Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011280

Physical Location & Seq

Genomic Coordinates Reverse (-)

21864933 .. 21868921

Gene Structure 3989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G256300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGCCCAATAAATCCCTTCAAGTTTCTATTTTTAAATATATCAGACAGGGCCAAAGGAATCAGGAGTCAAGTAGACGGAGAAACACAGAGACAGTCGATTTGGCCGAAACCCTAAATACGAGCAAGAAGAAGAAGAAGAAGAGTAGGAGGGAAATGAAGGGAGCACTAGCAAGGCTTCAGCTAGGTGAAAGCCACCAATTGTCGTTCCCCCCGTCATCAAAATTATCTTCTTCCAACTCCTCTCGCTTCCAGAACCTTTTAGACTCCGGAGCTGCCGACGCCATCCTTCCCTCATCGTCTCCTCTCGGTACTGACCTTGACCCCAATTTCGACGACAGAGATTTCATTCTCAGCCAAGACTTTTTCTGCACCCCTGATTATATCACCCCGGATAATCAACATACGTTGAACGGTTGGGATTGCAATAAGGAAAATATCCCTTGCCCAAAATCACCAGAGAAGTCAAATACGGTTAAATCCAAGAGACGCAGACAGGGTGATGTCTTATTGAATCCTCTCAGCCCTACATTTTCCGGAAATCAGCAGATAGTGGAACTGGGAACGGATTCTTTTGGCATAGATGAAGCTAAGATAGAGAAACCAACAGTAACTGAAGTTCGAAAGACACAAAATTATGTATCTCAATCTGCAGTGGCTTTACGCTGTCGTGTCATGCCTCCTCCATGTTTTAAGAATCCATATTTAAAGGATGCTTCAGAGATGGACATTGATCCTCTTGGCAACCAAAGATCGAAATGTGCTGCTTTCTTCCCTGCAATTATGGGAGGAAATGGCCTTTCACGCTATTGCGCTGATTTTCATGAGATTGAGCAAATTGGTAGCGGGTACTTCAGTCATGTTTTTAAAGCCTTGAACAGAATTGATGGTTGTTTGTATGCTGTGAAACTTAGCATGAAGCAGTTGCATCAGGACACAGAAAGGAGAAAGGCTTTGATGGAAGTTCAATCTTTGGCAGCTTTAGGTTCCCATGAAAATATTGTTGGATACTACTCGTCTTGGTTTGAAAATGAGCAGCTCTACATTCAGATGGAATTATGCGATCACAGCTTATCCATCTACAAGTTTTCCCGAACCTTCACAGAGGGAGAGATTTTAGAAGTCTTGTTTCAGATTGCAAAGGCGTTGCAGTTTATACACAAGAAAGGAATAGCTCACTTAGATGTAAAACCTGATAATATATATGTCAAGAATGGTGTTTATAAGCTTGGTGACTTTGGATGTGCAACTCTACTTGATAAAAGCCTACCAATTGAAGAGGGTGATGCTCGATATATGCCTCAAGAAATCCTGAATGAGAAATATGATGATCTTGACAAGGCTGATATCTTCTCCTTGGGAGTTGCCATTTATGAGCTTATTAGAGGTTTACCTTTGCCCGAATCAGGACCTCAAATTTTAAATCTTAGGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCGCTGCAATTTCAGAACTTACTCAAGGTCATGTTGGACCCAAATCCAGTTTGGAGGCCATCAGCTAAAGATTTGGTTGAAAATCCAATTTTTGACAAGGTCCTGAGAAAGGGACGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

527

Amino Acids

59.32

Weight (kDa)

