Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007496

Physical Location & Seq

Genomic Coordinates Forward (+)

20817309 .. 20818712

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0208800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATGCTTTGTGGGAACTAGAAGATAAGTGGAAGCTGTCTACCCAACAAGCATTTCTTCTCTTGGTGTCTGCCGGCTTTGCCGTTATCGGTCTCTGCATGGCTATGACTGTGCTAAGAAAGAAGGCTCAGAGAAAGCACCAACAGCAGCAGCTTGTGGTGATGGGACAAGAGGAGACTAATGGGGCATTAGGGTACAAGTGGTCAGAGCCAAGCTGCGGTTGGGGCTCGATAAAGAGGGCGTTGGTGGGCTCGGTGCGGTGGAGTAAGGCGAGCAAGTGGGGGGAGGAGAGAAGAGGAGGGAGCTGGAGGGAGATGACACCGGCGGGGCGGCTGCTGGAGAAGAGGATTGGGGTGGAAGGGGGGTGGCATAGCCATAACTCGGAGTCACCTGTTTGGCAAAGGCCTATACTTATGGGGGAGAAGTGTGAGCTACCGAGGTTTAGTGGCCTTATTCTATATGATGAGAGAGGCCGGCCTCTTTATGATTCCCACCAGGAAACTAGAATCCAGGAAAAAACGGCTCCTGTTGCGAGAACGACTCTGAGGGACTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

186

Amino Acids

21.22

Weight (kDa)

