Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Reverse (-)

32709902 .. 32713001

Gene Structure 3100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1230200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGCTGATGAAAGTACCGATGAGAACAGCAGCGTTCGGGTTTTGGATCAGCAGTTTGATCAGCCCATGGATGAAGAGGCTAAAAGGCTGAGGAACATGCACGAGGAAAAGAAATTTTCAGCATTAGCGCTCGTGCAGGTAGCATTTCAAAGCCTTGGCGTTGTATATGGAGATTTAGGCACATCTCCTTTGTATGTTTTCTACAATACGTTTCCTGATGGAATTGGTGACCCAGAGGATTTGGTTGAAGCTTTATCTGTTATTATCTATTCCCTTACTCTTGTTGCACTCCTGAAGTACGTTTTTATTGTCTGTAGAGCAAATGACAATGGTCAAGGTGGAACGTTTGCTCTCTATTCATTACTCTGTCGATATGCAAAAATAAAGGCTATTCCTAACCAAGACCAGACGGATGAGGCACTCACAACATATAGTCGTTCTACATTTGGTGAGAAATCATTTGCTGCAAGAACCAGGAGATGGTTGGAGGGAAATGCATTTATGCAGAGCACACTTCTTATTCTTGTCCTAGTTGGCTCTTCCGCGGTGATTGGGGATGGGATTCTGACTCCAGCCATATCAGTTCTGTCAGCAGTTGGGGGGATCAACGTACGCCACTCTGAGATTAGTAATGAGGTAGTCGTGCTTGTTGCTGTTGTTATACTGGTACTTTTGTTTAGTATGCAACCTTATGGTACGGATAAACTTTGTTTCCTGTTTGCACCAATCGTACTCCTTTGGTTTCTCGTAACTGGAGGAATTGGCATGTTCAATATTTGGAAGTATGATATGTTTGAAATGGTACCAGGCATATTGTTTTTGGTTGATAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

280

Amino Acids

30.8

Weight (kDa)