8.18

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02970
fragaria_vesca	FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040 FvH4_c6g00040
malus_domestica	MD03G1283400.v1.1 MD11G1303200.v1.1
prunus_persica	Prupe.8G256300_v2.0.a1
pyrus_communis	pycom03g22420 pycom11g26490
rosa_chinensis	RchiOBHm_Chr6g0293261
rosa_laevigata	RLG00000011963
rosa_multiflora	Rmu_ssc0000162.1_g000031
rosa_roxburghii	Rroxscaffold_7G00174300
rosa_rugosa	Rorug06G0233800
rosa_samantha	Rh6AG346800 Rh6BG354200 Rh6CG360700 Rh6DG347200
rosa_wichuraiana	Rw6G030190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1221
AccI	GTMKAC	1 cut(s)	73
AccIII	TCCGGA	2 cut(s)	266, 533
AciI	CCGC	1 cut(s)	843
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	1413
AcuI	CTGAAG	4 cut(s)	161, 633, 699, 835
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	310, 848
AfiI	CCNNNNNNNGG	2 cut(s)	1403, 1567
AgsI	TTSAA	8 cut(s)	20, 409, 511, 874, 965, 1025, 1274, 1538
AjnI	CCWGG	1 cut(s)	1450
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	3 cut(s)	83, 303, 478
AlwI	GGATC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	611
Aor13HI	TCCGGA	2 cut(s)	266, 533
AoxI	GGCC	4 cut(s)	49, 102, 793, 1514
ApeKI	GCWGC	5 cut(s)	272, 761, 974, 1033, 1462
ApoI	RAATTY	1 cut(s)	1413
ArsI	GACNNNNNNTTYG	4 cut(s)	82, 114, 311, 343
Asp700I	GAANNNNTTC	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	812
AspS9I	GGNCC	4 cut(s)	49, 1406, 1495, 1558
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	6 cut(s)	197, 376, 444, 509, 1241, 1292
AsuII	TTCGAA	1 cut(s)	619
AvaII	GGWCC	3 cut(s)	1406, 1495, 1558
BaeI	ACNNNNGTAYC	2 cut(s)	838, 871
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	5 cut(s)	259, 748, 986, 1045, 1449
BccI	CCATC	7 cut(s)	290, 715, 878, 949, 1042, 1082, 1525
BciT130I	CCWGG	1 cut(s)	1452
BciVI	GTATCC	1 cut(s)	998
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	3 cut(s)	83, 303, 478
BfaI	CTAG	2 cut(s)	167, 182
BfmI	CTRYAG	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	998
BisI	GCNGC	5 cut(s)	273, 762, 975, 1034, 1463
BlsI	GCNGC	5 cut(s)	274, 763, 976, 1035, 1464
Bme1390I	CCNGG	2 cut(s)	389, 1452
Bme18I	GGWCC	3 cut(s)	1406, 1495, 1558
BmgT120I	GGNCC	4 cut(s)	49, 1406, 1495, 1558
BmiI	GGNNCC	2 cut(s)	985, 1497
BmrFI	CCNGG	2 cut(s)	389, 1452
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	3 cut(s)	700, 934, 1273
BmuI	ACTGGG	1 cut(s)	566
Bpu14I	TTCGAA	1 cut(s)	619
BpuEI	CTTGAG	2 cut(s)	1284, 1466
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	387, 1353
BsaWI	WCCGGW	2 cut(s)	266, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	1403, 1567
Bse1I	ACTGG	2 cut(s)	561, 1505
BseAI	TCCGGA	2 cut(s)	266, 533
BseBI	CCWGG	1 cut(s)	1452
BseDI	CCNNGG	2 cut(s)	387, 1353
BseGI	GGATG	3 cut(s)	282, 715, 1244
BseLI	CCNNNNNNNGG	2 cut(s)	1403, 1567
BseMII	CTCAG	3 cut(s)	364, 532, 1553
BseNI	ACTGG	2 cut(s)	561, 1505
BseRI	GAGGAG	3 cut(s)	229, 291, 669
BseXI	GCAGC	5 cut(s)	259, 748, 986, 1045, 1449
BsgI	GTGCAG	1 cut(s)	352
BshFI	GGCC	4 cut(s)	51, 104, 795, 1516
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	267, 389, 534
BslI	CCNNNNNNNGG	2 cut(s)	1403, 1567
BsmAI	GTCTC	3 cut(s)	83, 303, 478
BsmBI	CGTCTC	2 cut(s)	303, 478
BsnI	GGCC	4 cut(s)	51, 104, 795, 1516
Bsp119I	TTCGAA	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp13I	TCCGGA	2 cut(s)	266, 533
Bsp143I	GATC	4 cut(s)	730, 749, 1060, 1327
BspACI	CCGC	1 cut(s)	843