9.51

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007496)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24340 FvH4_3g24340 FvH4_3g24340
malus_domestica	MD00G1119900.v1.1 MD11G1159800.v1.1
prunus_persica	Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1
pyrus_communis	pycom03g09340 pycom11g13040
rosa_chinensis	RchiOBHm_Chr5g0043841
rosa_laevigata	RLG00000034218
rosa_multiflora	Rmu_sc0004170.1_g000003 Rmu_sc0008441.1_g000017 Rmu_sc0020133.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037210
rosa_rugosa	Rorug05G0208600 Rorug05G0208700 Rorug05G0208800
rosa_samantha	Rh5AG292700 Rh5BG300800 Rh5CG328400 Rh5DG309700
rosa_wichuraiana	Rw5G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	4 cut(s)	219, 259, 326, 331
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	218, 382
AjnI	CCWGG	2 cut(s)	495, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	5 cut(s)	37, 154, 216, 306, 433
AluI	AGCT	5 cut(s)	37, 154, 216, 306, 433
Alw26I	GTCTC	2 cut(s)	98, 170
AoxI	GGCC	4 cut(s)	404, 448, 472, 476
ApeKI	GCWGC	4 cut(s)	148, 151, 216, 334
AsuHPI	GGTGA	2 cut(s)	172, 381
BanII	GRGCYC	2 cut(s)	230, 254
BbvI	GCAGC	4 cut(s)	160, 163, 203, 321
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	68, 537
BciT130I	CCWGG	2 cut(s)	497, 512
BcoDI	GTCTC	2 cut(s)	98, 170
BfaI	CTAG	2 cut(s)	20, 504
BisI	GCNGC	5 cut(s)	149, 152, 217, 332, 335
BlsI	GCNGC	5 cut(s)	150, 153, 218, 333, 336
Bme1390I	CCNGG	2 cut(s)	497, 512
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	497, 512
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpmI	CTGGAG	2 cut(s)	328, 359
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 382
Bse118I	RCCGGY	3 cut(s)	74, 322, 474
BseBI	CCWGG	2 cut(s)	497, 512
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	218, 382
BseMII	CTCAG	2 cut(s)	143, 536
BseRI	GAGGAG	3 cut(s)	188, 302, 312
BseXI	GCAGC	4 cut(s)	160, 163, 203, 321
BshFI	GGCC	4 cut(s)	406, 450, 474, 478
BsiSI	CCGG	3 cut(s)	75, 323, 475
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	218, 382
BsmAI	GTCTC	2 cut(s)	98, 170
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	4 cut(s)	406, 450, 474, 478
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	230, 254
BspACI	CCGC	4 cut(s)	219, 259, 326, 331
BspANI	GGCC	4 cut(s)	406, 450, 474, 478
BspCNI	CTCAG	2 cut(s)	142, 537
BspLI	GGNNCC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	98
BsrFI	RCCGGY	3 cut(s)	74, 322, 474
BssAI	RCCGGY	3 cut(s)	74, 322, 474
BssECI	CCNNGG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	497, 512
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	289, 338
BstC8I	GCNNGC	3 cut(s)	76, 274, 476
BstDEI	CTNAG	3 cut(s)	116, 129, 545
BstF5I	GGATG	1 cut(s)	10
BstMAI	GTCTC	2 cut(s)	98, 170
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 145, 225, 530
BstNI	CCWGG	2 cut(s)	497, 512
BstSCI	CCNGG	2 cut(s)	495, 510
BstV1I	GCAGC	4 cut(s)	160, 163, 203, 321
BsuRI	GGCC	4 cut(s)	406, 450, 474, 478
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	76, 274, 476
Cfr10I	RCCGGY	3 cut(s)	74, 322, 474
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	116, 129, 545
Eam1104I	CTCTTC	2 cut(s)	289, 338
EarI	CTCTTC	2 cut(s)	289, 338
Eco147I	AGGCCT	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	230, 254
Eco31I	GGTCTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	495, 510
EcoT38I	GRGCYC	2 cut(s)	230, 254
FaeI	CATG	1 cut(s)	103
FaiI	YATR	9 cut(s)	101, 107, 372, 378, 410, 416, 460, 462, 486
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	5 cut(s)	149, 152, 217, 332, 335
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	230, 254
FseI	GGCCGGCC	1 cut(s)	478
Fsp4HI	GCNGC	5 cut(s)	149, 152, 217, 332, 335
FspBI	CTAG	2 cut(s)	20, 504
GluI	GCNGC	5 cut(s)	149, 152, 217, 332, 335
GsuI	CTGGAG	2 cut(s)	328, 359
HaeIII	GGCC	4 cut(s)	406, 450, 474, 478
HapII	CCGG	3 cut(s)	75, 323, 475
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	4 cut(s)	386, 488, 507, 541
HpaII	CCGG	3 cut(s)	75, 323, 475
HphI	GGTGA	2 cut(s)	172, 381
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	132, 208, 385, 546
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	118, 353
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 145, 225, 530
HpyF3I	CTNAG	3 cut(s)	116, 129, 545
Hsp92II	CATG	1 cut(s)	103
KroI	GCCGGC	2 cut(s)	74, 474
KroNI	GCCGGC	2 cut(s)	76, 476
LmnI	GCTCC	2 cut(s)	303, 529
Lsp1109I	GCAGC	4 cut(s)	160, 163, 203, 321
MaeI	CTAG	2 cut(s)	20, 504
MaeIII	GTNAC	1 cut(s)	387
MboII	GAAGA	4 cut(s)	35, 50, 306, 355
MhlI	GDGCHC	2 cut(s)	230, 254
MlyI	GAGTC	2 cut(s)	395, 535
MroNI	GCCGGC	2 cut(s)	74, 474
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	3 cut(s)	75, 323, 475
MspR9I	CCNGG	2 cut(s)	497, 512
MvaI	CCWGG	2 cut(s)	497, 512
MwoI	GCNNNNNNNGC	4 cut(s)	80, 145, 225, 530
NaeI	GCCGGC	2 cut(s)	76, 476
NgoMIV	GCCGGC	2 cut(s)	74, 474
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	406
PdiI	GCCGGC	2 cut(s)	76, 476
PfeI	GAWTC	2 cut(s)	488, 507
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	5 cut(s)	150, 153, 218, 333, 336
PleI	GAGTC	2 cut(s)	394, 535
PpsI	GAGTC	2 cut(s)	394, 535
Psp6I	CCWGG	2 cut(s)	495, 510
PspGI	CCWGG	2 cut(s)	495, 510
PspN4I	GGNNCC	1 cut(s)	525
RigI	GGCCGGCC	1 cut(s)	478
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	104
SatI	GCNGC	5 cut(s)	149, 152, 217, 332, 335
SchI	GAGTC	2 cut(s)	395, 535
ScrFI	CCNGG	2 cut(s)	497, 512
SduI	GDGCHC	2 cut(s)	230, 254
SetI	ASST	7 cut(s)	39, 156, 218, 308, 394, 435, 443
SgrAI	CRCCGGYG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	4 cut(s)	219, 259, 326, 331
SspMI	CTAG	2 cut(s)	20, 504
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	495, 510
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	230
TaqII	GACCGA	1 cut(s)	80
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	488, 507
TseFI	GTSAC	1 cut(s)	387
TseI	GCWGC	4 cut(s)	148, 151, 216, 334
Tsp45I	GTSAC	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	2 cut(s)	20, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.