Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Forward (+)

33990520 .. 33993017

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATGAGGAGGCTAGCAGGCTTAGGACTATGTACAGAAATTCTCCTCGCTATTGCTTTTTCAGTTTGCATTCCGAAGTCTTGGGGGTTTTTGGAGATTTAGGCACTTCCCCCTTTTATGTTTTCTACAATACCTTTCCTCATGGAATTTCAGATCCTAAGGATGTGGATAGAGATCTGTCATTGATTATATATTGTCTTACTCTTATCCCACTCATCAAGTACGTATTTGTTGTTTGTCGAGCAAATGACAGTGGGCAAGATTCTAATCCTGAGATGGATTCTTGTGTGTGGAGGAATAGCTGCGCTTCTGGGCTCCCTGGATGGGAGATTCATGGAAGGCTGTTACAAGGCGGGTTTAGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

5.18

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	30 - 87	2.3e-13	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	40, 147
AfaI	GTAC	2 cut(s)	35, 224
AfiI	CCNNNNNNNGG	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
AlwI	GGATC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	2 cut(s)	40, 147
AspLEI	GCGC	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	14
AxyI	CCTNAGG	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	271, 318
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	321
BmtI	GCTAGC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	2 cut(s)	174, 267
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse21I	CCTNAGG	1 cut(s)	159
Bse8I	GATNNNNATC	2 cut(s)	174, 267
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	10, 169, 329
BseJI	GATNNNNATC	2 cut(s)	174, 267
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	23, 36
BseXI	GCAGC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	154, 175
BspACI	CCGC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	317
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	154, 175
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	16, 20
BstDEI	CTNAG	3 cut(s)	23, 159, 273
BstF5I	GGATG	3 cut(s)	10, 169, 329
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	157, 178
BstMBI	GATC	2 cut(s)	154, 175
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSNI	TACGTA	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	154, 175
BstYI	RGATCY	2 cut(s)	154, 175
Bsu36I	CCTNAGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	10, 169, 329
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	16, 20
CfoI	GCGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	34, 223
CviAII	CATG	2 cut(s)	143, 335
CviJI	RGCY	5 cut(s)	14, 22, 303, 316, 343
CviKI_1	RGCY	5 cut(s)	14, 22, 303, 316, 343
CviQI	GTAC	2 cut(s)	34, 223
DdeI	CTNAG	3 cut(s)	23, 159, 273
DpnI	GATC	2 cut(s)	156, 177
DpnII	GATC	2 cut(s)	154, 175
Eco105I	TACGTA	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	146, 338
FaiI	YATR	6 cut(s)	32, 120, 144, 191, 193, 336
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	142, 334
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	3 cut(s)	17, 176, 336
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	146, 338
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	3 cut(s)	263, 281, 331
Hpy188I	TCNGA	2 cut(s)	76, 154
Hpy188III	TCNNGA	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	70
HpyF3I	CTNAG	3 cut(s)	23, 159, 273
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	146, 338
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	154, 175
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	5 cut(s)	4, 285, 297, 306, 333
Lsp1109I	GCAGC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	2 cut(s)	156, 177
MboI	GATC	2 cut(s)	154, 175
MflI	RGATCY	2 cut(s)	154, 175
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	40, 147
MnlI	CCTC	4 cut(s)	4, 57, 150, 288
MspR9I	CCNGG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	154, 175
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	146, 338
NlaIV	GGNNCC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	263, 281, 331
PkrI	GCNGC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	154, 175
RsaI	GTAC	2 cut(s)	35, 224
RsaNI	GTAC	2 cut(s)	34, 223
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	154, 175
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	3 cut(s)	137, 228, 305
SnaBI	TACGTA	1 cut(s)	226
Sse9I	AATT	2 cut(s)	40, 147
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	241
TasI	AATT	2 cut(s)	40, 147
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	3 cut(s)	263, 281, 331
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	303
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	2 cut(s)	40, 147
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.