BspANI	GGCC	4 cut(s)	51, 104, 795, 1516
BspCNI	CTCAG	3 cut(s)	363, 531, 1554
BspEI	TCCGGA	2 cut(s)	266, 533
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	2 cut(s)	985, 1497
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	725
BspT104I	TTCGAA	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	561, 1505
BssECI	CCNNGG	2 cut(s)	387, 1353
BssMI	GATC	4 cut(s)	730, 749, 1060, 1327
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	1353
Bst2UI	CCWGG	1 cut(s)	1452
Bst4CI	ACNGT	4 cut(s)	94, 413, 472, 607
Bst6I	CTCTTC	2 cut(s)	134, 1269
BstACI	GRCGYC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	619
BstDEI	CTNAG	8 cut(s)	350, 518, 588, 908, 1177, 1424, 1562, 1578
BstENI	CCTNNNNNAGG	1 cut(s)	1565
BstF5I	GGATG	3 cut(s)	282, 715, 1244
BstHHI	GCGC	1 cut(s)	812
BstKTI	GATC	4 cut(s)	733, 752, 1063, 1330
BstMAI	GTCTC	3 cut(s)	83, 303, 478
BstMBI	GATC	4 cut(s)	730, 749, 1060, 1327
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 801, 1065
BstNI	CCWGG	1 cut(s)	1452
BstSCI	CCNGG	2 cut(s)	387, 1450
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	5 cut(s)	259, 748, 986, 1045, 1449
BsuI	GTATCC	1 cut(s)	998
BsuRI	GGCC	4 cut(s)	51, 104, 795, 1516
BtsCI	GGATG	3 cut(s)	282, 715, 1244
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	1 cut(s)	812
Cfr13I	GGNCC	4 cut(s)	49, 1406, 1495, 1558
CseI	GACGC	2 cut(s)	287, 495
Csp6I	GTAC	2 cut(s)	309, 847
CviAII	CATG	7 cut(s)	673, 684, 821, 857, 913, 989, 1489
CviQI	GTAC	2 cut(s)	309, 847
DdeI	CTNAG	8 cut(s)	350, 518, 588, 908, 1177, 1424, 1562, 1578
DpnI	GATC	4 cut(s)	732, 751, 1062, 1329
DpnII	GATC	4 cut(s)	730, 749, 1060, 1327
DraI	TTTAAA	4 cut(s)	34, 705, 865, 1419
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	134, 1269
EarI	CTCTTC	2 cut(s)	134, 1269
Eco130I	CCWWGG	1 cut(s)	1353
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	3 cut(s)	1406, 1495, 1558
Eco57I	CTGAAG	4 cut(s)	161, 633, 699, 835
EcoNI	CCTNNNNNAGG	1 cut(s)	1565
EcoO109I	RGGNCCY	2 cut(s)	1406, 1558
EcoRII	CCWGG	1 cut(s)	1450
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	1 cut(s)	1353
ErhI	CCWWGG	1 cut(s)	1353
Esp3I	CGTCTC	2 cut(s)	303, 478
FaeI	CATG	7 cut(s)	676, 687, 824, 860, 916, 992, 1492
FatI	CATG	7 cut(s)	672, 683, 820, 856, 912, 988, 1488
FauI	CCCGC	1 cut(s)	836
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	273, 762, 975, 1034, 1463
FokI	GGATG	3 cut(s)	269, 722, 1251
Fsp4HI	GCNGC	5 cut(s)	273, 762, 975, 1034, 1463
FspBI	CTAG	2 cut(s)	167, 182
GlaI	GCGC	1 cut(s)	811
GluI	GCNGC	5 cut(s)	273, 762, 975, 1034, 1463
HaeIII	GGCC	4 cut(s)	51, 104, 795, 1516
HapII	CCGG	3 cut(s)	267, 389, 534
HgaI	GACGC	2 cut(s)	287, 495
HhaI	GCGC	1 cut(s)	812
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	676, 687, 824, 860, 916, 992, 1492
Hin6I	GCGC	1 cut(s)	810
HinP1I	GCGC	1 cut(s)	810
HindIII	AAGCTT	1 cut(s)	1223
HinfI	GANTC	7 cut(s)	58, 65, 263, 511, 566, 694, 1400
HpaII	CCGG	3 cut(s)	267, 389, 534
HphI	GGTGA	6 cut(s)	197, 376, 444, 509, 1241, 1292
Hpy166II	GTNNAC	2 cut(s)	74, 1388
Hpy188I	TCNGA	5 cut(s)	44, 718, 1047, 1131, 1473
Hpy8I	GTNNAC	2 cut(s)	74, 1388
Hpy99I	CGWCG	2 cut(s)	281, 335
HpyAV	CCTTC	5 cut(s)	26, 151, 296, 1105, 1457
HpyCH4III	ACNGT	4 cut(s)	94, 413, 472, 607
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	9 cut(s)	369, 423, 650, 776, 925, 1136, 1147, 1244, 1465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 801, 1065
