Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018489

Physical Location & Seq

Genomic Coordinates Reverse (-)

799479 .. 801667

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTGTGTGGAACGCAATTCTTTCGGGGTATAAGAGTTTGGGGGATGTATGGAAAGCACGCTCAATGTTTGATCAAATGAAGCCGCGAGGTGTTAATTCATGGTGTTGCGTGATCGACGCGAATGTGAAGAATGGCGACAATGAGCATGGTGCAACGCTCTTTCGGAATATGGTGATTGAGGAAGGCATTGTCACTGTTTGCCAGCTAAAATATGAGCGCAACTACAATCAATTGCCAGCCCAGAGTTATGATTGGCCAAGATTCCGATGCAATTATATGCCTGCCTGCCTACTAAGTGGCGGATGGCCGGAATGCCGGATCAATTCGACACATTTTGACGGTACAATATCGATCTTTGTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

122

Amino Acids

13.96

Weight (kDa)

7.58

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018489)

Species	Orthologous Gene IDs
malus_domestica	MD00G1023800.v1.1 MD00G1183300.v1.1 MD05G1258100.v1.1 MD15G1239900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336651 RchiOBHm_Chr6g0259821
rosa_multiflora	Rmu_co8156576.1_g000001 Rmu_sc0004189.1_g000028
rosa_rugosa	Rorug07G0184200
rosa_samantha	Rh5BG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	88, 122
AciI	CCGC	2 cut(s)	86, 303
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	2 cut(s)	257, 308
AfaI	GTAC	1 cut(s)	346
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	2 cut(s)	257, 308
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	259
BccI	CCATC	1 cut(s)	300
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BclI	TGATCA	1 cut(s)	73
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	353
BseGI	GGATG	2 cut(s)	52, 311
Bsh1236I	CGCG	2 cut(s)	88, 122
BshFI	GGCC	2 cut(s)	259, 310
BshVI	ATCGAT	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	311, 319
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	259, 310
Bsp143I	GATC	4 cut(s)	73, 114, 321, 354
BspACI	CCGC	2 cut(s)	86, 303
BspANI	GGCC	2 cut(s)	259, 310
BspDI	ATCGAT	1 cut(s)	353
BspFNI	CGCG	2 cut(s)	88, 122
BspPI	GGATC	1 cut(s)	329
BssMI	GATC	4 cut(s)	73, 114, 321, 354
Bst4CI	ACNGT	2 cut(s)	199, 344
BstC8I	GCNNGC	5 cut(s)	61, 206, 240, 285, 289
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	52, 311
BstFNI	CGCG	2 cut(s)	88, 122
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	4 cut(s)	76, 117, 324, 357
BstMBI	GATC	4 cut(s)	73, 114, 321, 354
BstUI	CGCG	2 cut(s)	88, 122
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	259, 310
BsuTUI	ATCGAT	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	52, 311
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	5 cut(s)	61, 206, 240, 285, 289
CfoI	GCGC	1 cut(s)	222
ClaI	ATCGAT	1 cut(s)	353
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	2 cut(s)	102, 149
CviJI	RGCY	6 cut(s)	5, 85, 208, 242, 259, 310
CviKI_1	RGCY	6 cut(s)	5, 85, 208, 242, 259, 310
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	4 cut(s)	75, 116, 323, 356
DpnII	GATC	4 cut(s)	73, 114, 321, 354
EaeI	YGGCCR	2 cut(s)	257, 308
EciI	GGCGGA	1 cut(s)	318
FaeI	CATG	2 cut(s)	105, 152
FatI	CATG	2 cut(s)	101, 148
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	2 cut(s)	59, 318
Fsp4HI	GCNGC	1 cut(s)	86
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	259, 310
HapII	CCGG	2 cut(s)	311, 319
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	105, 152
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	311, 319
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	168, 269
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	199, 344
HpyCH4V	TGCA	2 cut(s)	155, 273
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	105, 152
HspAI	GCGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	73, 114, 321, 354
LpnPI	CCDG	7 cut(s)	218, 252, 257, 297, 301, 324, 332
LweI	GCATC	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	4 cut(s)	75, 116, 323, 356
MboI	GATC	4 cut(s)	73, 114, 321, 354
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	5 cut(s)	18, 97, 233, 274, 325
MluNI	TGGCCA	1 cut(s)	259
MnlI	CCTC	2 cut(s)	83, 175
Mox20I	TGGCCA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	2 cut(s)	311, 319
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	320
MvnI	CGCG	2 cut(s)	88, 122
NdeII	GATC	4 cut(s)	73, 114, 321, 354
NlaIII	CATG	2 cut(s)	105, 152
NmuCI	GTSAC	1 cut(s)	193
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	87
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	4 cut(s)	73, 114, 321, 354
SetI	ASST	2 cut(s)	94, 210
SfaNI	GCATC	1 cut(s)	260
Sse9I	AATT	5 cut(s)	18, 97, 233, 274, 325
SsiI	CCGC	2 cut(s)	86, 303
TaaI	ACNGT	2 cut(s)	199, 344
TaqI	TCGA	3 cut(s)	117, 329, 353
TasI	AATT	5 cut(s)	18, 97, 233, 274, 325
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	90, 95
TspRI	CASTG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.