RchiOBHm_Chr7g0208071

Purine nucleobase transmembrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010694
Physical Location & Seq
Forward (+)
25457727 .. 25458089
363 bp
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UTR
Exon/CDS
Intron
PRQ18620

Sequence Viewer

Length: 363 bp
ATGGTGGGCCACGGGCCACGTTTGTCGCTGTTTAACACAAACTCCGGCCTAAACTCTTCTGGTAACCGACTGGAATCAACTAATTACAAGTGGTGGCTTCGTGTGACCATCTATACCGTCTTTCTTCTCACCAACCAACCAGTTCTTCTTCCTCTCCTTTGTTTCTTTTCATCAACAACCACATTGACTACAAACTCTATTGGTAGTACTACTTCATCATCTGCTTCCAAACTACCAAAACTCACAACAATGGTATTCCTCTACATTGCCCTTGGCTTGCTTTTGACGGCAGACAACATGATGTACTCTTACGGGCTTCTCTTTCTCCCCGTCTCTACTTACTCTTTACTATGTGCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

120

Amino Acids

13.19

Weight (kDa)

9.34

Isoelectric Point (pI)

18.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 42 - 120 1.7e-11 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 208, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
Alw26I GTCTC 1 cut(s) 337
AoxI GGCC 3 cut(s) 7, 14, 46
AspS9I GGNCC 2 cut(s) 7, 14
AsuHPI GGTGA 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 196, 228
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 337
BmcAI AGTACT 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 7, 14
BsaJI CCNNGG 2 cut(s) 10, 271
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 2 cut(s) 75, 140
Bse3DI GCAATG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 10, 271
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 75, 140
BshFI GGCC 3 cut(s) 9, 16, 48
BsiSI CCGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 337
BsmBI CGTCTC 1 cut(s) 337
BsnI GGCC 3 cut(s) 9, 16, 48
BspANI GGCC 3 cut(s) 9, 16, 48
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 75, 140
BssECI CCNNGG 2 cut(s) 10, 271
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 10
BstEII GGTNACC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 9, 16, 48
BtgI CCRYGG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 7, 14
Csp6I GTAC 2 cut(s) 207, 304
CviAII CATG 1 cut(s) 298
CviJI RGCY 6 cut(s) 9, 16, 48, 97, 276, 316
CviKI_1 RGCY 6 cut(s) 9, 16, 48, 97, 276, 316
CviQI GTAC 2 cut(s) 207, 304
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 1 cut(s) 301
FaiI YATR 3 cut(s) 114, 299, 352
FatI CATG 1 cut(s) 297
HaeIII GGCC 3 cut(s) 9, 16, 48
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 301
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 1 cut(s) 301
LpnPI CCDG 4 cut(s) 45, 56, 58, 153
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 62, 103
MboII GAAGA 4 cut(s) 48, 116, 137, 140
MluCI AATT 1 cut(s) 82
MnlI CCTC 2 cut(s) 162, 269
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 7, 14
RsaI GTAC 2 cut(s) 208, 305
RsaNI GTAC 2 cut(s) 207, 304
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 33
Sau96I GGNCC 2 cut(s) 7, 14
ScaI AGTACT 1 cut(s) 208
SetI ASST 2 cut(s) 22, 362
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 1 cut(s) 82
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 22
TasI AATT 1 cut(s) 82
TatI WGTACW 2 cut(s) 206, 303
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 159, 204
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.