HpyF3I	CTNAG	8 cut(s)	350, 518, 588, 908, 1177, 1424, 1562, 1578
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	7 cut(s)	676, 687, 824, 860, 916, 992, 1492
HspAI	GCGC	1 cut(s)	810
Kpn2I	TCCGGA	2 cut(s)	266, 533
Kzo9I	GATC	4 cut(s)	730, 749, 1060, 1327
LmnI	GCTCC	2 cut(s)	161, 269
Lsp1109I	GCAGC	5 cut(s)	259, 748, 986, 1045, 1449
LweI	GCATC	3 cut(s)	700, 934, 1273
MaeI	CTAG	2 cut(s)	167, 182
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	607, 1229
MalI	GATC	4 cut(s)	732, 751, 1062, 1329
MboI	GATC	4 cut(s)	730, 749, 1060, 1327
MfeI	CAATTG	2 cut(s)	197, 1269
MhlI	GDGCHC	1 cut(s)	166
MlyI	GAGTC	2 cut(s)	74, 257
MmeI	TCCRAC	3 cut(s)	258, 982, 1473
MroI	TCCGGA	2 cut(s)	266, 533
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	6 cut(s)	33, 474, 690, 704, 864, 1418
MslI	CAYNNNNRTG	2 cut(s)	1046, 1179
MspI	CCGG	3 cut(s)	267, 389, 534
MspR9I	CCNGG	2 cut(s)	389, 1452
MunI	CAATTG	2 cut(s)	197, 1269
MvaI	CCWGG	1 cut(s)	1452
MwoI	GCNNNNNNNGC	3 cut(s)	278, 801, 1065
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	4 cut(s)	730, 749, 1060, 1327
NlaIII	CATG	7 cut(s)	676, 687, 824, 860, 916, 992, 1492
NlaIV	GGNNCC	2 cut(s)	985, 1497
NmuCI	GTSAC	1 cut(s)	1229
NspV	TTCGAA	1 cut(s)	619
PagI	TCATGA	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 209
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	5 cut(s)	58, 511, 566, 694, 1400
PflFI	GACNNNGTC	1 cut(s)	1556
PkrI	GCNGC	5 cut(s)	274, 763, 976, 1035, 1464
PleI	GAGTC	2 cut(s)	73, 257
PpsI	GAGTC	2 cut(s)	73, 257
PpuMI	RGGWCCY	2 cut(s)	1406, 1558
PsiI	TTATAA	1 cut(s)	1221
Psp5II	RGGWCCY	2 cut(s)	1406, 1558
Psp6I	CCWGG	1 cut(s)	1450
PspGI	CCWGG	1 cut(s)	1450
PspN4I	GGNNCC	2 cut(s)	985, 1497
PspPI	GGNCC	4 cut(s)	49, 1406, 1495, 1558
PspPPI	RGGWCCY	2 cut(s)	1406, 1558
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	611
PsyI	GACNNNGTC	1 cut(s)	1556
RsaI	GTAC	2 cut(s)	310, 848
RsaNI	GTAC	2 cut(s)	309, 847
RseI	CAYNNNNRTG	2 cut(s)	1046, 1179
SaqAI	TTAA	6 cut(s)	33, 474, 690, 704, 864, 1418
SatI	GCNGC	5 cut(s)	273, 762, 975, 1034, 1463
Sau3AI	GATC	4 cut(s)	730, 749, 1060, 1327
Sau96I	GGNCC	4 cut(s)	49, 1406, 1495, 1558
SchI	GAGTC	2 cut(s)	74, 257
ScrFI	CCNGG	2 cut(s)	389, 1452
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	700, 934, 1273
SfcI	CTRYAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	619
SinI	GGWCC	3 cut(s)	1406, 1495, 1558
SmiMI	CAYNNNNRTG	2 cut(s)	1046, 1179
SmlI	CTYRAG	2 cut(s)	1299, 1481
SmoI	CTYRAG	2 cut(s)	1299, 1481
SsiI	CCGC	1 cut(s)	843
SspI	AATATT	1 cut(s)	997
SspMI	CTAG	2 cut(s)	167, 182
StyD4I	CCNGG	2 cut(s)	387, 1450
StyI	CCWWGG	1 cut(s)	1353
TaaI	ACNGT	4 cut(s)	94, 413, 472, 607
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	5 cut(s)	96, 330, 619, 752, 1288
TfiI	GAWTC	5 cut(s)	58, 511, 566, 694, 1400
Tru1I	TTAA	6 cut(s)	33, 474, 690, 704, 864, 1418
Tru9I	TTAA	6 cut(s)	33, 474, 690, 704, 864, 1418
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	1229
TseI	GCWGC	5 cut(s)	272, 761, 974, 1033, 1462
Tsp45I	GTSAC	1 cut(s)	1229
TspDTI	ATGAA	6 cut(s)	170, 334, 597, 809, 929, 1005
TspGWI	ACGGA	2 cut(s)	91, 578
TspRI	CASTG	1 cut(s)	657
Tth111I	GACNNNGTC	1 cut(s)	1556
VpaK11BI	GGWCC	3 cut(s)	1406, 1495, 1558
XagI	CCTNNNNNAGG	1 cut(s)	1565
XapI	RAATTY	1 cut(s)	1413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1506
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	2 cut(s)	167, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.