4.66

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	49 - 262	2.1e-58	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
Acc65I	GGTACC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	483
AccII	CGCG	1 cut(s)	548
AciI	CCGC	2 cut(s)	546, 548
AclI	AACGTT	1 cut(s)	347
AclWI	GGATC	2 cut(s)	57, 614
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	7 cut(s)	19, 302, 615, 672, 700, 735, 807
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	152, 251, 775, 800
AjnI	CCWGG	2 cut(s)	476, 808
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	57, 614
Aor51HI	AGCGCT	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	5, 33, 467
ApoI	RAATTY	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	242, 464, 562
BaeI	ACNNNNGTAYC	2 cut(s)	662, 695
BanI	GGYRCC	1 cut(s)	805
BauI	CACGAG	2 cut(s)	104, 134
Bbv12I	GWGCWC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	45, 454
BccI	CCATC	3 cut(s)	215, 477, 554
BciT130I	CCWGG	2 cut(s)	478, 810
BclI	TGATCA	1 cut(s)	61
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	6, 34, 468
BlsI	GCNGC	3 cut(s)	7, 35, 469
Bme1390I	CCNGG	2 cut(s)	478, 810
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	2 cut(s)	478, 810
BoxI	GACNNNNGTC	1 cut(s)	333
BpmI	CTGGAG	2 cut(s)	558, 777
Bpu10I	CCTNAGC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	69, 157, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	672, 760
BseBI	CCWGG	2 cut(s)	478, 810
BseDI	CCNNGG	3 cut(s)	69, 157, 546
BseGI	GGATG	3 cut(s)	79, 421, 565
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	83, 615
BseNI	ACTGG	2 cut(s)	672, 760
BseXI	GCAGC	2 cut(s)	45, 454
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	548
BshNI	GGYRCC	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	515
BsiWI	CGTACG	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	49, 61, 606
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	546, 548
BspCNI	CTCAG	2 cut(s)	84, 616
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	1 cut(s)	807
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	57, 614
BspQI	GCTCTTC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	672, 760
BssECI	CCNNGG	3 cut(s)	69, 157, 546
BssMI	GATC	3 cut(s)	49, 61, 606
BssSI	CACGAG	2 cut(s)	104, 134
BssT1I	CCWWGG	2 cut(s)	69, 157
Bst2BI	CACGAG	2 cut(s)	104, 134
Bst2UI	CCWGG	2 cut(s)	478, 810
Bst6I	CTCTTC	2 cut(s)	72, 547
BstDEI	CTNAG	2 cut(s)	92, 624
BstDSI	CCRYGG	2 cut(s)	69, 546
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	79, 421, 565
BstFNI	CGCG	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	52, 64, 609
BstMBI	GATC	3 cut(s)	49, 61, 606
BstNI	CCWGG	2 cut(s)	478, 810
BstNSI	RCATGY	2 cut(s)	103, 772
BstPAI	GACNNNNGTC	1 cut(s)	333
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	476, 808
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	45, 454
BtgI	CCRYGG	2 cut(s)	69, 546
BtsCI	GGATG	3 cut(s)	79, 421, 565
BveI	ACCTGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	133
Cfr42I	CCGCGG	1 cut(s)	549
Csp6I	GTAC	7 cut(s)	18, 301, 614, 671, 699, 734, 806
CviAII	CATG	3 cut(s)	70, 100, 769
CviJI	RGCY	9 cut(s)	5, 67, 83, 91, 156, 254, 392, 540, 578
CviKI_1	RGCY	9 cut(s)	5, 67, 83, 91, 156, 254, 392, 540, 578
CviQI	GTAC	7 cut(s)	18, 301, 614, 671, 699, 734, 806
DdeI	CTNAG	2 cut(s)	92, 624
DpnI	GATC	3 cut(s)	51, 63, 608
DpnII	GATC	3 cut(s)	49, 61, 606
Eam1104I	CTCTTC	2 cut(s)	72, 547
EarI	CTCTTC	2 cut(s)	72, 547
Eco130I	CCWWGG	2 cut(s)	69, 157
Eco47III	AGCGCT	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	476, 808
EcoT14I	CCWWGG	2 cut(s)	69, 157
EcoT22I	ATGCAT	1 cut(s)	502
ErhI	CCWWGG	2 cut(s)	69, 157
FaeI	CATG	3 cut(s)	73, 103, 772
FatI	CATG	3 cut(s)	69, 99, 768
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	6, 34, 468
FokI	GGATG	3 cut(s)	86, 428, 572
Fsp4HI	GCNGC	3 cut(s)	6, 34, 468
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	6, 34, 468
GsuI	CTGGAG	2 cut(s)	558, 777
HaeII	RGCGCY	1 cut(s)	134
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	73, 103, 772
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	565, 571
HphI	GGTGA	3 cut(s)	242, 464, 562
Hpy188I	TCNGA	2 cut(s)	570, 625
Hpy188III	TCNNGA	2 cut(s)	218, 295
HpyCH4IV	ACGT	4 cut(s)	212, 303, 347, 612
HpyCH4V	TGCA	9 cut(s)	103, 139, 290, 380, 470, 500, 508, 688, 725
HpyF3I	CTNAG	2 cut(s)	92, 624
HpySE526I	ACGT	4 cut(s)	212, 303, 347, 612
Hsp92II	CATG	3 cut(s)	73, 103, 772
HspAI	GCGC	1 cut(s)	131
KpnI	GGTACC	1 cut(s)	809
Ksp22I	TGATCA	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	549
Kzo9I	GATC	3 cut(s)	49, 61, 606
LguI	GCTCTTC	1 cut(s)	547
Lsp1109I	GCAGC	2 cut(s)	45, 454
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	4 cut(s)	212, 303, 347, 612
MaeIII	GTNAC	2 cut(s)	230, 751
MalI	GATC	3 cut(s)	51, 63, 608
MboI	GATC	3 cut(s)	49, 61, 606
MboII	GAAGA	2 cut(s)	89, 534
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	3 cut(s)	116, 225, 762
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	8 cut(s)	73, 87, 100, 232, 412, 484, 631, 752
Mph1103I	ATGCAT	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	478, 810
MvaI	CCWGG	2 cut(s)	478, 810
MvnI	CGCG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	49, 61, 606
NlaIII	CATG	3 cut(s)	73, 103, 772
NlaIV	GGNNCC	1 cut(s)	807
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	2 cut(s)	103, 772
PciSI	GCTCTTC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	565
Pfl23II	CGTACG	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	7, 35, 469
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	476, 808
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	476, 808
PspLI	CGTACG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	807
RsaI	GTAC	7 cut(s)	19, 302, 615, 672, 700, 735, 807
RsaNI	GTAC	7 cut(s)	18, 301, 614, 671, 699, 734, 806
SacII	CCGCGG	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	547
SatI	GCNGC	3 cut(s)	6, 34, 468
Sau3AI	GATC	3 cut(s)	49, 61, 606
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	2 cut(s)	478, 810
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	9 cut(s)	144, 215, 256, 306, 343, 350, 615, 642, 694
SfcI	CTRYAG	1 cut(s)	316
Sfr303I	CCGCGG	1 cut(s)	549
SgrBI	CCGCGG	1 cut(s)	549
Sse9I	AATT	3 cut(s)	116, 225, 762
SsiI	CCGC	2 cut(s)	546, 548
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	476, 808
StyI	CCWWGG	2 cut(s)	69, 157
TaiI	ACGT	4 cut(s)	215, 306, 350, 615
TaqI	TCGA	1 cut(s)	373
TasI	AATT	3 cut(s)	116, 225, 762
TfiI	GAWTC	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	3 cut(s)	5, 33, 467
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	27, 90, 351
TspGWI	ACGGA	2 cut(s)	428, 716
Van91I	CCANNNNNTGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	2 cut(s)	103, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.