Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

3322536 .. 3330631

Gene Structure 8096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACGAACTTATTAGCCCCCTTTTTTCTGGAACCATCAAGGCCGTCGGGAAACACGTGTCGAGATGGAAAGTGGGCGATCAGAAATTATATATATGAAATTGTGCAAATTCCAGAGGCTATTAATCCTTTGGATGGAGGCAGATCTTTGTTCTTGATTGTGTCTCTTTCATACTATATGAAATTTTCAACATTAATGGTTATGCAGCTTGCATTTCAAAGCCTCGGTGTGGTCTATGGTGATTTAGGCACATCTCCTCTCTATGTGTTCTACAATACATTTCCTAATGGAATTAGTGACCCGGAGGATTTAGTTGGAGCTTTATCTGTCATCATATATTCCCTCACTCTAATTCCCCTCTTGAAGTATGTATTTATTGTCTGTAGAGCAAATGACAACGGTCAAGATGTAGTTGTGTTTGTTGCTGTTGTTATGCTGCTGGCTTTAAAAATCAAAACCAAATTGGTAACGCCTCTGCAAACTAGGCAATCAAGAAGTAGCACGTTCAATAGTATCAGCAACATACCTTACTCCACCGCAGACCTGTCAATTCAGTCGAATGACTCAATCGTCCTGGCTGATATATATCAGAGATGGTATGTGTGCGTGAGTGATAGAGAAAGAGAATTCAACCTTTGTCGTCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

216

Amino Acids

24.35

Weight (kDa)

5.83

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	70 - 138	7.3e-21	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AciI	CCGC	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	108, 182, 626
AcvI	CACGTG	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	134, 229
AflIII	ACRYGT	2 cut(s)	54, 56
AgsI	TTSAA	5 cut(s)	189, 218, 364, 508, 631
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	2 cut(s)	208, 320
AluI	AGCT	2 cut(s)	208, 320
Alw26I	GTCTC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	205, 436
ApoI	RAATTY	3 cut(s)	108, 182, 626
AseI	ATTAAT	2 cut(s)	123, 194
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	251
BbrPI	CACGTG	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	217, 423
BccI	CCATC	4 cut(s)	43, 59, 128, 588
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	382
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	2 cut(s)	206, 437
BlsI	GCNGC	2 cut(s)	207, 438
Bme1390I	CCNGG	2 cut(s)	302, 575
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	302, 575
BoxI	GACNNNNGTC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 229
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	134, 229
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	217, 423
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	134, 229
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	78, 143
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	78, 143
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	210, 441
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	81, 146
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	78, 143
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	575
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	300, 573
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	217, 423
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	210, 441
CciI	TCATGA	1 cut(s)	643
CviAII	CATG	1 cut(s)	644
CviJI	RGCY	8 cut(s)	17, 43, 119, 208, 222, 320, 443, 578
CviKI_1	RGCY	8 cut(s)	17, 43, 119, 208, 222, 320, 443, 578
DpnI	GATC	2 cut(s)	80, 145
DpnII	GATC	2 cut(s)	78, 143
DraI	TTTAAA	1 cut(s)	447
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
Eco72I	CACGTG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	573
FaeI	CATG	1 cut(s)	647
FatI	CATG	1 cut(s)	643
Fnu4HI	GCNGC	2 cut(s)	206, 437
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	206, 437
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	2 cut(s)	206, 437
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	1 cut(s)	647
HinfI	GANTC	1 cut(s)	563
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	83, 591
Hpy188III	TCNNGA	9 cut(s)	29, 48, 62, 113, 154, 361, 404, 492, 644
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	2 cut(s)	56, 503
HpyCH4V	TGCA	4 cut(s)	106, 205, 212, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpySE526I	ACGT	2 cut(s)	56, 503
Hsp92II	CATG	1 cut(s)	647
Kzo9I	GATC	2 cut(s)	78, 143
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	7 cut(s)	14, 126, 315, 425, 557, 560, 587
Lsp1109I	GCAGC	2 cut(s)	217, 423
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	2 cut(s)	56, 503
MaeIII	GTNAC	2 cut(s)	296, 466
MalI	GATC	2 cut(s)	80, 145
MboI	GATC	2 cut(s)	78, 143
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	9 cut(s)	85, 99, 108, 182, 291, 351, 461, 549, 626
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	109, 131, 233, 267, 298, 353, 368, 483
MseI	TTAA	4 cut(s)	123, 194, 446, 649
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	302, 575
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	484
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	2 cut(s)	78, 143
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	207, 438
PleI	GAGTC	1 cut(s)	557
PmaCI	CACGTG	1 cut(s)	57
PmlI	CACGTG	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	399
PshBI	ATTAAT	2 cut(s)	123, 194
Psp6I	CCWGG	1 cut(s)	573
PspCI	CACGTG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	123, 194, 446, 649
SatI	GCNGC	2 cut(s)	206, 437
Sau3AI	GATC	2 cut(s)	78, 143
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	2 cut(s)	302, 575
SetI	ASST	7 cut(s)	59, 210, 322, 506, 529, 546, 636
SfcI	CTRYAG	1 cut(s)	382
Sse9I	AATT	9 cut(s)	85, 99, 108, 182, 291, 351, 461, 549, 626
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	300, 573
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	2 cut(s)	59, 506
TaqI	TCGA	2 cut(s)	61, 557
TasI	AATT	9 cut(s)	85, 99, 108, 182, 291, 351, 461, 549, 626
Tru1I	TTAA	4 cut(s)	123, 194, 446, 649
Tru9I	TTAA	4 cut(s)	123, 194, 446, 649
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	205, 436
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	111, 159, 194
VspI	ATTAAT	2 cut(s)	123, 194
XapI	RAATTY	3 cut(s)	108, 182, 626
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.