Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021490.1

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3090

Gene Structure 3090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021490.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

atggctgcacaggaagaccctgacaaaaaaagtggtgtctgggttttggaccagcaacttgatcagcccattgatgtggaggccaagaagatcaaagaaacgaacattcacaagaactgttcatcaatgatggttctgcaacttgcatttcaaagcctcggtgtggtctatggagacttgggcacatctcctttatatgtattctataatatatttcctgatggggttgatgacaaagaggatgttgttggagctttatctgtgattatatggtctcttactttcgttccacttctgaagtatgtctttattgtctgtagagcaaatgacaatggtcaaggcggaacatttgctctttattcattactttgtcgacatgcaaaaataaagagtgttcctaaccaagacgtaactgatgaggaggtaacaacatttagtcgttctacatttggtgagaaatcatttgcagcaagaatcaagagagggttggagaaacatgaattcttgcagaacatgcttcttatccttgtgctgatcggctcttgcatggtgattggggatgggattttgactccggccatatcagttctttcagctgttggtgggatgaatgtgcatcacaaggggattagtaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

212

Amino Acids

23.28

Weight (kDa)

5.94

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	2 cut(s)	254, 596
AluI	AGCT	2 cut(s)	254, 596
Alw26I	GTCTC	2 cut(s)	168, 279
AoxI	GGCC	2 cut(s)	81, 576
ApeKI	GCWGC	2 cut(s)	5, 467
ApoI	RAATTY	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	464, 562
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	124, 215, 554
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	168, 279
BfmI	CTRYAG	1 cut(s)	316
BisI	GCNGC	2 cut(s)	6, 468
BlsI	GCNGC	2 cut(s)	7, 469
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	3 cut(s)	247, 565, 612
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	479
BshFI	GGCC	2 cut(s)	83, 578
BsiSI	CCGG	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	2 cut(s)	168, 279
BsnI	GGCC	2 cut(s)	83, 578
Bso31I	GGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	61, 90, 534
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	2 cut(s)	83, 578
BspTNI	GGTCTC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	61, 90, 534
Bst4CI	ACNGT	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstF5I	GGATG	3 cut(s)	247, 565, 612
BstKTI	GATC	3 cut(s)	64, 93, 537
BstMAI	GTCTC	2 cut(s)	168, 279
BstMBI	GATC	3 cut(s)	61, 90, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNSI	RCATGY	2 cut(s)	380, 517
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	83, 578
BtsCI	GGATG	3 cut(s)	247, 565, 612
Cfr13I	GGNCC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	4 cut(s)	377, 497, 514, 547
CviJI	RGCY	8 cut(s)	5, 67, 83, 156, 254, 540, 578, 596
CviKI_1	RGCY	8 cut(s)	5, 67, 83, 156, 254, 540, 578, 596
DpnI	GATC	3 cut(s)	63, 92, 536
DpnII	GATC	3 cut(s)	61, 90, 534
EaeI	YGGCCR	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	500
FaeI	CATG	4 cut(s)	380, 500, 517, 550
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	4 cut(s)	376, 496, 513, 546
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	6, 468
FokI	GGATG	3 cut(s)	254, 572, 619
Fsp4HI	GCNGC	2 cut(s)	6, 468
GluI	GCNGC	2 cut(s)	6, 468
HaeIII	GGCC	2 cut(s)	83, 578
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	4 cut(s)	380, 500, 517, 550
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	474, 571
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	2 cut(s)	464, 562
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	218, 478
Hpy8I	GTNNAC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	8 cut(s)	8, 139, 146, 380, 467, 508, 546, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	380, 500, 517, 550
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 90, 534
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	5 cut(s)	25, 33, 65, 231, 588
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	625
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	409, 424
MalI	GATC	3 cut(s)	63, 92, 536
MboI	GATC	3 cut(s)	61, 90, 534
MboII	GAAGA	2 cut(s)	26, 100
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	2 cut(s)	229, 468
MnlI	CCTC	6 cut(s)	73, 167, 232, 412, 415, 476
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	514
NdeII	GATC	3 cut(s)	61, 90, 534
NlaIII	CATG	4 cut(s)	380, 500, 517, 550
NspI	RCATGY	2 cut(s)	380, 517
PfeI	GAWTC	1 cut(s)	474
PkrI	GCNGC	2 cut(s)	7, 469
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	372
SatI	GCNGC	2 cut(s)	6, 468
Sau3AI	GATC	3 cut(s)	61, 90, 534
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	256, 411, 426, 598
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	373
TasI	AATT	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	474
TseI	GCWGC	2 cut(s)	5, 467
TspDTI	ATGAA	4 cut(s)	111, 351, 513, 623
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	2 cut(s)	380, 517
XmiI	GTMKAC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.