Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

23664330 .. 23666739

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGTCGTTTGGAGACCCAGATTTGTACGGGTTGGAAATCAAAAATCCTGTTGGAGGTAGAGGAGGCCAGAGGAGGAGGCGACGGGGTGGGGCGAGCGGAAGGGGAGGAAGTCGAGGAAGAAGCGGAGCCAGCAGTGGAGAAGTTTGGAGCTCGTTTATTTAAGTTCAATATTTTACAAGTTTACCGAAGGTGGATATCTTCCTCTCACCTTTGCCGCGAAATTGATGGTTATCATGTCAGTTTGGAGCTATGTGTATCGAAAAAGTACTACTATGAAATGGAACACAAAATTTCTCCTCAAAATCTAAAGGAAATTGTTGAAACCAATAACCTACATCGTGTGCGTGGCCTTGCCATGTTCTACTCTGAACTTGTTCATGGTATATCACCCATCTTCAGTCATTATGTAGCTAATGTGCCTGTAGTTCACTCAGTCCTTGTTTTTGTCTGCATCAAACAATTACCAATAAGCAAGGTTGTAGTGAGAGAACGCTTTCTTTTCCGCAGAGTAGAGCCTAAGGAGCTCAATGTGTTCCGATGTGTGTATCCCAACCAACAAGTAAAGGAGAGGTGTCTCAAAAAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

198

Amino Acids

22.93

Weight (kDa)

8.48

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans_C	PF22776	117 - 182	3.4e-10	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	1 cut(s)	219
AciI	CCGC	4 cut(s)	98, 125, 217, 505
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	28, 269
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	169, 323
AluBI	AGCT	4 cut(s)	152, 250, 413, 526
AluI	AGCT	4 cut(s)	152, 250, 413, 526
Alw21I	GWGCWC	2 cut(s)	154, 528
Alw26I	GTCTC	2 cut(s)	8, 581
AoxI	GGCC	2 cut(s)	66, 349
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	375, 495
AsuHPI	GGTGA	2 cut(s)	200, 381
AxyI	CCTNAGG	1 cut(s)	519
BanII	GRGCYC	2 cut(s)	154, 528
Bbv12I	GWGCWC	2 cut(s)	154, 528
BccI	CCATC	2 cut(s)	221, 401
BciVI	GTATCC	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	8, 581
BfmI	CTRYAG	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
BmcAI	AGTACT	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	447
BseRI	GAGGAG	4 cut(s)	77, 87, 90, 288
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	68, 351
BsiHKAI	GWGCWC	2 cut(s)	154, 528
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	8, 581
BsnI	GGCC	2 cut(s)	68, 351
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	154, 528
BspACI	CCGC	4 cut(s)	98, 125, 217, 505
BspANI	GGCC	2 cut(s)	68, 351
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	96, 132
BstDEI	CTNAG	2 cut(s)	433, 519
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	8, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 523
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	68, 351
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	96, 132
Csp6I	GTAC	2 cut(s)	27, 268
CviAII	CATG	3 cut(s)	236, 358, 380
CviJI	RGCY	8 cut(s)	68, 130, 152, 250, 351, 413, 517, 526
CviKI_1	RGCY	8 cut(s)	68, 130, 152, 250, 351, 413, 517, 526
CviQI	GTAC	2 cut(s)	27, 268
DdeI	CTNAG	2 cut(s)	433, 519
Ecl136II	GAGCTC	2 cut(s)	152, 526
Eco24I	GRGCYC	2 cut(s)	154, 528
Eco31I	GGTCTC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	198
Eco53kI	GAGCTC	2 cut(s)	152, 526
Eco57I	CTGAAG	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	519
EcoICRI	GAGCTC	2 cut(s)	152, 526
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	154, 528
FaeI	CATG	3 cut(s)	239, 361, 383
FaiI	YATR	7 cut(s)	237, 253, 276, 359, 381, 386, 408
FatI	CATG	3 cut(s)	235, 357, 379
Fnu4HI	GCNGC	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	154, 528
Fsp4HI	GCNGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	68, 351
Hin1II	CATG	3 cut(s)	239, 361, 383
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	200, 381
Hpy166II	GTNNAC	2 cut(s)	184, 430
Hpy188I	TCNGA	2 cut(s)	370, 539
Hpy8I	GTNNAC	2 cut(s)	184, 430
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	95, 183
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 523
HpyF3I	CTNAG	2 cut(s)	433, 519
Hsp92II	CATG	3 cut(s)	239, 361, 383
LmnI	GCTCC	4 cut(s)	127, 149, 247, 523
LpnPI	CCDG	5 cut(s)	32, 62, 82, 144, 435
LweI	GCATC	1 cut(s)	462
MbiI	CCGCTC	1 cut(s)	98
MboII	GAAGA	3 cut(s)	131, 192, 388
MhlI	GDGCHC	2 cut(s)	154, 528
MluCI	AATT	5 cut(s)	222, 291, 315, 461, 589
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	14, 33
MroXI	GAANNNNTTC	2 cut(s)	375, 495
MseI	TTAA	1 cut(s)	162
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	131, 523
NlaIII	CATG	3 cut(s)	239, 361, 383
NlaIV	GGNNCC	1 cut(s)	129
PdmI	GAANNNNTTC	2 cut(s)	375, 495
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	154, 528
PspN4I	GGNNCC	1 cut(s)	129
RsaI	GTAC	2 cut(s)	28, 269
RsaNI	GTAC	2 cut(s)	27, 268
SacI	GAGCTC	2 cut(s)	154, 528
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	154, 528
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	423
Sse9I	AATT	5 cut(s)	222, 291, 315, 461, 589
SsiI	CCGC	4 cut(s)	98, 125, 217, 505
SspI	AATATT	1 cut(s)	172
SstI	GAGCTC	2 cut(s)	154, 528
TaqI	TCGA	2 cut(s)	114, 260
TasI	AATT	5 cut(s)	222, 291, 315, 461, 589
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	291, 368
TspRI	CASTG	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	291
XmnI	GAANNNNTTC	2 cut(s)	375, 495
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.