Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010694

Physical Location & Seq

Genomic Coordinates Reverse (-)

16975425 .. 16975625

Gene Structure 201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1084900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGATGTATTCATACGGCCTTCTGTACCTCCCTATCTCTATTTACTTTTTATTATGTGCAACCCAATTGGCTTTTAATGCATTTTTCTCATTCTTTCTTGATTCTCAAAAGTTCACTCCTTATGTACTCTACTCTCTTGTTCTTCTGACCATGTCTGCCTCCCTTCTTGAATTAATGCAGATTCCAAAATACTACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

67

Amino Acids

7.79

Weight (kDa)

6.5

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	1 - 59	1e-18	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44750 AT1G44750 AT1G44750 AT1G44750 AT1G44750 AT4G08700 AT5G41160
malus_domestica	MD00G1084900.v1.1
prunus_persica	Prupe.5G048000_v2.0.a1 Prupe.5G048000_v2.0.a1 Prupe.5G048000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0208071 RchiOBHm_Chr7g0208081
rosa_laevigata	RLG00000003256
rosa_rugosa	Rorug04G0100900 Rorug04G0101000 Rorug04G0101500 Rorug07G0101200
rosa_samantha	Rh7BG230800 Rh7CG250500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	26, 126
AgsI	TTSAA	1 cut(s)	170
AoxI	GGCC	1 cut(s)	16
AseI	ATTAAT	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	25, 125
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	2 cut(s)	18, 71
CviKI_1	RGCY	2 cut(s)	18, 71
CviQI	GTAC	2 cut(s)	25, 125
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	13, 55, 123, 152
FatI	CATG	1 cut(s)	150
FspBI	CTAG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	2 cut(s)	101, 181
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	98, 167
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	29, 173
HpyCH4V	TGCA	3 cut(s)	59, 80, 178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	154
MaeI	CTAG	1 cut(s)	199
MboII	GAAGA	1 cut(s)	134
MfeI	CAATTG	1 cut(s)	65
MluCI	AATT	2 cut(s)	65, 170
MnlI	CCTC	2 cut(s)	38, 169
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	2 cut(s)	75, 173
MunI	CAATTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	101, 181
PflFI	GACNNNGTC	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	151
RsaI	GTAC	2 cut(s)	26, 126
RsaNI	GTAC	2 cut(s)	25, 125
SaqAI	TTAA	2 cut(s)	75, 173
SetI	ASST	1 cut(s)	30
SgeI	CNNG	4 cut(s)	110, 149, 163, 179
Sse9I	AATT	2 cut(s)	65, 170
SspMI	CTAG	1 cut(s)	199
TasI	AATT	2 cut(s)	65, 170
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	101, 181
Tru1I	TTAA	2 cut(s)	75, 173
Tru9I	TTAA	2 cut(s)	75, 173
Tth111I	GACNNNGTC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	173
XspI	CTAG	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.