCACCACTGTATGTGTTCTCGAGCACCTTCCCTAATGGAATCAAAGATAAAGATGACATCTTGGGTGTTCTTTCTTTGATCCTTTATACAGTCACATTGATCCCTTTGATCAAGTATGTTCTGATCGTCCTACAAGCAAATGATAACGGCGATTCGACAATTAGTTTAACTCCGAGTCAACAAGCTGAGGATTCCGATGTTTCAAATTTCAAACTTGAAGTTCCTAGTAGACGACTAAAACTGGCATCAAGGCTTAAATCTAAACTGGAGAGCAGTCAATTTGCTAAAGTTTTCTTACTCTTTGCCACTTTGTTGGGCACTTCCATGGTCATTGGTGATGGTGTCCTCACTCCTTGCATCTCAGTTCTATCAGCTGTGGTTGGCATCAAAGGAGCTACGTCTGCGATGACCGAAGATATGATTGTGTGGATATCGGTAGCCATCTTGATTTTCCTTTTTATGATCCAAAGATTTGGAACTGACAAATACTTCGCAAGCATTGGACAAGCCTCTTTGGACATTGGACAAGCCTCTTTTCTTGGACAAGCCTCTTTTCTTTACATTGGACAAGCCTCTTTTCTTCGCAAGCATGCCGATTTGGTTGCTGATACCTTCTTCAAGTCTATACCAGTGCTTTACAAGTTTGACCAAGGGGGCTATCTTCCACTTGCCTTTGCCACTCTAATGGTGATCATAATGTTCTTTTGGAATGATGTTTATCGAAGAAAGTACTACTATGAGGTTGAACACAAAGTTTCTCCTGACAAGTTCAAGCAGATTGCTGATGATAGAAAAATTTGTCGTATGCCTGGCTTCGCCATATTTTACTCAGAACTTACATTTACCTATAAGCAAGATTCCGAGGAGCGTCTCCTTTTCCGTCGAATAGAGCCCATACAACTTAATGTATTTCGATGTGTTGCAAGGTACGGGTATACAGATCTCCACAATGCACAAGAACCGTTTGAAGAATTGTTGGTAAAAAAGCTGAAAGAGTTTGTGAAAGATAGTTGTTCCATACCTCAACAAACAAGTTACGAAGGGGTGTGTGAAAAGCAAGAAGAATTAAATGATGGGATGGTTGACAAAACCAATGAATTTGTTGAGATACAACAAGAAGCGTTGATGGATGCTGAGGTTCAGCTTCACACCATAGATGAAGCATGGAGTTCAGGGGTTACTCACCTCATTGGTGAAAGTGAAGTCATGGCTGCCAAAGGATCTGGTATAGCTAAAAGAATTCTGATTGATTATGCTTACAATTTTATGAAGAGGAACTTGAGACAGAGAAAAGAATTGTTTGATATTCCTCGCGAGCGCATGTTAAAAATGGGTATGACTTATGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

532

Amino Acids

60.24

Weight (kDa)

5.61

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	67 - 243	1.3e-46	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	368 - 531	7.8e-14	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	472, 1178
AccII	CGCG	1 cut(s)	1557
AclWI	GGATC	5 cut(s)	66, 316, 337, 700, 1471
AcsI	RAATTY	5 cut(s)	163, 448, 1038, 1340, 1482
AfaI	GTAC	2 cut(s)	974, 1172
AgsI	TTSAA	9 cut(s)	99, 113, 447, 454, 461, 862, 989, 1015, 1211
AjnI	CCWGG	1 cut(s)	1051
AluBI	AGCT	7 cut(s)	27, 428, 617, 638, 1231, 1387, 1475
AluI	AGCT	7 cut(s)	27, 428, 617, 638, 1231, 1387, 1475
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	3 cut(s)	144, 1118, 1519
AlwI	GGATC	5 cut(s)	66, 316, 337, 700, 1471
Ama87I	CYCGRG	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	1454
ApoI	RAATTY	5 cut(s)	163, 448, 1038, 1340, 1482
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspLEI	GCGC	1 cut(s)	1563
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	5 cut(s)	237, 590, 943, 1418, 1448
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	1137
