Rw2G003360

Potassium transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
3148579 .. 3149060
482 bp
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UTR
Exon/CDS
Intron
Rw2G003360.1

Sequence Viewer

Length: 306 bp
ATGAGGAGGCCAGCAGGCTTAGGACTATGTACAGAAATTCTCCTCGCTATTGCTTTTTCAGTTTGCATTCCGAAGTCTTGGGGTTTTTTTGGAGATTTAGGCACTTCCCCCTTTTATGTTTTCTACAATACCCTTCCTCATGGAATTTCAGATCCTAAGGACGTGGATGGAGATCTGTCATTGATTATATATTGTCTTACTCTTATCCCACTCATCAAGTACATATTTGTTGTTTGTCGAGCAAATGACAGTGGGCAAGGTAAACCAAATTCTGTTTGTACACTTGCTTCATTAAATGTTTGGTAA

Protein Analysis

101

Amino Acids

11.03

Weight (kDa)

6.5

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans PF02705 30 - 87 2e-14 K+ potassium transporter integral membrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 3 cut(s) 36, 144, 268
AfaI GTAC 3 cut(s) 31, 221, 280
AjiI CACGTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 8
ApoI RAATTY 3 cut(s) 36, 144, 268
AxyI CCTNAGG 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BccI CCATC 1 cut(s) 161
BglII AGATCT 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 171
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 19, 32
BshFI GGCC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 1 cut(s) 10
Bsp1407I TGTACA 2 cut(s) 29, 278
Bsp143I GATC 2 cut(s) 151, 172
BspANI GGCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 146
BsrGI TGTACA 2 cut(s) 29, 278
BssMI GATC 2 cut(s) 151, 172
Bst4CI ACNGT 1 cut(s) 251
BstAUI TGTACA 2 cut(s) 29, 278
BstC8I GCNNGC 2 cut(s) 12, 16
BstDEI CTNAG 2 cut(s) 19, 156
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 154, 175
BstMBI GATC 2 cut(s) 151, 172
BstX2I RGATCY 2 cut(s) 151, 172
BstYI RGATCY 2 cut(s) 151, 172
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 12, 16
Csp6I GTAC 3 cut(s) 30, 220, 279
CviAII CATG 1 cut(s) 140
CviJI RGCY 2 cut(s) 10, 18
CviKI_1 RGCY 2 cut(s) 10, 18
CviQI GTAC 3 cut(s) 30, 220, 279
DdeI CTNAG 2 cut(s) 19, 156
DpnI GATC 2 cut(s) 153, 174
DpnII GATC 2 cut(s) 151, 172
Eco81I CCTNAGG 1 cut(s) 156
FaeI CATG 1 cut(s) 143
FaiI YATR 6 cut(s) 28, 117, 141, 188, 190, 224
FatI CATG 1 cut(s) 139
FokI GGATG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 263, 281
Hpy188I TCNGA 2 cut(s) 72, 151
Hpy8I GTNNAC 2 cut(s) 263, 281
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 2 cut(s) 19, 156
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 2 cut(s) 151, 172
LpnPI CCDG 1 cut(s) 24
MaeII ACGT 1 cut(s) 162
MalI GATC 2 cut(s) 153, 174
MboI GATC 2 cut(s) 151, 172
MflI RGATCY 2 cut(s) 151, 172
MluCI AATT 3 cut(s) 36, 144, 268
MnlI CCTC 2 cut(s) 53, 147
MseI TTAA 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 66
NdeII GATC 2 cut(s) 151, 172
NlaIII CATG 1 cut(s) 143
PctI GAATGC 1 cut(s) 66
PsuI RGATCY 2 cut(s) 151, 172
RsaI GTAC 3 cut(s) 31, 221, 280
RsaNI GTAC 3 cut(s) 30, 220, 279
SaqAI TTAA 1 cut(s) 293
Sau3AI GATC 2 cut(s) 151, 172
SetI ASST 2 cut(s) 165, 262
Sse9I AATT 3 cut(s) 36, 144, 268
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 238
TasI AATT 3 cut(s) 36, 144, 268
TatI WGTACW 3 cut(s) 29, 219, 278
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 256
XapI RAATTY 3 cut(s) 36, 144, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.