Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

23191810 .. 23194603

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGCCGGAGCATTCCGTTGCTAGCTTCTGGACTCAGTCCAATGCCTTGCTCAGAAAGAGTTTAACATATCAGATTAGCCCCCTTTTTTCTGGAACCATCAAGGCCGTCGGGAAACATGTGTCGAGATGGAAAGTGGGCGATCAGAAATTTTCAACATTAATGGTTATGCAGCTTGCATTTCAAAGCCTCGGTGTGGTCTATGGTGATTTAGGCACATCTCCTCTCTATGTGTTCTACAATACATTTCCTAATGGAATTAGTGACCCGGAGGATTTAGTTGGAGCTTTATCTGTCATCATATATTCCCTCACTCTAATTGCCCTCCTGAAGTATGTATTTATTGTCTGTAGAGCAAATGACAACGGTCAAGGTAACATTCAACCAATATATTACTCTACTAGTTCTCTGCGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

9.07

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	59 - 131	2.4e-22	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	156, 185, 383
AhlI	ACTAGT	1 cut(s)	401
AluBI	AGCT	3 cut(s)	27, 175, 287
AluI	AGCT	3 cut(s)	27, 175, 287
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	7, 414
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	218
AsuNHI	GCTAGC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	107, 123
BceAI	ACGGC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	24, 402, 418
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	6, 97
BmrFI	CCNGG	1 cut(s)	269
BmtI	GCTAGC	1 cut(s)	27
BoxI	GACNNNNGTC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	50, 67
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	8, 269
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	49, 66
BspLI	GGNNCC	2 cut(s)	6, 97
BspOI	GCTAGC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	25, 177
BstDEI	CTNAG	2 cut(s)	36, 53
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 414
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	25, 177
CfoI	GCGC	2 cut(s)	7, 414
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	6 cut(s)	27, 81, 107, 175, 189, 287
CviKI_1	RGCY	6 cut(s)	27, 81, 107, 175, 189, 287
DdeI	CTNAG	2 cut(s)	36, 53
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	122
FaiI	YATR	9 cut(s)	70, 120, 170, 204, 231, 302, 304, 336, 391
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	3 cut(s)	24, 402, 418
GlaI	GCGC	2 cut(s)	6, 413
GluI	GCNGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	8, 269
HhaI	GCGC	2 cut(s)	7, 414
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	2 cut(s)	5, 412
HinP1I	GCGC	2 cut(s)	5, 412
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	2 cut(s)	8, 269
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	56, 75, 147
Hpy188III	TCNNGA	5 cut(s)	31, 93, 112, 126, 328
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	172, 179
HpyF3I	CTNAG	2 cut(s)	36, 53
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	2 cut(s)	5, 412
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	10, 284, 419
LpnPI	CCDG	5 cut(s)	16, 21, 78, 282, 341
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	3 cut(s)	24, 402, 418
MaeIII	GTNAC	2 cut(s)	263, 374
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MluCI	AATT	3 cut(s)	149, 258, 318
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	200, 234, 265, 320, 335
MseI	TTAA	2 cut(s)	65, 161
MspI	CCGG	2 cut(s)	8, 269
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	13
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	6, 97
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	122
PciI	ACATGT	1 cut(s)	118
PctI	GAATGC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	28
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	28
PscI	ACATGT	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	6, 97
PsyI	GACNNNGTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	65, 161
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	4 cut(s)	29, 177, 289, 376
SfcI	CTRYAG	1 cut(s)	349
SfoI	GGCGCC	1 cut(s)	6
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	3 cut(s)	149, 258, 318
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	24, 402, 418
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	149, 258, 318
Tru1I	TTAA	2 cut(s)	65, 161
Tru9I	TTAA	2 cut(s)	65, 161
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	7
Tth111I	GACNNNGTC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	161
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	3 cut(s)	24, 402, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.