Bbv12I	GWGCWC	1 cut(s)	269
BbvCI	CCTCAGC	2 cut(s)	429, 1377
BbvI	GCAGC	1 cut(s)	1441
BccI	CCATC	5 cut(s)	575, 692, 1310, 1315, 1363
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	1 cut(s)	1053
BclI	TGATCA	2 cut(s)	351, 933
BcoDI	GTCTC	3 cut(s)	144, 1118, 1519
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	6
BglII	AGATCT	2 cut(s)	232, 1183
BisI	GCNGC	1 cut(s)	1455
BlsI	GCNGC	1 cut(s)	1456
BmcAI	AGTACT	1 cut(s)	974
Bme1390I	CCNGG	1 cut(s)	1053
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	1053
BmsI	GCATC	4 cut(s)	497, 609, 636, 1363
BpmI	CTGGAG	1 cut(s)	530
Bpu10I	CCTNAGC	2 cut(s)	429, 1377
BpuEI	CTTGAG	1 cut(s)	1543
BsaBI	GATNNNNATC	1 cut(s)	960
BsaJI	CCNNGG	4 cut(s)	168, 567, 892, 1104
Bse1I	ACTGG	3 cut(s)	489, 513, 872
Bse8I	GATNNNNATC	1 cut(s)	960
BseBI	CCWGG	1 cut(s)	1053
BseDI	CCNNGG	4 cut(s)	168, 567, 892, 1104
BseGI	GGATG	2 cut(s)	1326, 1378
BseJI	GATNNNNATC	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	420, 618, 1086, 1368
BseNI	ACTGG	3 cut(s)	489, 513, 872
BseRI	GAGGAG	2 cut(s)	53, 1121
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	1 cut(s)	1441
Bsh1236I	CGCG	1 cut(s)	1557
BsiHKAI	GWGCWC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	3 cut(s)	144, 1118, 1519
BsmBI	CGTCTC	1 cut(s)	1118
BsmFI	GGGAC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	3 cut(s)	269, 563, 1137
Bsp19I	CCATGG	1 cut(s)	567
Bsp68I	TCGCGA	1 cut(s)	1557
BspCNI	CTCAG	4 cut(s)	421, 617, 1085, 1369
BspFNI	CGCG	1 cut(s)	1557
BspPI	GGATC	5 cut(s)	66, 316, 337, 700, 1471
BsrI	ACTGG	3 cut(s)	489, 513, 872
BssECI	CCNNGG	4 cut(s)	168, 567, 892, 1104
BssNAI	GTATAC	1 cut(s)	1179
BssT1I	CCWWGG	3 cut(s)	168, 567, 892
Bst1107I	GTATAC	1 cut(s)	1179
Bst2UI	CCWGG	1 cut(s)	1053
Bst4CI	ACNGT	3 cut(s)	252, 334, 1206
Bst6I	CTCTTC	2 cut(s)	30, 1508
BstC8I	GCNNGC	4 cut(s)	739, 830, 834, 1559
BstDEI	CTNAG	4 cut(s)	429, 604, 1072, 1377
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	1326, 1378
BstFNI	CGCG	1 cut(s)	1557
BstHHI	GCGC	1 cut(s)	1563
BstMAI	GTCTC	3 cut(s)	144, 1118, 1519
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	1 cut(s)	1053
BstNSI	RCATGY	2 cut(s)	836, 1567
BstSCI	CCNGG	1 cut(s)	1051
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	1557
BstV1I	GCAGC	1 cut(s)	1441
BstX2I	RGATCY	3 cut(s)	232, 1183, 1463
BstXI	CCANNNNNNTGG	3 cut(s)	556, 716, 928
BstYI	RGATCY	3 cut(s)	232, 1183, 1463
BstZ17I	GTATAC	1 cut(s)	1179
