Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001609

Physical Location & Seq

Genomic Coordinates Forward (+)

22569046 .. 22569788

Gene Structure 743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCTGATGAAGAGGTACTAGTGGAACACCCTACAGATCAAGGAAGCCAAGATCTTCAGGAAGTTTCTGATCATCATGATCATGGTAAGGATCAACTCAAGGGGAAGAAACTTTCATGGCAAAAGTTGCGAAGATACGACTCCTTGGACCTCGAGTCACGCAGTTTCACAGCTCCCCATGGCCATGCCTCCAAGGGCGCGGGCTGGGAAGTGATAATGCAACTGGCATTTCAGAGCATCGGAATAGTTTACGGGGACATTGGTACATCACCTCTGTATGTGTATGCGAGCACCTTCAGCAAAGGCATCAACCATGACGATGACATTTTGGGTGTTCTTTCTTTGATCCTTTACACTCTCACCGTAATCCCTCTCATTAAGTACGTTTTTATCGTCTTACGGGCCAACGATAATGGCGATGGTAAGACTCCATACATCTTCTACATCTGTATAATTACAAACAAAACAACATCGATCACTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

162

Amino Acids

18.06

Weight (kDa)

5.54

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	75 - 143	1.2e-23	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30541 FvH4_6g30550 FvH4_c6g00050 FvH4_c6g00050 FvH4_c6g00050
malus_domestica	MD03G1283500.v1.1 MD03G1283600.v1.1 MD10G1230200.v1.1 MD10G1230300.v1.1 MD11G1302600.v1.1 MD11G1302900.v1.1 MD11G1303100.v1.1
prunus_persica	Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1 Prupe.8G256200_v2.0.a1
pyrus_communis	pycom03g22450 pycom03g22460
rosa_chinensis	RchiOBHm_Chr2g0136981 RchiOBHm_Chr5g0020481 RchiOBHm_Chr6g0293251
rosa_laevigata	RLG00000011964 RLG00000033905
rosa_multiflora	Rmu_co8314359.1_g000001 Rmu_sc0001374.1_g000063 Rmu_sc0001374.1_g000064 Rmu_sc0021490.1_g000001 Rmu_ssc0000162.1_g000030
rosa_roxburghii	Rroxscaffold_2G00107800 Rroxscaffold_2G00107830 Rroxscaffold_7G00174310
rosa_rugosa	Rorug02G0336400 Rorug06G0233800 Rorug06G0233800 Rorug06G0233800
rosa_samantha	Rh2AG385800 Rh2BG392700 Rh2CG373000 Rh2DG047100 Rh2DG408800 Rh2DG408900 Rh3DG241600 Rh3DG283500 Rh6AG346700 Rh6BG354100 Rh6CG360600 Rh6DG347100
rosa_wichuraiana	Rw2G003360 Rw2G031570 Rw6G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	99, 340
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	41, 280
AfaI	GTAC	3 cut(s)	18, 265, 383
AhdI	GACNNNNNGTC	1 cut(s)	154
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	99, 340
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	181, 402
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	148, 402
AsuHPI	GGTGA	2 cut(s)	261, 352
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	293
BccI	CCATC	1 cut(s)	413
BclI	TGATCA	2 cut(s)	70, 79
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	148, 402
BmsI	GCATC	2 cut(s)	246, 315
BpuEI	CTTGAG	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	144, 178, 192
Bse1I	ACTGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	473
BseDI	CCNNGG	3 cut(s)	144, 178, 192
BseNI	ACTGG	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	183, 404
BshVI	ATCGAT	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	183, 404
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	183, 404
BspDI	ATCGAT	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	76
BspPI	GGATC	2 cut(s)	99, 340
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	3 cut(s)	144, 178, 192
BssMI	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
BssT1I	CCWWGG	3 cut(s)	144, 178, 192
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	202, 289
BstDSI	CCRYGG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	7 cut(s)	40, 55, 73, 82, 94, 348, 477
BstMBI	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 297
BstSFI	CTRYAG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	183, 404
BsuTUI	ATCGAT	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	202, 289
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	148, 402
ClaI	ATCGAT	1 cut(s)	473
Csp6I	GTAC	3 cut(s)	17, 264, 382
CviAII	CATG	6 cut(s)	77, 83, 117, 179, 185, 314
CviJI	RGCY	5 cut(s)	48, 173, 183, 204, 404
CviKI_1	RGCY	5 cut(s)	48, 173, 183, 204, 404
CviQI	GTAC	3 cut(s)	17, 264, 382
DpnI	GATC	7 cut(s)	39, 54, 72, 81, 93, 347, 476
DpnII	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	6
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	144, 178, 192
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	41, 280
Eco88I	CYCGRG	1 cut(s)	152
EcoT14I	CCWWGG	3 cut(s)	144, 178, 192
ErhI	CCWWGG	3 cut(s)	144, 178, 192
FaeI	CATG	6 cut(s)	80, 86, 120, 182, 188, 317
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	6 cut(s)	76, 82, 116, 178, 184, 313
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	2 cut(s)	70, 79
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	183, 404
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	6 cut(s)	80, 86, 120, 182, 188, 317
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	3 cut(s)	140, 155, 427
HphI	GGTGA	2 cut(s)	261, 352
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	70, 234, 242
Hpy188III	TCNNGA	2 cut(s)	59, 77
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 297
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	6 cut(s)	80, 86, 120, 182, 188, 317
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	2 cut(s)	70, 79
Kzo9I	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	18, 44, 190, 209
LweI	GCATC	2 cut(s)	246, 315
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	7 cut(s)	39, 54, 72, 81, 93, 347, 476
MboI	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
MboII	GAAGA	5 cut(s)	23, 47, 118, 144, 430
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	1 cut(s)	453
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	3 cut(s)	134, 164, 421
MnlI	CCTC	5 cut(s)	7, 161, 199, 282, 381
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	2 cut(s)	378, 484
MslI	CAYNNNNRTG	3 cut(s)	81, 183, 318
Msp20I	TGGCCA	1 cut(s)	183
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	127, 297
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
NlaIII	CATG	6 cut(s)	80, 86, 120, 182, 188, 317
NmuCI	GTSAC	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 414
PleI	GAGTC	3 cut(s)	134, 163, 421
PpsI	GAGTC	3 cut(s)	134, 163, 421
PspFI	CCCAGC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	148, 402
PspXI	VCTCGAGB	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	3 cut(s)	18, 265, 383
RsaNI	GTAC	3 cut(s)	17, 264, 382
RseI	CAYNNNNRTG	3 cut(s)	81, 183, 318
SaqAI	TTAA	2 cut(s)	378, 484
Sau3AI	GATC	7 cut(s)	37, 52, 70, 79, 91, 345, 474
Sau96I	GGNCC	2 cut(s)	148, 402
SchI	GAGTC	3 cut(s)	134, 164, 421
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	6 cut(s)	18, 153, 175, 274, 296, 387
SfaNI	GCATC	2 cut(s)	246, 315
SfcI	CTRYAG	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	3 cut(s)	81, 183, 318
SmlI	CTYRAG	2 cut(s)	98, 152
SmoI	CTYRAG	2 cut(s)	98, 152
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	3 cut(s)	144, 178, 192
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	153, 473
TasI	AATT	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	378, 484
Tru9I	TTAA	2 cut(s)	378, 484
TseFI	GTSAC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	24, 105
VpaK11BI	GGWCC	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.