Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007496

Physical Location & Seq

Genomic Coordinates Forward (+)

25670268 .. 25672056

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1119900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGTACATTGCGCTCTACATGTGAAATTGTTGAATCAAGAGAAGAGCTCCACTCGGAGTCCAAAATGGACGAGAAAGGTGGAAAACACAGCATGCTAAAATTAGGAAATAAATATTCAATCGAGGATGATATTAATCAGCTTTTTCAGGCAATTGATGGTAGAAAGTCTGCTAGGATATCAGGTCTGTCGCATGAGGCTAGCAAAGATGCTTTGAGGAAGAGTGCTATGAAAAGGCCAATGAGAGTTGGTTCATCAAATACATCAGGTATCGGAATTTCAGAGCCTGTGAGTTTGAAGCAAGCACTTAGAGGATTGTGCATCACTCAGGCATCAGAGTTGGCTGCCATGAAGCGGCTACCGAGGCCAGGTCGTTCATCAGGAGTTTCAGAAGCAGGAACTATCAAAAGGTTGTATGGCACAGTGGTAGCCGAGGCTAACGGGCCTGGCCTACCTATGACTGAAGGTAAAGGGAATTATGTAGAGGTGTCCCTTGTGCCTGAAACATCCAAAAATTCTGAAAACAATCCTGGATCCATGCAATCAGAGACACAGGTTGATACTGCCAGAACTTTGGGAGCTGGACTGATGCCCGATGCTAGGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

204

Amino Acids

21.82

Weight (kDa)

9.42

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007496)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24340 FvH4_3g24340 FvH4_3g24340
malus_domestica	MD00G1119900.v1.1 MD11G1159800.v1.1
prunus_persica	Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1
pyrus_communis	pycom03g09340 pycom11g13040
rosa_chinensis	RchiOBHm_Chr5g0043841
rosa_laevigata	RLG00000034218
rosa_multiflora	Rmu_sc0004170.1_g000003 Rmu_sc0008441.1_g000017 Rmu_sc0020133.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037210
rosa_rugosa	Rorug05G0208600 Rorug05G0208700 Rorug05G0208800
rosa_samantha	Rh5AG292700 Rh5BG300800 Rh5CG328400 Rh5DG309700
rosa_wichuraiana	Rw5G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	528, 541
AcsI	RAATTY	2 cut(s)	276, 514
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	354, 368, 600
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	35, 120, 298
AjnI	CCWGG	3 cut(s)	367, 445, 529
AluBI	AGCT	3 cut(s)	49, 142, 581
AluI	AGCT	3 cut(s)	49, 142, 581
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	528, 541
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	4 cut(s)	236, 365, 443, 448
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	276, 514
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	3 cut(s)	369, 447, 531
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	3 cut(s)	174, 201, 600
BisI	GCNGC	2 cut(s)	345, 356
BlsI	GCNGC	2 cut(s)	346, 357
Bme1390I	CCNGG	3 cut(s)	369, 447, 531
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	3 cut(s)	369, 447, 531
BmsI	GCATC	5 cut(s)	199, 330, 341, 579, 586
BmtI	GCTAGC	1 cut(s)	204
BplI	GAGNNNNNCTC	4 cut(s)	33, 65, 38, 70
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	362, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 368, 600
Bse3DI	GCAATG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	369, 447, 531
BseDI	CCNNGG	2 cut(s)	362, 432
BseGI	GGATG	2 cut(s)	133, 506
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	354, 368, 600
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	238, 367, 445, 450
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	354, 368, 600
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	4 cut(s)	238, 367, 445, 450
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	533
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	4 cut(s)	238, 367, 445, 450
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	528, 541
BspQI	GCTCTTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	362, 432
BssMI	GATC	1 cut(s)	533
Bst2UI	CCWGG	3 cut(s)	369, 447, 531
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	2 cut(s)	39, 215
BstC8I	GCNNGC	3 cut(s)	95, 202, 303
BstDEI	CTNAG	2 cut(s)	308, 327
BstF5I	GGATG	2 cut(s)	133, 506
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	3 cut(s)	369, 447, 531
BstNSI	RCATGY	2 cut(s)	24, 97
BstSCI	CCNGG	3 cut(s)	367, 445, 529
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	4 cut(s)	238, 367, 445, 450
BtsCI	GGATG	2 cut(s)	133, 506
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	3 cut(s)	95, 202, 303
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	5 cut(s)	21, 94, 194, 349, 538
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	308, 327
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
Eam1104I	CTCTTC	2 cut(s)	39, 215
EarI	CTCTTC	2 cut(s)	39, 215
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	367, 445, 529
EcoRV	GATATC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	5 cut(s)	24, 97, 197, 352, 541
FaiI	YATR	9 cut(s)	22, 95, 195, 230, 350, 417, 458, 480, 539
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	5 cut(s)	20, 93, 193, 348, 537
Fnu4HI	GCNGC	2 cut(s)	345, 356
FokI	GGATG	2 cut(s)	140, 493
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	345, 356
FspBI	CTAG	3 cut(s)	174, 201, 600
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	345, 356
HaeIII	GGCC	4 cut(s)	238, 367, 445, 450
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	24, 97, 197, 352, 541
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	35, 59
Hpy188I	TCNGA	7 cut(s)	58, 275, 283, 337, 391, 520, 547
Hpy188III	TCNNGA	2 cut(s)	39, 381
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	2 cut(s)	321, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	308, 327
Hsp92II	CATG	5 cut(s)	24, 97, 197, 352, 541
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	533
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	54, 578
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	5 cut(s)	199, 330, 341, 579, 586
MaeI	CTAG	3 cut(s)	174, 201, 600
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	2 cut(s)	56, 232
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	6 cut(s)	27, 101, 153, 276, 475, 514
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	7 cut(s)	118, 190, 210, 305, 357, 427, 478
MseI	TTAA	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	369, 447, 531
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	3 cut(s)	369, 447, 531
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	1 cut(s)	533
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	5 cut(s)	24, 97, 197, 352, 541
NlaIV	GGNNCC	1 cut(s)	535
NmeAIII	GCCGAG	1 cut(s)	457
NspI	RCATGY	2 cut(s)	24, 97
PaeI	GCATGC	1 cut(s)	97
PciI	ACATGT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	346, 357
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	20
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	367, 445, 529
PspGI	CCWGG	3 cut(s)	367, 445, 529
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	345, 356
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	369, 447, 531
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	5 cut(s)	199, 330, 341, 579, 586
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	6 cut(s)	27, 101, 153, 276, 475, 514
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	116
SspMI	CTAG	3 cut(s)	174, 201, 600
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	367, 445, 529
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	123
TasI	AATT	6 cut(s)	27, 101, 153, 276, 475, 514
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	243, 245, 365, 366
TspRI	CASTG	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	2 cut(s)	276, 514
XceI	RCATGY	2 cut(s)	24, 97
XspI	CTAG	3 cut(s)	174, 201, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.