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	1326, 1378
BtsIMutI	CAGTG	2 cut(s)	248, 879
BtuMI	TCGCGA	1 cut(s)	1557
Cac8I	GCNNGC	4 cut(s)	739, 830, 834, 1559
CfoI	GCGC	1 cut(s)	1563
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	2 cut(s)	165, 1100
Csp6I	GTAC	2 cut(s)	973, 1171
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	6 cut(s)	53, 568, 833, 1407, 1450, 1564
CviQI	GTAC	2 cut(s)	973, 1171
DdeI	CTNAG	4 cut(s)	429, 604, 1072, 1377
Eam1104I	CTCTTC	2 cut(s)	30, 1508
EarI	CTCTTC	2 cut(s)	30, 1508
Eco130I	CCWWGG	3 cut(s)	168, 567, 892
Eco24I	GRGCYC	1 cut(s)	1137
Eco32I	GATATC	2 cut(s)	133, 675
Eco47I	GGWCC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	262
EcoRI	GAATTC	2 cut(s)	163, 1482
EcoRII	CCWGG	1 cut(s)	1051
EcoRV	GATATC	2 cut(s)	133, 675
EcoT14I	CCWWGG	3 cut(s)	168, 567, 892
EcoT38I	GRGCYC	1 cut(s)	1137
ErhI	CCWWGG	3 cut(s)	168, 567, 892
Esp3I	CGTCTC	1 cut(s)	1118
FaeI	CATG	6 cut(s)	56, 571, 836, 1410, 1453, 1567
FalI	AAGNNNNNCTT	2 cut(s)	1505, 1537
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	6 cut(s)	52, 567, 832, 1406, 1449, 1563
FbaI	TGATCA	2 cut(s)	351, 933
FblI	GTMKAC	2 cut(s)	472, 1178
Fnu4HI	GCNGC	1 cut(s)	1455
FokI	GGATG	2 cut(s)	1333, 1385
FriOI	GRGCYC	1 cut(s)	1137
Fsp4HI	GCNGC	1 cut(s)	1455
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	1562
GluI	GCNGC	1 cut(s)	1455
GsuI	CTGGAG	1 cut(s)	530
HgaI	GACGC	2 cut(s)	165, 1100
HhaI	GCGC	1 cut(s)	1563
Hin1II	CATG	6 cut(s)	56, 571, 836, 1410, 1453, 1567
Hin6I	GCGC	1 cut(s)	1561
HinP1I	GCGC	1 cut(s)	1561
HincII	GTYRAC	2 cut(s)	422, 1327
HindII	GTYRAC	2 cut(s)	422, 1327
HinfI	GANTC	8 cut(s)	122, 137, 196, 282, 395, 418, 434, 1100
HphI	GGTGA	5 cut(s)	237, 590, 943, 1418, 1448
Hpy166II	GTNNAC	4 cut(s)	422, 473, 1179, 1327
Hpy188I	TCNGA	8 cut(s)	70, 210, 366, 417, 439, 1075, 1105, 1488
Hpy188III	TCNNGA	5 cut(s)	99, 262, 688, 1004, 1556
Hpy8I	GTNNAC	4 cut(s)	422, 473, 1179, 1327
Hpy99I	CGWCG	2 cut(s)	181, 1128
HpyAV	CCTTC	3 cut(s)	280, 865, 1277
HpyCH4III	ACNGT	3 cut(s)	252, 334, 1206
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	3 cut(s)	600, 1166, 1196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	4 cut(s)	429, 604, 1072, 1377
HpySE526I	ACGT	1 cut(s)	641
Hsp92II	CATG	6 cut(s)	56, 571, 836, 1410, 1453, 1567
HspAI	GCGC	1 cut(s)	1561
Ksp22I	TGATCA	2 cut(s)	351, 933
LmnI	GCTCC	3 cut(s)	173, 635, 1108
LpnPI	CCDG	9 cut(s)	185, 470, 494, 885, 1017, 1038, 1065, 1401, 1452
Lsp1109I	GCAGC	1 cut(s)	1441
LweI	GCATC	4 cut(s)	497, 609, 636, 1363
