Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

32730282 .. 32731914

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1230300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCTGACAATGGAGACCCTGAGAAAAAAGGTGGGGTCTGGGATTTGGATAAGCAGCTTGACCAGCCAATGGACGAGGAGGCTAAAACGGTCAGAAATGTGTGCGGGGACCAGACGTATTGTTCAGTGGGAACGGTTCTACAGCTTGCATTTCAAAGCCTTGGTGTGGTCTATGGAGATTTGGGCACATCCCCTTTGTATGTTTTCAAAAATATATTTCCTGCAGGAATCGATGCCCCGGAAGATTTACTCGGAGCTTTATCGGTCATCATATATTCCCTCACTCTTATCGTACTCGTGAAGTATGTTCTTATTGTCTGTAGAGCGAATGACAACGGTCAAGGTGGAACATTTGCTCTTTATTCATTACTCTGTCGACATGCAAAAATAAAGACCGTTCCTAACCAAGACCAAAGTGATGAGGAGCTAACAACATTTAGCCGTTCTACATTTGGTGAGAAATCATTTTCTGAATGCACCAAGCGATGGTTGGAAGGACATGCAGTCATGCGGAACATACTTCTTATTCTTGTCCTGGTTGGCTCTTGCGCTGTGATAGGGGATGGGATTCTTACTCCAGCCATATCAGGTATACTATCTTCATGTAGTAGGATCAATCTTCTGTCTAAGTATGTTTTTAATCTGCTTACAGATTCAGATCTTTTTCGACATATTGAAAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

229

Amino Acids

24.93

Weight (kDa)

4.9

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	49 - 210	1.6e-38	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	70, 486
AccI	GTMKAC	2 cut(s)	376, 592
AciI	CCGC	2 cut(s)	105, 511
AclWI	GGATC	1 cut(s)	620
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	70, 166, 486
AgsI	TTSAA	3 cut(s)	155, 208, 677
AhdI	GACNNNNNGTC	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	4 cut(s)	58, 145, 257, 427
AluI	AGCT	4 cut(s)	58, 145, 257, 427
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	583, 615
BauI	CACGAG	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	480, 557
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	3 cut(s)	140, 222, 319
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	239, 536
Bme18I	GGWCC	1 cut(s)	109
BmeRI	GACNNNNNGTC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	2 cut(s)	239, 536
BmsI	GCATC	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	160, 237
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 166, 486
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	160, 237
BseGI	GGATG	2 cut(s)	188, 568
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	70, 166, 486
BseMII	CTCAG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	92, 437
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	70, 166, 486
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	479
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	612, 658
BspACI	CCGC	2 cut(s)	105, 511
BspCNI	CTCAG	1 cut(s)	13
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	160, 237
BssMI	GATC	2 cut(s)	612, 658
BssNAI	GTATAC	1 cut(s)	593
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	160
Bst1107I	GTATAC	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	4 cut(s)	91, 136, 338, 397
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	21, 627
BstF5I	GGATG	2 cut(s)	188, 568
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	2 cut(s)	615, 661
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	612, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	383, 503
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	237, 534
BstSFI	CTRYAG	3 cut(s)	140, 222, 319
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BstZ17I	GTATAC	1 cut(s)	593
Bsu15I	ATCGAT	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	188, 568
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	4 cut(s)	380, 500, 508, 603
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	21, 627
DpnI	GATC	2 cut(s)	614, 660
DpnII	GATC	2 cut(s)	612, 658
DriI	GACNNNNNGTC	1 cut(s)	503
Eam1105I	GACNNNNNGTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	383, 503, 511, 606
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	379, 499, 507, 602
FauI	CCCGC	1 cut(s)	98
FblI	GTMKAC	2 cut(s)	376, 592
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	2 cut(s)	175, 575
Fsp4HI	GCNGC	1 cut(s)	56
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	561
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	383, 503, 511, 606
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	3 cut(s)	228, 568, 653
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	377, 593
Hpy188I	TCNGA	5 cut(s)	7, 95, 254, 472, 658
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	377, 593
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	4 cut(s)	91, 136, 338, 397
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	5 cut(s)	149, 224, 383, 477, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	21, 627
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	383, 503, 511, 606
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	612, 658
LmnI	GCTCC	2 cut(s)	254, 424
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	116
MalI	GATC	2 cut(s)	614, 660
MboI	GATC	2 cut(s)	612, 658
MboII	GAAGA	3 cut(s)	254, 591, 611
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	4 cut(s)	70, 73, 290, 415
MseI	TTAA	1 cut(s)	639
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	239, 536
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	612, 658
NlaIII	CATG	4 cut(s)	383, 503, 511, 606
NlaIV	GGNNCC	1 cut(s)	110
NspI	RCATGY	2 cut(s)	383, 503
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	228, 568, 653
PflMI	CCANNNNNTGG	2 cut(s)	70, 486
PkrI	GCNGC	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	612, 658
Sau96I	GGNCC	1 cut(s)	109
SbfI	CCTGCAGG	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	239, 536
SdaI	CCTGCAGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	8 cut(s)	34, 60, 119, 147, 259, 346, 429, 592
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	3 cut(s)	140, 222, 319
SinI	GGWCC	1 cut(s)	109
Sse8387I	CCTGCAGG	1 cut(s)	226
SsiI	CCGC	2 cut(s)	105, 511
StyD4I	CCNGG	2 cut(s)	237, 534
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	4 cut(s)	91, 136, 338, 397
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	231, 376, 667
TaqII	GACCGA	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	228, 568, 653
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	354, 591
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	2 cut(s)	70, 486
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	2 cut(s)	383, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmiI	GTMKAC	2 cut(s)	376, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.