Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018489

Physical Location & Seq

Genomic Coordinates Forward (+)

15038766 .. 15039154

Gene Structure 389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGAAGCACCGAAATATCGTAACATGGAACTCAATGATCACTGGGTTTGTGAAACGCAGAGAGATGGCCAAGGCCCGGAACCTGTTCGACGAAATGCCTGAGAGAGATGTTGTGTCATGGAGTCTGATGACGATCTCGGGATATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

49

Amino Acids

5.85

Weight (kDa)

9.98

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 37	2.3e-10	PPR repeat family
PPR_1	PF12854	4 - 32	1.5e-06	PPR repeat
PPR	PF01535	7 - 37	3.6e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018489)

Species	Orthologous Gene IDs
malus_domestica	MD00G1023800.v1.1 MD00G1183300.v1.1 MD05G1258100.v1.1 MD15G1239900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336651 RchiOBHm_Chr6g0259821
rosa_multiflora	Rmu_co8156576.1_g000001 Rmu_sc0004189.1_g000028
rosa_rugosa	Rorug07G0184200
rosa_samantha	Rh5BG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	2 cut(s)	66, 72
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	68
BccI	CCATC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	69
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	68, 74
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	2 cut(s)	68, 74
BsoBI	CYCGRG	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	36, 132
BspANI	GGCC	2 cut(s)	68, 74
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	36, 132
BssT1I	CCWWGG	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	39, 135
BstMBI	GATC	2 cut(s)	36, 132
BstSCI	CCNGG	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	68, 74
BtsIMutI	CAGTG	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	2 cut(s)	24, 117
CviJI	RGCY	2 cut(s)	68, 74
CviKI_1	RGCY	2 cut(s)	68, 74
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	38, 134
DpnII	GATC	2 cut(s)	36, 132
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	27, 120
FaiI	YATR	3 cut(s)	25, 118, 144
FatI	CATG	2 cut(s)	23, 116
FbaI	TGATCA	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	68, 74
HapII	CCGG	1 cut(s)	76
Hin1II	CATG	2 cut(s)	27, 120
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	27, 120
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 132
LpnPI	CCDG	4 cut(s)	27, 89, 95, 111
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	38, 134
MboI	GATC	2 cut(s)	36, 132
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	76
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	36, 132
NlaIII	CATG	2 cut(s)	27, 120
NlaIV	GGNNCC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	36, 132
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	1 cut(s)	84
SgeI	CNNG	8 cut(s)	36, 54, 82, 87, 88, 94, 110, 129
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.