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	3 cut(s)	334, 1277, 1420
MboII	GAAGA	9 cut(s)	47, 668, 815, 850, 896, 978, 1223, 1316, 1525
MflI	RGATCY	3 cut(s)	232, 1183, 1463
MhlI	GDGCHC	3 cut(s)	269, 563, 1137
MlyI	GAGTC	3 cut(s)	146, 190, 427
MseI	TTAA	5 cut(s)	410, 498, 1146, 1310, 1568
MslI	CAYNNNNRTG	2 cut(s)	566, 926
MspA1I	CMGCKG	1 cut(s)	617
MspR9I	CCNGG	1 cut(s)	1053
MvaI	CCWGG	1 cut(s)	1053
MvnI	CGCG	1 cut(s)	1557
MwoI	GCNNNNNNNGC	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	567
NlaIII	CATG	6 cut(s)	56, 571, 836, 1410, 1453, 1567
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	334
NruI	TCGCGA	1 cut(s)	1557
NspI	RCATGY	2 cut(s)	836, 1567
PaeI	GCATGC	1 cut(s)	836
PaeR7I	CTCGAG	1 cut(s)	262
PfeI	GAWTC	5 cut(s)	122, 282, 395, 434, 1100
PkrI	GCNGC	1 cut(s)	1456
PleI	GAGTC	3 cut(s)	145, 190, 426
PpsI	GAGTC	3 cut(s)	145, 190, 426
Psp6I	CCWGG	1 cut(s)	1051
PspGI	CCWGG	1 cut(s)	1051
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	3 cut(s)	232, 1183, 1463
PvuII	CAGCTG	1 cut(s)	617
RruI	TCGCGA	1 cut(s)	1557
RsaI	GTAC	2 cut(s)	974, 1172
RsaNI	GTAC	2 cut(s)	973, 1171
RseI	CAYNNNNRTG	2 cut(s)	566, 926
SaqAI	TTAA	5 cut(s)	410, 498, 1146, 1310, 1568
SatI	GCNGC	1 cut(s)	1455
Sau96I	GGNCC	1 cut(s)	183
ScaI	AGTACT	1 cut(s)	974
SchI	GAGTC	3 cut(s)	146, 190, 427
ScrFI	CCNGG	1 cut(s)	1053
SduI	GDGCHC	3 cut(s)	269, 563, 1137
SfaNI	GCATC	4 cut(s)	497, 609, 636, 1363
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	2 cut(s)	566, 926
SmlI	CTYRAG	2 cut(s)	262, 1522
SmoI	CTYRAG	2 cut(s)	262, 1522
SphI	GCATGC	1 cut(s)	836
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	1051
StyI	CCWWGG	3 cut(s)	168, 567, 892
TaaI	ACNGT	3 cut(s)	252, 334, 1206
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	6 cut(s)	135, 263, 398, 964, 1126, 1156
TaqII	GACCGA	1 cut(s)	668
TatI	WGTACW	1 cut(s)	972
TfiI	GAWTC	5 cut(s)	122, 282, 395, 434, 1100
Tru1I	TTAA	5 cut(s)	410, 498, 1146, 1310, 1568
Tru9I	TTAA	5 cut(s)	410, 498, 1146, 1310, 1568
TscAI	CASTG	2 cut(s)	255, 879
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	1454
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	1353, 1416, 1526
TspGWI	ACGGA	2 cut(s)	175, 1112
TspRI	CASTG	2 cut(s)	255, 879
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	5 cut(s)	163, 448, 1038, 1340, 1482
XceI	RCATGY	2 cut(s)	836, 1567
XhoI	CTCGAG	1 cut(s)	262
XmiI	GTMKAC	2 cut(s)	472, 1178
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.