Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Forward (+)

14696404 .. 14699210

Gene Structure 2807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTACTGATGAAGGCACTGATAACAAATTAGGAAGGGTGTGGGTTTTGGATCAGCAGTTTGATCAACCCATGGATGAAGAAGCTAAGAAGCTTAGAAATCCATATAATGAAAAGAAATTTTCAACATTAATGGTTATGCAGCTTGCATTTCAAAGCCTCGGTGTGGTCTATGGTGATTTAGGCACATCTCCTCTCTATGTGTTCTACAATACATTTCCTAATGGAATTAGTGACCCGGAGGATTTAGTTGGAGCTTTATCTGTCATCATATATTCCCTCACTCTAATTCCCCTCCTGAAGTATGTTTTTATTGTCTGTAGAGCAAATGACAACGGTCAAGGTGGAACATTTGCTCTTTATTCATTACTCTGTCGATATGCAAACATAAAGGCTATTCCGAACCAAGACCATACAGATGAGACTGTAACAACATATAGTCATTCCACATTTGGGGAGCAATCATTTGCTGCACGAACCAAGACATGGTTGGAGGGACAAGCAATATTGAAGAACACTCTTCTAATTCTTGTTCTAGTTGGTTCCAGCATGGTGATTGGGGATGGGATTCTGACTCCAGCCATATCAGTTCTGTCAGCAGTTGGTGGGATCAATGTGCGCCGCTCTGAGATCAGTAATGATGTAGTTGTGTTAGTTGCTGTTGTTATGCTGGTACTACTGTTTACAGTGCAACACCATGGTACAGACAAAGTTGTTTGGTTGTTTGCACCAATAGTGCTCCTTTGGTTTCTCTTAATAGGAGGGATTGGCTTGTTCAACATTTGGAAATATGATAGTACCGTTCTAAAAGCTTTTTCACCTATGTATGTATATCGATTTTTTAAGAGGGGAGGAAAAGACGGTTGGACATCTCTAGGAGGTATTATGCTTACCATAACAGGAACAGAAGCACTCTTTGCTGACCTCTCCCATTTCCCAGTCCCGTCAATACAGATAGCTTTCACATCAGTTGTATTTCCTTGCCTTCTTTTAGCATATTCTGGTCAGGCTGCCTATCTCATGAAGAATTCTGATAATGTGTTAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

350

Amino Acids

38.58

Weight (kDa)

