Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314359.1

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Forward (+)

118 .. 829

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggctactaatgaagaaactggtggcaaaggtggagtgtgggttttggatcagcagcttgatcagcctatggatgaggaggccaagaggcttagaaatatgtaccaagaaaagaaaatttcgacagcaattcttctgcagcttgcatttcaaagccttggtgtggtctatggagatttaggcacatctcctttgtatgtcttctacaatacatttcccaggggagttgacgatcccgaggatttaattggagctttgtctgtcattatatattccctcactcttattccacttgtgaagtatgtttttatcgtctgtagggcaaatgacaatggtcaaggtaatcaatctcaaacttattatgttactgtattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

125

Amino Acids

13.98

Weight (kDa)

4.5

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	57, 227
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	58, 142, 254
AluI	AGCT	3 cut(s)	58, 142, 254
AlwI	GGATC	2 cut(s)	57, 227
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	55, 139
ApoI	RAATTY	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	67, 151
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	1 cut(s)	61
BfaI	CTAG	1 cut(s)	376
BfmI	CTRYAG	2 cut(s)	137, 316
BisI	GCNGC	2 cut(s)	56, 140
BlsI	GCNGC	2 cut(s)	57, 141
Bme1390I	CCNGG	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	193
BsaJI	CCNNGG	4 cut(s)	157, 218, 219, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	4 cut(s)	157, 218, 219, 237
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	67, 151
BshFI	GGCC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	163
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	49, 61, 232
BspANI	GGCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	2 cut(s)	57, 227
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	157, 218, 219, 237
BssMI	GATC	3 cut(s)	49, 61, 232
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	3 cut(s)	52, 64, 235
BstMBI	GATC	3 cut(s)	49, 61, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	137, 316
BstV1I	GCAGC	2 cut(s)	67, 151
BstV2I	GAAGAC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	8 cut(s)	5, 58, 67, 83, 91, 142, 156, 254
CviKI_1	RGCY	8 cut(s)	5, 58, 67, 83, 91, 142, 156, 254
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	3 cut(s)	51, 63, 234
DpnII	GATC	3 cut(s)	49, 61, 232
Eco130I	CCWWGG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaiI	YATR	8 cut(s)	71, 101, 171, 198, 269, 271, 303, 363
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	56, 140
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	56, 140
FspBI	CTAG	1 cut(s)	376
GluI	GCNGC	2 cut(s)	56, 140
HaeIII	GGCC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	139, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	49, 61, 232
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	3 cut(s)	6, 205, 232
Lsp1109I	GCAGC	2 cut(s)	67, 151
MaeI	CTAG	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	51, 63, 234
MboI	GATC	3 cut(s)	49, 61, 232
MboII	GAAGA	3 cut(s)	26, 125, 193
MluCI	AATT	3 cut(s)	117, 129, 246
MnlI	CCTC	5 cut(s)	70, 73, 81, 232, 287
MseI	TTAA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	3 cut(s)	49, 61, 232
PasI	CCCWGGG	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	57, 141
PshAI	GACNNNNGTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	2 cut(s)	56, 140
Sau3AI	GATC	3 cut(s)	49, 61, 232
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	5 cut(s)	34, 60, 144, 256, 343
SfcI	CTRYAG	2 cut(s)	137, 316
Sse9I	AATT	3 cut(s)	117, 129, 246
SspMI	CTAG	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	122
TasI	AATT	3 cut(s)	117, 129, 246
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TseI	GCWGC	2 cut(s)	55, 139
TspDTI	ATGAA	1 cut(s)	27
XapI	RAATTY	1 cut(s)	117
XspI	CTAG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.