Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001374.1

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Forward (+)

205885 .. 207055

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001374.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggctacagatgtaatactgcaaaacactgtggaagaggaggaaagccagcatggggatcaagtctctgaacagctcaaagagaatcaactagtttcaagccaaaagtttcaaagatttgactccttggacatcgagtctggcgctgatcacaggcactccaaggaaatgacgtggtccgtaatactgaccctggcatttcagagcattggagttgtatatggagatcttggtacttcaccactttatgtgttctcgagcaccttccccaatggaatcaaagataaagatgacatcttgggtgttctttctttgattctttatacagtcacattaatccccttgattaagtatgttctcatcgtcctacaagcaaatgataacggcgatggagggacatttgcactgtactctctcttatgtcgacacgcaaagattagtttgattccgagccagcaagaagaggattccaatgtttcaaatttcaaacttgaagttcctagcagacgtctaaaaatggcatcaactcttaaatctgcactggagaacagtcactttgccaaagtcttcttactctttgccacaatgcttggcacttccatggtcattggcgatggtgtcctcactccttgcatctcaggttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

215

Amino Acids

23.62

Weight (kDa)

4.94

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	424
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	508
AfaI	GTAC	2 cut(s)	235, 410
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	99, 113, 480, 487, 494
AhdI	GACNNNNNGTC	1 cut(s)	136
AhlI	ACTAGT	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	481
AseI	ATTAAT	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	2 cut(s)	383, 608
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 501
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	177
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	530, 642
BpiI	GAAGAC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	4 cut(s)	126, 162, 192, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	4 cut(s)	126, 162, 192, 600
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	58, 148, 226
Bsp19I	CCATGG	1 cut(s)	600
BspPI	GGATC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	4 cut(s)	126, 162, 192, 600
BssMI	GATC	3 cut(s)	58, 148, 226
BssNI	GRCGYC	1 cut(s)	508
BssT1I	CCWWGG	3 cut(s)	126, 162, 600
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	4 cut(s)	31, 328, 408, 551
Bst6I	CTCTTC	2 cut(s)	30, 456
BstACI	GRCGYC	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	50, 455
BstDEI	CTNAG	1 cut(s)	637
BstDSI	CCRYGG	1 cut(s)	600
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	3 cut(s)	61, 151, 229
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	58, 148, 226
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	600
BtgZI	GCGATG	2 cut(s)	402, 627
BtrI	CACGTC	1 cut(s)	174
BtsIMutI	CAGTG	3 cut(s)	27, 404, 539
Cac8I	GCNNGC	2 cut(s)	50, 455
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	234, 409
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	2 cut(s)	53, 601
CviJI	RGCY	5 cut(s)	5, 48, 76, 102, 453
CviKI_1	RGCY	5 cut(s)	5, 48, 76, 102, 453
CviQI	GTAC	2 cut(s)	234, 409
DdeI	CTNAG	1 cut(s)	637
DpnI	GATC	3 cut(s)	60, 150, 228
DpnII	GATC	3 cut(s)	58, 148, 226
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	30, 456
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	2 cut(s)	30, 456
Eco130I	CCWWGG	3 cut(s)	126, 162, 600
Eco47I	GGWCC	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	3 cut(s)	126, 162, 600
ErhI	CCWWGG	3 cut(s)	126, 162, 600
FaeI	CATG	2 cut(s)	56, 604
FaiI	YATR	9 cut(s)	54, 220, 222, 249, 324, 354, 421, 602, 646
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	52, 600
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	92, 501
GlaI	GCGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	147
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	56, 604
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	7 cut(s)	85, 122, 137, 276, 316, 445, 467
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	3 cut(s)	70, 204, 450
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	4 cut(s)	31, 328, 408, 551
HpyCH4IV	ACGT	2 cut(s)	173, 508
HpyCH4V	TGCA	4 cut(s)	22, 404, 539, 633
HpyF3I	CTNAG	1 cut(s)	637
HpySE526I	ACGT	2 cut(s)	173, 508
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	56, 604
HspAI	GCGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	58, 148, 226
LpnPI	CCDG	8 cut(s)	62, 126, 139, 179, 206, 467, 527, 624
LweI	GCATC	2 cut(s)	530, 642
MaeI	CTAG	2 cut(s)	92, 501
MaeII	ACGT	2 cut(s)	173, 508
MaeIII	GTNAC	2 cut(s)	328, 551
MalI	GATC	3 cut(s)	60, 150, 228
MboI	GATC	3 cut(s)	58, 148, 226
MboII	GAAGA	3 cut(s)	47, 473, 559
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	1 cut(s)	481
MlyI	GAGTC	2 cut(s)	116, 146
MnlI	CCTC	5 cut(s)	31, 34, 386, 457, 632
MseI	TTAA	3 cut(s)	335, 348, 531
MslI	CAYNNNNRTG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	3 cut(s)	58, 148, 226
NlaIII	CATG	2 cut(s)	56, 604
NmuCI	GTSAC	2 cut(s)	328, 551
PaeR7I	CTCGAG	1 cut(s)	256
PfeI	GAWTC	5 cut(s)	85, 276, 316, 445, 467
PflFI	GACNNNGTC	1 cut(s)	175
PleI	GAGTC	2 cut(s)	116, 145
PpsI	GAGTC	2 cut(s)	116, 145
PshBI	ATTAAT	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	235, 410
RsaNI	GTAC	2 cut(s)	234, 409
RseI	CAYNNNNRTG	1 cut(s)	599
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	335, 348, 531
Sau3AI	GATC	3 cut(s)	58, 148, 226
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	116, 146
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	5 cut(s)	78, 176, 266, 511, 643
SfaNI	GCATC	2 cut(s)	530, 642
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	92, 501
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	3 cut(s)	126, 162, 600
TaaI	ACNGT	4 cut(s)	31, 328, 408, 551
TaiI	ACGT	2 cut(s)	176, 511
TaqI	TCGA	3 cut(s)	135, 257, 424
TasI	AATT	1 cut(s)	481
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	5 cut(s)	85, 276, 316, 445, 467
Tru1I	TTAA	3 cut(s)	335, 348, 531
Tru9I	TTAA	3 cut(s)	335, 348, 531
TscAI	CASTG	3 cut(s)	34, 411, 546
TseFI	GTSAC	2 cut(s)	328, 551
Tsp45I	GTSAC	2 cut(s)	328, 551
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	34, 411, 546
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	2 cut(s)	92, 501
ZraI	GACGTC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.