5.73

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	49 - 349	1.6e-93	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	486
AccBSI	CCGCTC	1 cut(s)	624
AciI	CCGC	1 cut(s)	622
AclWI	GGATC	2 cut(s)	60, 617
AcsI	RAATTY	2 cut(s)	119, 1027
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	675, 703, 799
AfiI	CCNNNNNNNGG	3 cut(s)	166, 453, 486
AgsI	TTSAA	4 cut(s)	126, 155, 511, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	847, 879
AluBI	AGCT	6 cut(s)	86, 94, 145, 257, 812, 959
AluI	AGCT	6 cut(s)	86, 94, 145, 257, 812, 959
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	60, 617
ApeKI	GCWGC	3 cut(s)	142, 470, 1010
ApoI	RAATTY	2 cut(s)	119, 1027
AseI	ATTAAT	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	621
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	188, 565, 810
BaeI	ACNNNNGTAYC	2 cut(s)	665, 698
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	154, 457, 997
BccI	CCATC	1 cut(s)	557
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	536, 875
BfmI	CTRYAG	1 cut(s)	319
BisI	GCNGC	4 cut(s)	143, 471, 622, 1011
BlsI	GCNGC	4 cut(s)	144, 472, 623, 1012
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	932
BmuI	ACTGGG	1 cut(s)	932
BoxI	GACNNNNGTC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	835
BsaJI	CCNNGG	3 cut(s)	72, 160, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 453, 486
Bse1I	ACTGG	1 cut(s)	938
BseCI	ATCGAT	1 cut(s)	835
BseDI	CCNNGG	3 cut(s)	72, 160, 697
BseGI	GGATG	2 cut(s)	82, 568
BseLI	CCNNNNNNNGG	3 cut(s)	166, 453, 486
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	938
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	154, 457, 997
BsgI	GTGCAG	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	510, 926
BslI	CCNNNNNNNGG	3 cut(s)	166, 453, 486
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	510, 926
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	4 cut(s)	52, 64, 609, 630
Bsp19I	CCATGG	2 cut(s)	72, 697
BspACI	CCGC	1 cut(s)	622
BspCNI	CTCAG	1 cut(s)	619
BspDI	ATCGAT	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	1020
BspLI	GGNNCC	1 cut(s)	544
BspPI	GGATC	2 cut(s)	60, 617
BsrBI	CCGCTC	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	938
BssECI	CCNNGG	3 cut(s)	72, 160, 697
BssMI	GATC	4 cut(s)	52, 64, 609, 630
BssT1I	CCWWGG	2 cut(s)	72, 697
Bst4CI	ACNGT	6 cut(s)	338, 427, 681, 688, 802, 863
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	87, 95, 627
BstDSI	CCRYGG	2 cut(s)	72, 697
BstF5I	GGATG	2 cut(s)	82, 568
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	4 cut(s)	55, 67, 612, 633
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	52, 64, 609, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	154, 457, 997
Bsu15I	ATCGAT	1 cut(s)	835
BsuTUI	ATCGAT	1 cut(s)	835
BtgI	CCRYGG	2 cut(s)	72, 697
BtsCI	GGATG	2 cut(s)	82, 568
BtsIMutI	CAGTG	2 cut(s)	18, 693
Cac8I	GCNNGC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	621
ClaI	ATCGAT	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	674, 702, 798
CviAII	CATG	5 cut(s)	73, 486, 550, 698, 1021
CviQI	GTAC	3 cut(s)	674, 702, 798
DdeI	CTNAG	3 cut(s)	87, 95, 627
DpnI	GATC	4 cut(s)	54, 66, 611, 632
DpnII	GATC	4 cut(s)	52, 64, 609, 630
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	72, 697
Eco57I	CTGAAG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	1027
EcoT14I	CCWWGG	2 cut(s)	72, 697
ErhI	CCWWGG	2 cut(s)	72, 697
FaeI	CATG	5 cut(s)	76, 489, 553, 701, 1024
FaqI	GGGAC	2 cut(s)	510, 926
FatI	CATG	5 cut(s)	72, 485, 549, 697, 1020
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	143, 471, 622, 1011
FokI	GGATG	2 cut(s)	89, 575
Fsp4HI	GCNGC	4 cut(s)	143, 471, 622, 1011
FspBI	CTAG	2 cut(s)	536, 875
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	4 cut(s)	143, 471, 622, 1011
GsuI	CTGGAG	1 cut(s)	561
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	5 cut(s)	76, 489, 553, 701, 1024
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	92, 810
HinfI	GANTC	2 cut(s)	568, 574
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	3 cut(s)	188, 565, 810
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188I	TCNGA	4 cut(s)	402, 573, 628, 1033
Hpy188III	TCNNGA	2 cut(s)	298, 1021
Hpy8I	GTNNAC	1 cut(s)	684
HpyAV	CCTTC	3 cut(s)	8, 30, 995
HpyCH4III	ACNGT	6 cut(s)	338, 427, 681, 688, 802, 863
HpyCH4V	TGCA	6 cut(s)	142, 149, 383, 473, 691, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	3 cut(s)	87, 95, 627
Hsp92II	CATG	5 cut(s)	76, 489, 553, 701, 1024
HspAI	GCGC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	52, 64, 609, 630
LmnI	GCTCC	3 cut(s)	254, 457, 744
LpnPI	CCDG	9 cut(s)	252, 311, 559, 591, 656, 885, 951, 987, 992
Lsp1109I	GCAGC	3 cut(s)	154, 457, 997
MaeI	CTAG	2 cut(s)	536, 875
MaeIII	GTNAC	2 cut(s)	233, 427
MalI	GATC	4 cut(s)	54, 66, 611, 632
MbiI	CCGCTC	1 cut(s)	624
MboI	GATC	4 cut(s)	52, 64, 609, 630
MboII	GAAGA	4 cut(s)	92, 512, 523, 1036
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	6 cut(s)	29, 119, 228, 288, 525, 1027
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	3 cut(s)	232, 471, 845
MseI	TTAA	5 cut(s)	131, 755, 843, 1043, 1051
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	917
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	2 cut(s)	72, 697
NdeII	GATC	4 cut(s)	52, 64, 609, 630
NlaIII	CATG	5 cut(s)	76, 489, 553, 701, 1024
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	233
PagI	TCATGA	1 cut(s)	1020
PfeI	GAWTC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	486
PkrI	GCNGC	4 cut(s)	144, 472, 623, 1012
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	336
PshBI	ATTAAT	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	544
RsaI	GTAC	3 cut(s)	675, 703, 799
RsaNI	GTAC	3 cut(s)	674, 702, 798
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	131, 755, 843, 1043, 1051
SatI	GCNGC	4 cut(s)	143, 471, 622, 1011
Sau3AI	GATC	4 cut(s)	52, 64, 609, 630
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	741
SfcI	CTRYAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	6 cut(s)	29, 119, 228, 288, 525, 1027
SsiI	CCGC	1 cut(s)	622
SspI	AATATT	1 cut(s)	507
SspMI	CTAG	2 cut(s)	536, 875
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	72, 697
TaaI	ACNGT	6 cut(s)	338, 427, 681, 688, 802, 863
TaqI	TCGA	2 cut(s)	376, 835
TasI	AATT	6 cut(s)	29, 119, 228, 288, 525, 1027
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	5 cut(s)	131, 755, 843, 1043, 1051
Tru9I	TTAA	5 cut(s)	131, 755, 843, 1043, 1051
TscAI	CASTG	2 cut(s)	25, 693
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	142, 470, 1010
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	27, 93, 126, 354, 1037
TspRI	CASTG	2 cut(s)	25, 693
Van91I	CCANNNNNTGG	1 cut(s)	486
VspI	ATTAAT	1 cut(s)	131
XapI	RAATTY	2 cut(s)	119, 1027
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	2 cut(s)	536, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.