Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

59275079 .. 59275958

Gene Structure 880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG408800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGCTTCTGTATTTAAGTTCAGTCCTTTACAAGTTTGACCAAGGGGGATATCTTCCAGTCGCCTTTGCCACTCTAATGATGGCTATAATGTTTGTTTGGAATGATGTTTATCGAAGAAAGTACTACTATGAGGTTGAACAGAAAATATCTCCTCAAAAGTTCAAGCAGATTGCTGATGATAGAAAATTTTGTCATATCCCTGGCCTCGCCATATTCTACTCGGAACTTGTTCATGGCATCCCACCCATTTTCAATCACTACTTAGCCAACGTGCCTGCATTGCACTCAGTCCTTGTTTTTGTCTCCATCAGACATTTACCCATAAGCAAGGTTCCGATGGAAGAGCGTCTCCTCTTCCGCCGAGTAGAGCCCAAGGAGCTTAATGTATTTCGATGTGTTGCGAGGTACGGGTATACAGATCTCTACAATGTGCAAGAACCCTTTGAAGAATTGTTGGTAAAAAAGTTGAAAGAGTTCTTGAAAGATGGTTGTTTCATACCCCAACAAACAAGTAATAATGGAGAGGCGTTTGAAAAGCAAGAAGAATTAAATGATGGATTGGTTGACAACGAGAATGAATTTGTTGACATACAACAAGAAGAACTTATGGAGGCTGAGGTTCAACTTGAAGCAATAGATAAAGCATGGAGTTCAGGGGTTATTCACCTCATTGGTGAAAATGAAGTCATAGCTGCCAAAGGATCTGGTATAGCCAAAAGAATTTTGATTGATTATGCTTACAATTTTTTGAAGAGCAATTTGAGGCAGAGAGGCGAATTGTTTGAAATTCCTCGCAAGCGCATGCTAAAAGTGGGTATGACCTATGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

278

Amino Acids

32.44

Weight (kDa)

5.65

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	1 - 55	4e-07	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	68 - 278	2e-29	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	1 cut(s)	712
AcsI	RAATTY	4 cut(s)	188, 581, 723, 789
AfaI	GTAC	2 cut(s)	125, 410
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	7, 382, 695
AluI	AGCT	3 cut(s)	7, 382, 695
Alw26I	GTCTC	2 cut(s)	310, 356
AlwI	GGATC	1 cut(s)	712
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	4 cut(s)	188, 581, 723, 789
Asp700I	GAANNNNTTC	2 cut(s)	231, 476
AspLEI	GCGC	1 cut(s)	804
AsuHPI	GGTGA	2 cut(s)	659, 689
BanII	GRGCYC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	5 cut(s)	76, 317, 334, 482, 551
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	310, 356
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	43, 202, 375
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	281
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	43, 202, 375
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	303, 609
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	144, 344
BseXI	GCAGC	1 cut(s)	682
BshFI	GGCC	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	310, 356
BsmBI	CGTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	421, 704
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	302, 610
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	712
BspQI	GCTCTTC	2 cut(s)	339, 749
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	43, 202, 375
BssMI	GATC	2 cut(s)	421, 704
BssNAI	GTATAC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	43, 375
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	3 cut(s)	339, 362, 749
BstC8I	GCNNGC	3 cut(s)	279, 800, 806
BstDEI	CTNAG	3 cut(s)	265, 289, 618
BstF5I	GGATG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	2 cut(s)	424, 707
BstMAI	GTCTC	2 cut(s)	310, 356
BstMBI	GATC	2 cut(s)	421, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 379
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	2 cut(s)	421, 704
BstYI	RGATCY	2 cut(s)	421, 704
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	279, 800, 806
CfoI	GCGC	1 cut(s)	804
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	124, 409
CviAII	CATG	3 cut(s)	236, 648, 805
CviJI	RGCY	9 cut(s)	7, 86, 207, 269, 373, 382, 617, 695, 716
CviKI_1	RGCY	9 cut(s)	7, 86, 207, 269, 373, 382, 617, 695, 716
CviQI	GTAC	2 cut(s)	124, 409
DdeI	CTNAG	3 cut(s)	265, 289, 618
DpnI	GATC	2 cut(s)	423, 706
DpnII	GATC	2 cut(s)	421, 704
Eam1104I	CTCTTC	3 cut(s)	339, 362, 749
EarI	CTCTTC	3 cut(s)	339, 362, 749
EciI	GGCGGA	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	43, 375
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	43, 375
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	2 cut(s)	43, 375
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	3 cut(s)	239, 651, 808
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FatI	CATG	3 cut(s)	235, 647, 804
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	696
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	3 cut(s)	239, 651, 808
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	2 cut(s)	568, 589
HindII	GTYRAC	2 cut(s)	568, 589
HphI	GGTGA	2 cut(s)	659, 689
Hpy166II	GTNNAC	3 cut(s)	417, 568, 589
Hpy188I	TCNGA	3 cut(s)	226, 314, 339
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	3 cut(s)	417, 568, 589
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	281, 286, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 379
HpyF3I	CTNAG	3 cut(s)	265, 289, 618
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	239, 651, 808
HspAI	GCGC	1 cut(s)	802
Kzo9I	GATC	2 cut(s)	421, 704
LguI	GCTCTTC	2 cut(s)	339, 749
LmnI	GCTCC	2 cut(s)	4, 379
LpnPI	CCDG	6 cut(s)	72, 189, 216, 291, 642, 693
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	1 cut(s)	273
MalI	GATC	2 cut(s)	423, 706
MboI	GATC	2 cut(s)	421, 704
MboII	GAAGA	8 cut(s)	47, 129, 349, 356, 461, 557, 614, 766
MflI	RGATCY	2 cut(s)	421, 704
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	9 cut(s)	188, 452, 548, 581, 723, 745, 760, 779, 789
MroXI	GAANNNNTTC	2 cut(s)	231, 476
MseI	TTAA	3 cut(s)	17, 384, 551
MslI	CAYNNNNRTG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	283, 379
NdeII	GATC	2 cut(s)	421, 704
NlaIII	CATG	3 cut(s)	239, 651, 808
NlaIV	GGNNCC	1 cut(s)	336
NmeAIII	GCCGAG	1 cut(s)	389
NspI	RCATGY	1 cut(s)	808
PaeI	GCATGC	1 cut(s)	808
PciSI	GCTCTTC	2 cut(s)	339, 749
PdmI	GAANNNNTTC	2 cut(s)	231, 476
PkrI	GCNGC	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	421, 704
RsaI	GTAC	2 cut(s)	125, 410
RsaNI	GTAC	2 cut(s)	124, 409
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	2 cut(s)	339, 749
SaqAI	TTAA	3 cut(s)	17, 384, 551
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	2 cut(s)	421, 704
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	808
Sse9I	AATT	9 cut(s)	188, 452, 548, 581, 723, 745, 760, 779, 789
SsiI	CCGC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	43, 375
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	115, 394
TasI	AATT	9 cut(s)	188, 452, 548, 581, 723, 745, 760, 779, 789
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	17, 384, 551
Tru9I	TTAA	3 cut(s)	17, 384, 551
TseI	GCWGC	1 cut(s)	695
TspDTI	ATGAA	4 cut(s)	224, 487, 594, 699
XapI	RAATTY	4 cut(s)	188, 581, 723, 789
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	416
XmnI	GAANNNNTTC	2 cut(s)	231, 476
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.