Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

OG0018489

Physical Location & Seq

Genomic Coordinates Reverse (-)

131088 .. 131801

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004189.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgtctaagaagaacatggtagtgtggaacacaatgttttcggggtataagagtttgggggatgtacagaaagcacgctcaatgtttgatcgaatgaagccgcgaggtgttaattcatggtgttgcatgatcgacgcgaatgtgaagaatggtgacaatgagcgtggcgcaacgctctttcggaatatggtgattgaggaaggtataaagccatttgcgctgcatttccataattccggtggacagcggtcggtgatcggattccggctatcggtaaccagattccggagaaagttggctagattcctgcacccggtgaccggattctggcgaaagttggccagattctggcgaccagtgacggactccgacgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

125

Amino Acids

14.5

Weight (kDa)

11.14

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018489)

Species	Orthologous Gene IDs
malus_domestica	MD00G1023800.v1.1 MD00G1183300.v1.1 MD05G1258100.v1.1 MD15G1239900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336651 RchiOBHm_Chr6g0259821
rosa_multiflora	Rmu_co8156576.1_g000001 Rmu_sc0004189.1_g000028
rosa_rugosa	Rorug07G0184200
rosa_samantha	Rh5BG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccII	CGCG	2 cut(s)	103, 137
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	2 cut(s)	101, 247
AcoI	YGGCCR	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	6 cut(s)	271, 285, 313, 320, 327, 348
AlwNI	CAGNNNCTG	1 cut(s)	348
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	170, 220
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	4 cut(s)	164, 202, 265, 328
BalI	TGGCCA	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	314
BfaI	CTAG	2 cut(s)	300, 376
BisI	GCNGC	2 cut(s)	101, 221
BlsI	GCNGC	2 cut(s)	102, 222
Bme1390I	CCNGG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	314
BoxI	GACNNNNGTC	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	372
BsaWI	WCCGGW	3 cut(s)	236, 285, 320
Bsc4I	CCNNNNNNNGG	6 cut(s)	271, 285, 313, 320, 327, 348
Bse1I	ACTGG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	285
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	6 cut(s)	271, 285, 313, 320, 327, 348
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	103, 137
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	251
BsiSI	CCGG	5 cut(s)	237, 265, 286, 314, 321
BslI	CCNNNNNNNGG	6 cut(s)	271, 285, 313, 320, 327, 348
BsnI	GGCC	1 cut(s)	341
Bsp13I	TCCGGA	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	88, 129, 255
BspACI	CCGC	2 cut(s)	101, 247
BspANI	GGCC	1 cut(s)	341
BspEI	TCCGGA	1 cut(s)	285
BspFNI	CGCG	2 cut(s)	103, 137
BsrGI	TGTACA	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	3 cut(s)	88, 129, 255
BssNI	GRCGYC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	6
BstEII	GGTNACC	2 cut(s)	274, 316
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	103, 137
BstHHI	GCGC	2 cut(s)	170, 220
BstKTI	GATC	3 cut(s)	91, 132, 258
BstMBI	GATC	3 cut(s)	88, 129, 255
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstPAI	GACNNNNGTC	1 cut(s)	247
BstPI	GGTNACC	2 cut(s)	274, 316
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	2 cut(s)	103, 137
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	76
CaiI	CAGNNNCTG	1 cut(s)	348
CfoI	GCGC	2 cut(s)	170, 220
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	3 cut(s)	16, 117, 127
CviJI	RGCY	5 cut(s)	100, 211, 268, 299, 341
CviKI_1	RGCY	5 cut(s)	100, 211, 268, 299, 341
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	90, 131, 257
DpnII	GATC	3 cut(s)	88, 129, 255
DraIII	CACNNNGTG	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	339
Eco91I	GGTNACC	2 cut(s)	274, 316
EcoO65I	GGTNACC	2 cut(s)	274, 316
FaeI	CATG	3 cut(s)	19, 120, 130
FaiI	YATR	7 cut(s)	17, 48, 118, 128, 188, 206, 231
FatI	CATG	3 cut(s)	15, 116, 126
Fnu4HI	GCNGC	2 cut(s)	101, 221
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	101, 221
FspBI	CTAG	2 cut(s)	300, 376
GlaI	GCGC	2 cut(s)	169, 219
GluI	GCNGC	2 cut(s)	101, 221
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	5 cut(s)	237, 265, 286, 314, 321
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	170, 220
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	19, 120, 130
Hin6I	GCGC	2 cut(s)	168, 218
HinP1I	GCGC	2 cut(s)	168, 218
HinfI	GANTC	6 cut(s)	261, 282, 303, 324, 345, 365
HpaII	CCGG	5 cut(s)	237, 265, 286, 314, 321
HphI	GGTGA	4 cut(s)	164, 202, 265, 328
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	183, 260, 370
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	2 cut(s)	137, 374
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	126, 223, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	19, 120, 130
HspAI	GCGC	2 cut(s)	168, 218
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	88, 129, 255
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	300, 376
MaeIII	GTNAC	4 cut(s)	152, 274, 316, 358
MalI	GATC	3 cut(s)	90, 131, 257
MboI	GATC	3 cut(s)	88, 129, 255
MboII	GAAGA	2 cut(s)	22, 157
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	2 cut(s)	112, 232
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	2 cut(s)	98, 190
Mox20I	TGGCCA	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	5 cut(s)	237, 265, 286, 314, 321
MspR9I	CCNGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	103, 137
MwoI	GCNNNNNNNGC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	88, 129, 255
NlaIII	CATG	3 cut(s)	19, 120, 130
NmuCI	GTSAC	3 cut(s)	152, 316, 358
PfeI	GAWTC	5 cut(s)	261, 282, 303, 324, 345
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	102, 222
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PshAI	GACNNNNGTC	1 cut(s)	247
PspEI	GGTNACC	2 cut(s)	274, 316
PstNI	CAGNNNCTG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	101, 221
Sau3AI	GATC	3 cut(s)	88, 129, 255
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	2 cut(s)	109, 205
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	112, 232
SsiI	CCGC	2 cut(s)	101, 247
SspMI	CTAG	2 cut(s)	300, 376
StyD4I	CCNGG	1 cut(s)	312
TaqI	TCGA	2 cut(s)	91, 132
TasI	AATT	2 cut(s)	112, 232
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	5 cut(s)	261, 282, 303, 324, 345
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	3 cut(s)	152, 316, 358
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	3 cut(s)	152, 316, 358
TspDTI	ATGAA	2 cut(s)	105, 110
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	2 cut(s)	300, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.