Rorug04G0101500

Purine nucleobase transmembrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010694
Physical Location & Seq
Forward (+)
15848439 .. 15851385
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0101500.1

Sequence Viewer

Length: 405 bp
ATGCACCTGCAGCTGGAGTCTGGACAATCAAGTAATGGCTTGCAACAGAATACTGTCGAGCTAAAGGGTCTGAAGGATATGTTGGCAACACTGAAAGGATATCAGCGGCTCAGGTATTCTCGTATCGCCATGGAAACTACTTACATGGACTTAAGGACAAAGGTCATAGATTCTTTTCGGTCTGAAAAAGCAGAAAGCCATCAATTCAAATTGCAGATGTGCTGCACCCGTCATGATGTTAAATTGGATAGATTTTCTCCTCCCATTATGATAAGCTGTCCTGCTAAAGGGAATATGGACCCGGGTCCTTGTGTTAGGGTCAGGAGTAATCTACCGAGGATTCCAGCAGTAATTATGGAGCTGAAGAAAAGAGTTTACCAGTTTTGGGGAAGGAGTGAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

134

Amino Acids

15.53

Weight (kDa)

9.69

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 15
AciI CCGC 1 cut(s) 106
AcuI CTGAAG 2 cut(s) 92, 383
AfiI CCNNNNNNNGG 3 cut(s) 13, 287, 385
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 4 cut(s) 13, 61, 276, 361
AluI AGCT 4 cut(s) 13, 61, 276, 361
Ama87I CYCGRG 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 10, 222
AspS9I GGNCC 2 cut(s) 298, 305
AsuC2I CCSGG 2 cut(s) 302, 303
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 2 cut(s) 298, 305
BbvI GCAGC 2 cut(s) 22, 209
BccI CCATC 1 cut(s) 207
BcnI CCSGG 2 cut(s) 302, 303
BfmI CTRYAG 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 3 cut(s) 11, 107, 223
BlsI GCNGC 3 cut(s) 12, 108, 224
Bme1390I CCNGG 2 cut(s) 302, 303
Bme18I GGWCC 2 cut(s) 298, 305
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 298, 305
BmiI GGNNCC 2 cut(s) 300, 306
BmrFI CCNGG 2 cut(s) 302, 303
BoxI GACNNNNGTC 2 cut(s) 161, 303
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 302, 303
BsaJI CCNNGG 3 cut(s) 129, 301, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 287, 385
Bse1I ACTGG 1 cut(s) 379
BseDI CCNNGG 3 cut(s) 129, 301, 335
BseLI CCNNNNNNNGG 3 cut(s) 13, 287, 385
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 22, 209
BsgI GTGCAG 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 13, 287, 385
BsoBI CYCGRG 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 300, 306
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 129, 301, 335
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 55
BstAFI CTTAAG 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 129
BstENI CCTNNNNNAGG 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstPAI GACNNNNGTC 2 cut(s) 161, 303
BstSCI CCNGG 2 cut(s) 300, 301
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 22, 209
BtgI CCRYGG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 41
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 298, 305
Cfr9I CCCGGG 1 cut(s) 301
CviAII CATG 3 cut(s) 130, 145, 233
CviJI RGCY 7 cut(s) 13, 39, 61, 109, 198, 276, 361
CviKI_1 RGCY 7 cut(s) 13, 39, 61, 109, 198, 276, 361
DdeI CTNAG 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 298, 305
Eco57I CTGAAG 2 cut(s) 92, 383
Eco88I CYCGRG 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 305
EcoRV GATATC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 133, 148, 236
FaiI YATR 8 cut(s) 80, 131, 146, 167, 234, 269, 296, 356
FatI CATG 3 cut(s) 129, 144, 232
Fnu4HI GCNGC 3 cut(s) 11, 107, 223
Fsp4HI GCNGC 3 cut(s) 11, 107, 223
GluI GCNGC 3 cut(s) 11, 107, 223
GsuI CTGGAG 1 cut(s) 35
HapII CCGG 1 cut(s) 302
Hin1II CATG 3 cut(s) 133, 148, 236
HinfI GANTC 3 cut(s) 17, 170, 340
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 72, 184
Hpy188III TCNNGA 3 cut(s) 21, 233, 322
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 67, 384
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 5 cut(s) 4, 10, 43, 214, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 3 cut(s) 133, 148, 236
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 8 cut(s) 6, 20, 97, 294, 307, 315, 357, 392
Lsp1109I GCAGC 2 cut(s) 22, 209
MboII GAAGA 1 cut(s) 376
MluCI AATT 4 cut(s) 203, 209, 242, 351
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 270, 330
MseI TTAA 2 cut(s) 152, 240
MspA1I CMGCKG 2 cut(s) 13, 106
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 302, 303
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 302, 303
NcoI CCATGG 1 cut(s) 129
NlaIII CATG 3 cut(s) 133, 148, 236
NlaIV GGNNCC 2 cut(s) 300, 306
PagI TCATGA 1 cut(s) 232
PaqCI CACCTGC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 170, 340
PkrI GCNGC 3 cut(s) 12, 108, 224
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 305
PshAI GACNNNNGTC 2 cut(s) 161, 303
Psp5II RGGWCCY 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 300, 306
PspPI GGNCC 2 cut(s) 298, 305
PspPPI RGGWCCY 1 cut(s) 305
PstI CTGCAG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 13
SaqAI TTAA 2 cut(s) 152, 240
SatI GCNGC 3 cut(s) 11, 107, 223
Sau96I GGNCC 2 cut(s) 298, 305
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 302, 303
SetI ASST 7 cut(s) 9, 15, 63, 116, 165, 278, 363
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 2 cut(s) 298, 305
SmaI CCCGGG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 4 cut(s) 203, 209, 242, 351
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 300, 301
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 57
TaqII GACCGA 1 cut(s) 168
TasI AATT 4 cut(s) 203, 209, 242, 351
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 2 cut(s) 170, 340
Tru1I TTAA 2 cut(s) 152, 240
Tru9I TTAA 2 cut(s) 152, 240
TscAI CASTG 1 cut(s) 96
TseI GCWGC 2 cut(s) 10, 222
TspMI CCCGGG 1 cut(s) 301
TspRI CASTG 1 cut(s) 96
Vha464I CTTAAG 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 298, 305
XagI CCTNNNNNAGG 1 cut(s) 285
XmaI CCCGGG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.