Rorug07G0184200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018489
Physical Location & Seq
Forward (+)
15405584 .. 15405793
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0184200.1

Sequence Viewer

Length: 210 bp
ATGGTGAAGAGCACCGAGCGCGTCTGCTACTACAAGACCTTAGGCCTCGAACCCAACTGCTCAATGGATGATGTCAGCCATGCTTACCATGAACTTTCCATAATATACCACCCGGACAAATACAAGTCCAGTTGCGGCATGACGGAAGACGAAGCCGCCGCCAAATTCCTAGAGATCAAACGCCTACAACATTCTCAAAGAACCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

69

Amino Acids

8.04

Weight (kDa)

6.89

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 61 2.2e-10 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 3 cut(s) 135, 156, 159
AcsI RAATTY 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 14
AoxI GGCC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 170
BisI GCNGC 3 cut(s) 136, 156, 159
BlsI GCNGC 3 cut(s) 137, 157, 160
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 3 cut(s) 135, 156, 159
BspANI GGCC 1 cut(s) 45
BspFNI CGCG 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 2
BsrI ACTGG 1 cut(s) 129
BssMI GATC 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 2
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 153
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 73
CfoI GCGC 1 cut(s) 21
CseI GACGC 1 cut(s) 10
CviAII CATG 3 cut(s) 80, 89, 139
CviJI RGCY 3 cut(s) 45, 78, 155
CviKI_1 RGCY 3 cut(s) 45, 78, 155
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco147I AGGCCT 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 40
FaeI CATG 3 cut(s) 83, 92, 142
FaiI YATR 5 cut(s) 81, 90, 101, 106, 140
FatI CATG 3 cut(s) 79, 88, 138
Fnu4HI GCNGC 3 cut(s) 136, 156, 159
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 136, 156, 159
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 20
GluI GCNGC 3 cut(s) 136, 156, 159
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 10
HhaI GCGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 83, 92, 142
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 3 cut(s) 83, 92, 142
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 2 cut(s) 126, 142
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 19, 158
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 164
MnlI CCTC 1 cut(s) 56
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 174
NlaIII CATG 3 cut(s) 83, 92, 142
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 2
PkrI GCNGC 3 cut(s) 137, 157, 160
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 3 cut(s) 136, 156, 159
Sau3AI GATC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 14
SetI ASST 1 cut(s) 41
Sse9I AATT 1 cut(s) 164
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 3 cut(s) 135, 156, 159
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 164
TauI GCSGC 3 cut(s) 138, 158, 161
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 158
XapI RAATTY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.