PPR repeat family
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1023800.v1.1 MD00G1183300.v1.1 MD05G1258100.v1.1 MD15G1239900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0336651 RchiOBHm_Chr6g0259821 |
| rosa_multiflora | Rmu_co8156576.1_g000001 Rmu_sc0004189.1_g000028 |
| rosa_rugosa | Rorug07G0184200 |
| rosa_samantha | Rh5BG011300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 41 |
| AcsI | RAATTY | 1 cut(s) | 28 |
| AluBI | AGCT | 1 cut(s) | 167 |
| AluI | AGCT | 1 cut(s) | 167 |
| Alw21I | GWGCWC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 1 cut(s) | 34 |
| ApoI | RAATTY | 1 cut(s) | 28 |
| AspLEI | GCGC | 1 cut(s) | 76 |
| AspS9I | GGNCC | 1 cut(s) | 120 |
| AvaII | GGWCC | 1 cut(s) | 120 |
| Bbv12I | GWGCWC | 1 cut(s) | 145 |
| BbvI | GCAGC | 1 cut(s) | 21 |
| BccI | CCATC | 1 cut(s) | 62 |
| BisI | GCNGC | 1 cut(s) | 35 |
| BlsI | GCNGC | 1 cut(s) | 36 |
| Bme18I | GGWCC | 1 cut(s) | 120 |
| BmgT120I | GGNCC | 1 cut(s) | 120 |
| BseGI | GGATG | 1 cut(s) | 67 |
| BseMII | CTCAG | 1 cut(s) | 158 |
| BseRI | GAGGAG | 1 cut(s) | 25 |
| BseXI | GCAGC | 1 cut(s) | 21 |
| BsiHKAI | GWGCWC | 1 cut(s) | 145 |
| Bsp1286I | GDGCHC | 1 cut(s) | 145 |
| BspACI | CCGC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 3 cut(s) | 39, 43, 165 |
| BstDEI | CTNAG | 1 cut(s) | 144 |
| BstF5I | GGATG | 1 cut(s) | 67 |
| BstHHI | GCGC | 1 cut(s) | 76 |
| BstV1I | GCAGC | 1 cut(s) | 21 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 133 |
| BtsCI | GGATG | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 3 cut(s) | 39, 43, 165 |
| CfoI | GCGC | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 1 cut(s) | 120 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 112, 147 |
| CviAII | CATG | 1 cut(s) | 127 |
| CviJI | RGCY | 2 cut(s) | 45, 167 |
| CviKI_1 | RGCY | 2 cut(s) | 45, 167 |
| DdeI | CTNAG | 1 cut(s) | 144 |
| Eco32I | GATATC | 1 cut(s) | 96 |
| Eco47I | GGWCC | 1 cut(s) | 120 |
| EcoRI | GAATTC | 1 cut(s) | 28 |
| EcoRV | GATATC | 1 cut(s) | 96 |
| FaeI | CATG | 1 cut(s) | 130 |
| FaiI | YATR | 4 cut(s) | 48, 52, 128, 159 |
| FatI | CATG | 1 cut(s) | 126 |
| FauI | CCCGC | 1 cut(s) | 34 |
| Fnu4HI | GCNGC | 1 cut(s) | 35 |
| FokI | GGATG | 1 cut(s) | 74 |
| Fsp4HI | GCNGC | 1 cut(s) | 35 |
| GlaI | GCGC | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 35 |
| HhaI | GCGC | 1 cut(s) | 76 |
| Hin1II | CATG | 1 cut(s) | 130 |
| Hin6I | GCGC | 1 cut(s) | 74 |
| HinP1I | GCGC | 1 cut(s) | 74 |
| HindIII | AAGCTT | 1 cut(s) | 165 |
| Hpy166II | GTNNAC | 1 cut(s) | 120 |
| Hpy188I | TCNGA | 1 cut(s) | 147 |
| Hpy188III | TCNNGA | 1 cut(s) | 59 |
| Hpy8I | GTNNAC | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 1 cut(s) | 144 |
| Hsp92II | CATG | 1 cut(s) | 130 |
| HspAI | GCGC | 1 cut(s) | 74 |
| Lsp1109I | GCAGC | 1 cut(s) | 21 |
| MhlI | GDGCHC | 1 cut(s) | 145 |
| MluCI | AATT | 1 cut(s) | 28 |
| MmeI | TCCRAC | 1 cut(s) | 5 |
| MnlI | CCTC | 2 cut(s) | 3, 147 |
| MseI | TTAA | 1 cut(s) | 87 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| NlaIII | CATG | 1 cut(s) | 130 |
| PkrI | GCNGC | 1 cut(s) | 36 |
| PspPI | GGNCC | 1 cut(s) | 120 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 1 cut(s) | 35 |
| Sau96I | GGNCC | 1 cut(s) | 120 |
| SduI | GDGCHC | 1 cut(s) | 145 |
| SetI | ASST | 2 cut(s) | 158, 169 |
| SgeI | CNNG | 9 cut(s) | 17, 33, 50, 54, 71, 103, 129, 139, 176 |
| SinI | GGWCC | 1 cut(s) | 120 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| Sse9I | AATT | 1 cut(s) | 28 |
| SsiI | CCGC | 1 cut(s) | 41 |
| TaqI | TCGA | 1 cut(s) | 98 |
| TasI | AATT | 1 cut(s) | 28 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TseI | GCWGC | 1 cut(s) | 34 |
| VpaK11BI | GGWCC | 1 cut(s) | 120 |
| XapI | RAATTY | 1 cut(s) | 28 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 130 |