Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Forward (+)

28871156 .. 28882558

Gene Structure 11403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG283500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTTAATATTAGCCCCCTTTTTTCTGGAACCATCAAGGCCGTCGGGAAACATGTGTCGAGATGGAAAGTGGGCGATCAGAAATTTTCAACATTAATGGTTATGCAGCTTGCATTTCAAAGCCTCGGTGTGGTCTATGGTGATTTAGGCACATCTCCTCTCTATGTGTTCTACAATACATTTCCTAATGGAATTAGTGACCCGGAGGATTTAGTTGGAGCTTTATCTGTCATCATATATTCCCTCACTCTAATTCCCCTCCTGAAGTATGTATTTATTGTCTGTAGAGCAAATGACAACGGTCAAGATGTAGTTGTGTTTGTTGCTGTTGTTATACTGGTACTACTGTTTACAGTGCAACACCATGGTACAGACAAAGTTGTTTGGTTGTTTGCACCAATAGTGCTCCTTTGGTTTCTCTTAATAGGAGGGATTGGCTTGTTCAACATTTGGAAATATGATAGTACCGTTCTAAAAGCTTTTTCACCTATGTATGTATATCGATTTTTTAAGAGGGGAGGAAAAGACGGTTGGACATCTCTAGGAGGTATTATGCTTACCATAACAGGAACAGAAGTACTCTTTGCTGACCTCTCCCATTTCCCAGTCCTGTCAATACAGATAGCTTTCACATCAGTTGTATTTCCTTGGCTTCTTTTAGCATATTCTGGTCAGGCTGCTTACGTTATAAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

232

Amino Acids

25.73

Weight (kDa)

8.59

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	37 - 102	3.3e-20	K+ potassium transporter integral membrane domain
K_trans	PF02705	103 - 231	6.4e-42	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	4 cut(s)	342, 370, 466, 579
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	90, 119, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	4 cut(s)	109, 221, 479, 626
AluI	AGCT	4 cut(s)	109, 221, 479, 626
Alw21I	GWGCWC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	106, 677
ApoI	RAATTY	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	152, 477
BaeI	ACNNNNGTAYC	2 cut(s)	332, 365
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	118, 664
BccI	CCATC	2 cut(s)	41, 57
BceAI	ACGGC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	2 cut(s)	107, 678
BlsI	GCNGC	2 cut(s)	108, 679
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	599
BmuI	ACTGGG	1 cut(s)	599
BoxI	GACNNNNGTC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	124, 364, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	342, 605
BseCI	ATCGAT	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	124, 364, 647
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	342, 605
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	118, 664
BshFI	GGCC	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	130
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	364
BspANI	GGCC	1 cut(s)	41
BspDI	ATCGAT	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	342, 605
BssECI	CCNNGG	3 cut(s)	124, 364, 647
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	364, 647
Bst4CI	ACNGT	5 cut(s)	302, 348, 355, 469, 530
BstC8I	GCNNGC	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	364
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	118, 664
Bsu15I	ATCGAT	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	41
BsuTUI	ATCGAT	1 cut(s)	502
BtgI	CCRYGG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	502
Csp6I	GTAC	4 cut(s)	341, 369, 465, 578
CviAII	CATG	2 cut(s)	53, 365
CviQI	GTAC	4 cut(s)	341, 369, 465, 578
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	364, 647
Eco57I	CTGAAG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	364, 647
ErhI	CCWWGG	2 cut(s)	364, 647
FaeI	CATG	2 cut(s)	56, 368
FatI	CATG	2 cut(s)	52, 364
Fnu4HI	GCNGC	2 cut(s)	107, 678
Fsp4HI	GCNGC	2 cut(s)	107, 678
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	2 cut(s)	107, 678
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	2 cut(s)	56, 368
HindIII	AAGCTT	1 cut(s)	477
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	152, 477
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	5 cut(s)	27, 46, 60, 262, 305
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	5 cut(s)	302, 348, 355, 469, 530
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	4 cut(s)	106, 113, 358, 395
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	2 cut(s)	56, 368
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	218, 411
LpnPI	CCDG	9 cut(s)	12, 216, 275, 323, 552, 618, 623, 654, 659
Lsp1109I	GCAGC	2 cut(s)	118, 664
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	3 cut(s)	83, 192, 252
MmeI	TCCRAC	2 cut(s)	196, 512
MseI	TTAA	4 cut(s)	6, 95, 422, 510
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	56, 368
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	108, 679
PscI	ACATGT	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	689
PspN4I	GGNNCC	1 cut(s)	31
RsaI	GTAC	4 cut(s)	342, 370, 466, 579
RsaNI	GTAC	4 cut(s)	341, 369, 465, 578
SaqAI	TTAA	4 cut(s)	6, 95, 422, 510
SatI	GCNGC	2 cut(s)	107, 678
Sau3AI	GATC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	8 cut(s)	111, 223, 481, 490, 550, 594, 628, 687
SfcI	CTRYAG	1 cut(s)	283
Sse9I	AATT	3 cut(s)	83, 192, 252
SspI	AATATT	2 cut(s)	10, 694
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	364, 647
TaaI	ACNGT	5 cut(s)	302, 348, 355, 469, 530
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	2 cut(s)	59, 502
TasI	AATT	3 cut(s)	83, 192, 252
TatI	WGTACW	1 cut(s)	577
Tru1I	TTAA	4 cut(s)	6, 95, 422, 510
Tru9I	TTAA	4 cut(s)	6, 95, 422, 510
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	106, 677
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	1 cut(s)	360
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.