Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0018489

Physical Location & Seq

Genomic Coordinates Reverse (-)

19730621 .. 19731198

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1239900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGCAAGTACACCCAAATTCACACCCAAAATAATAATTCATGGACTCACACAAAAAGCTACCTTCTTGTTCGAATTTTAACATTTTACGTTGCTTTTGAGTGTCTCGATCATGCCCTAAAAATTTTCAAAAATGTTGACAACACAGTTACTACCGTTTGGAGCCAGATGATCAGAGGCCACGCTTGGAGCAAAACTCCGCGGAAGTCTGTTGAATTGTATAAACGGCTGGTGCACAAGAGGGTTCGGGTAAGTGGGTTTGGGGGTGGTGTCGAGTATGCACGCCTGGTGTTTGATGGTATGCGTGAAAGGAGTGTTGCAAGTTGGAATTCGCTGCTTGCGGGCTATGTATGGTGTCGGGATGTTGATGGGGCGCAGAGGATTTTTAACGAGATATCGAAGTGGAATGTTGTTTCGTGGACCACCATGATTGTGGGGTGTGCTCAGAATGGGAGGTATAAGCAAGCTTTGTCTTTGTTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

162

Amino Acids

18.65

Weight (kDa)

9.88

Isoelectric Point (pI)

21.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018489)

Species	Orthologous Gene IDs
malus_domestica	MD00G1023800.v1.1 MD00G1183300.v1.1 MD05G1258100.v1.1 MD15G1239900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336651 RchiOBHm_Chr6g0259821
rosa_multiflora	Rmu_co8156576.1_g000001 Rmu_sc0004189.1_g000028
rosa_rugosa	Rorug07G0184200
rosa_samantha	Rh5BG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	202
AciI	CCGC	3 cut(s)	200, 202, 341
AcsI	RAATTY	4 cut(s)	18, 75, 123, 328
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	130, 215
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	60, 467
AluI	AGCT	2 cut(s)	60, 467
Alw21I	GWGCWC	2 cut(s)	237, 445
Alw26I	GTCTC	1 cut(s)	110
Alw44I	GTGCAC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	178
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	4 cut(s)	18, 75, 123, 328
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	420
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	237, 445
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	290, 362
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	287
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
Bpu14I	TTCGAA	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	237, 445
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	237, 445
Bsp143I	GATC	2 cut(s)	109, 171
BspACI	CCGC	3 cut(s)	200, 202, 341
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	109, 171
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	148, 157
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	4 cut(s)	283, 339, 343, 465
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	112, 174
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	109, 171
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	4 cut(s)	283, 339, 343, 465
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	420
Cfr42I	CCGCGG	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	3 cut(s)	42, 113, 427
CviJI	RGCY	6 cut(s)	60, 165, 180, 229, 345, 467
CviKI_1	RGCY	6 cut(s)	60, 165, 180, 229, 345, 467
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	2 cut(s)	111, 173
DpnII	GATC	2 cut(s)	109, 171
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	396
FaeI	CATG	3 cut(s)	45, 116, 430
FaiI	YATR	9 cut(s)	43, 114, 222, 279, 302, 348, 352, 428, 459
FatI	CATG	3 cut(s)	41, 112, 426
FauI	CCCGC	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	335
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	45, 116, 430
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	12, 139, 235, 420
Hpy188I	TCNGA	2 cut(s)	176, 447
Hpy188III	TCNNGA	2 cut(s)	107, 359
Hpy8I	GTNNAC	4 cut(s)	12, 139, 235, 420
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	148, 157
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	6, 235, 281, 320
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	45, 116, 430
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	171
KspI	CCGCGG	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	109, 171
LmnI	GCTCC	2 cut(s)	162, 189
LpnPI	CCDG	4 cut(s)	179, 215, 272, 299
Lsp1109I	GCAGC	1 cut(s)	321
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	111, 173
MboI	GATC	2 cut(s)	109, 171
MhlI	GDGCHC	2 cut(s)	237, 445
MluCI	AATT	6 cut(s)	18, 37, 75, 123, 215, 328
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	170, 234, 372, 447
MseI	TTAA	2 cut(s)	80, 387
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	202
NdeII	GATC	2 cut(s)	109, 171
NlaIII	CATG	3 cut(s)	45, 116, 430
NlaIV	GGNNCC	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	420
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	431
SacII	CCGCGG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	80, 387
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	109, 171
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	237, 445
SetI	ASST	5 cut(s)	62, 66, 93, 458, 469
Sfr303I	CCGCGG	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	6 cut(s)	18, 37, 75, 123, 215, 328
SsiI	CCGC	3 cut(s)	200, 202, 341
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	148, 157
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	73, 108, 273, 398
TasI	AATT	6 cut(s)	18, 37, 75, 123, 215, 328
TatI	WGTACW	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	80, 387
Tru9I	TTAA	2 cut(s)	80, 387
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	4 cut(s)	18, 75, 123, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.