Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8156576.1

Orthogroup ID

OG0018489

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 491

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8156576.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgcctaggaagaacacggcagcgtggaacgaaatgctttcggggtataagagtttgggggatgtagagaaagcacgctcagtgtttgatcaaatgaagccgcgaggtgttgagtcatggagttgcatgatcgacgcgtatgtgaagaatggcgacaatgagcatggcgtaacgctctttcggaatatggtgattgaggaaggtataaagcctgacattgtaactctactgccggttttatcagtctgcgctgacatgggtccttgtggcttgttgcttgggaagtcagttcatgggtttgtggtgcgtcatgggttgaggttgagcgatttggttggttcagctttggttaccatgtatgctaagtgtcagtttttggactcagcggccaggctgttggcatttttgcaagagagggatttgaagacttggaatatgcatttttgtcgaacggtgcaaaagggctacacaaaagggccgttatatgtat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

163

Amino Acids

18.2

Weight (kDa)

8.83

Isoelectric Point (pI)

26.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018489)

Species	Orthologous Gene IDs
malus_domestica	MD00G1023800.v1.1 MD00G1183300.v1.1 MD05G1258100.v1.1 MD15G1239900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336651 RchiOBHm_Chr6g0259821
rosa_multiflora	Rmu_co8156576.1_g000001 Rmu_sc0004189.1_g000028
rosa_rugosa	Rorug07G0184200
rosa_samantha	Rh5BG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	103, 137
AciI	CCGC	2 cut(s)	101, 386
AcoI	YGGCCR	1 cut(s)	387
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AoxI	GGCC	2 cut(s)	387, 476
ApeKI	GCWGC	1 cut(s)	20
AspA2I	CCTAGG	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	260, 476
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	260
AvrII	CCTAGG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	33, 463
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	391
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	21, 101, 387
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	3 cut(s)	22, 102, 388
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 476
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	93, 396
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	103, 137
BshFI	GGCC	2 cut(s)	389, 478
BsiSI	CCGG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	389, 478
Bsp143I	GATC	2 cut(s)	88, 129
BspACI	CCGC	2 cut(s)	101, 386
BspANI	GGCC	2 cut(s)	389, 478
BspCNI	CTCAG	2 cut(s)	92, 395
BspFNI	CGCG	2 cut(s)	103, 137
BspLI	GGNNCC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	88, 129
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	79, 363, 382
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	103, 137
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	91, 132
BstMBI	GATC	2 cut(s)	88, 129
BstNI	CCWGG	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	103, 137
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	389, 478
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	260, 476
CseI	GACGC	2 cut(s)	143, 296
CviAII	CATG	7 cut(s)	117, 127, 164, 256, 293, 311, 355
CviJI	RGCY	8 cut(s)	100, 211, 270, 344, 389, 394, 465, 478
CviKI_1	RGCY	8 cut(s)	100, 211, 270, 344, 389, 394, 465, 478
DdeI	CTNAG	3 cut(s)	79, 363, 382
DpnI	GATC	2 cut(s)	90, 131
DpnII	GATC	2 cut(s)	88, 129
EaeI	YGGCCR	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	7 cut(s)	120, 130, 167, 259, 296, 314, 358
FatI	CATG	7 cut(s)	116, 126, 163, 255, 292, 310, 354
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	21, 101, 387
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	21, 101, 387
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	21, 101, 387
HaeIII	GGCC	2 cut(s)	389, 478
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	2 cut(s)	143, 296
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	7 cut(s)	120, 130, 167, 259, 296, 314, 358
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	2 cut(s)	113, 380
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	183
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	4 cut(s)	126, 409, 439, 457
HpyF3I	CTNAG	3 cut(s)	79, 363, 382
Hsp92II	CATG	7 cut(s)	120, 130, 167, 259, 296, 314, 358
HspAI	GCGC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 129
LpnPI	CCDG	4 cut(s)	225, 246, 376, 403
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	169, 220, 349
MalI	GATC	2 cut(s)	90, 131
MboI	GATC	2 cut(s)	88, 129
MboII	GAAGA	3 cut(s)	22, 157, 436
MluI	ACGCGT	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	122, 374
MnlI	CCTC	4 cut(s)	98, 190, 312, 408
Mph1103I	ATGCAT	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	2 cut(s)	103, 137
NdeII	GATC	2 cut(s)	88, 129
NlaIII	CATG	7 cut(s)	120, 130, 167, 259, 296, 314, 358
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	22, 102, 388
PleI	GAGTC	2 cut(s)	121, 374
PpsI	GAGTC	2 cut(s)	121, 374
PpuMI	RGGWCCY	1 cut(s)	260
PshAI	GACNNNNGTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	260, 476
PspPPI	RGGWCCY	1 cut(s)	260
SatI	GCNGC	3 cut(s)	21, 101, 387
Sau3AI	GATC	2 cut(s)	88, 129
Sau96I	GGNCC	2 cut(s)	260, 476
SchI	GAGTC	2 cut(s)	122, 374
ScrFI	CCNGG	1 cut(s)	391
SetI	ASST	4 cut(s)	109, 205, 323, 346
SinI	GGWCC	1 cut(s)	260
SsiI	CCGC	2 cut(s)	101, 386
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	132, 448
TauI	GCSGC	2 cut(s)	103, 389
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	110, 281
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	260
XmaJI	CCTAGG	1 cut(s)	5
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.