Rorug05G0208700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007496
Physical Location & Seq
Reverse (-)
20809375 .. 20811008
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0208700.1

Sequence Viewer

Length: 1413 bp
ATGGCAAATCCAAATCCAAATCCAAACCCAGTGAAAGTAGTTGAGGTTTGCAGAGTAGCTCCACAACCGGCCTCAGCCTCTATGTCACTTCCTCTAACCTTCTTTGATCTACTTTGGCTGAGGTTTGAACCCTTCCAACGCCTTTTCTTTTATGAAGCCTCTAACACAGCACTCTTCTTCAAATCCATACTTCCAAGGCTCAAAACCTCCCTCTCACTCACTCTTCACCACTTTTCACCTCTCGCCGGAAACCTCACCTGGCCTGAAGACTCCCCTAAGCCAATTCTCAGCTATGTCAAAGGCAACACCGTTTCGCTCACAATAGCCGAGTACTACTCTAATGATGATGATGCTGGTCGTGATCATTTCCATCGTCTTTCGAGCAGCGACTTCCTTGAAGCAAAAGAATACTATTCTCTTGTGCCCCAACTGGATGTGTCTGACGATCGAGCCACGGCGCTGGCACTACAAATCACTCTCTTTCCGAATCGGGGGTTTTCGATTGGAACAGCCATGCACCATGCAGTCCTTGATGGCAATTCTTTAACCTTGTTTTTCAAATTGTGGGCTCACATATGCAGGCATCATGAACAACTTGCAACCTCCTCGTCTTTGTTAGCGGATGACCTAAAACCGTGTTACACTGATAGATTGGTCATCGAGGACCCATTGGGGCTCGAAGCAATCTATTCGAAGCAATGGCTCGACATGGGCGAGCCTAACAACCGAAGCTTAAAGGTTTGGGAAATTAAATCTCCACCAGGCTCGATTAGAGCTACCTTTGAATTCACAAAAGCAAAAATACAAACACTTGGGCAGCATGTGAAGACTGTAATGAATTCTGATTCACTTCATTTGTCAGCGTTTGCTCTAACATGTGCCTATACTTGGGTTTGCTTAGTCAAGGCAGAAGAAACCAAATGTGAGAAAGTATTTATATACCTCAGCGCCGACTACAGGTCTCGCTTAGATCCTCCTATATCTGCTAATTACTTTGGAAATTGCACCGGGGGCTGTGCAGCAGTTGCAGAAACAAAAGGGCTACTAGGGGAAGATGGGTTCGTTGTGGCTTTAAAGGCAATTAGTGAAGCTATTATGGGTTTGAAAAATGAGGGAGTACTTCTCGATGGGGCTGAGAGTTGGCTTTCGAAGTTGTGTACTGTGCAAGGTAGTGATAGGATTTTTTCGACTGCTGGCTCGCCTCGGTTTGGGATTTATGAGACTGATTTTGGATGGGGAAGACCAAAGAGGACTGAGGTGCTTACCATAGACAAGACAGGATCTATCTCTTTTTCAGATAGCAAGAATGGTGGTGGAGGCGTTGAGGTTGGGCTGGTTTTGGAAGAGCATCTTATGGGAGTTTTTGCTTCTCTATTTGCCAAGGGTCTTATTCATACACCTTTGACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

470

Amino Acids

51.85

Weight (kDa)

5.92

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 457 7.9e-43 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 620
AclWI GGATC 2 cut(s) 965, 1288
AcsI RAATTY 2 cut(s) 785, 838
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 3 cut(s) 332, 1119, 1159
AfiI CCNNNNNNNGG 5 cut(s) 245, 491, 888, 957, 1208
AflIII ACRYGT 1 cut(s) 875
AgsI TTSAA 6 cut(s) 128, 181, 398, 559, 785, 1105
AhdI GACNNNNNGTC 1 cut(s) 958
AjnI CCWGG 2 cut(s) 257, 760
AloI GAACNNNNNNTCC 2 cut(s) 1043, 1075
AluBI AGCT 5 cut(s) 59, 291, 732, 776, 1091
AluI AGCT 5 cut(s) 59, 291, 732, 776, 1091
Alw26I GTCTC 2 cut(s) 966, 1214
AlwI GGATC 2 cut(s) 965, 1288
AoxI GGCC 2 cut(s) 69, 260
ApeKI GCWGC 3 cut(s) 384, 817, 1019
ApoI RAATTY 2 cut(s) 785, 838
AspLEI GCGC 2 cut(s) 460, 950
AspS9I GGNCC 1 cut(s) 664
AsuC2I CCSGG 1 cut(s) 1009
AsuHPI GGTGA 3 cut(s) 218, 228, 247
AsuII TTCGAA 2 cut(s) 692, 1148
AvaII GGWCC 1 cut(s) 664
BaeGI GKGCMC 1 cut(s) 426
BanII GRGCYC 2 cut(s) 571, 678
BbsI GAAGAC 3 cut(s) 273, 833, 1246
BbvCI CCTCAGC 3 cut(s) 73, 119, 944
BbvI GCAGC 3 cut(s) 396, 829, 1031
BccI CCATC 5 cut(s) 378, 527, 1049, 1121, 1227
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 4 cut(s) 588, 622, 672, 706
BciT130I CCWGG 2 cut(s) 259, 762
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 1009
BcoDI GTCTC 2 cut(s) 966, 1214
BfaI CTAG 1 cut(s) 1046
BfmI CTRYAG 1 cut(s) 955
BfoI RGCGCY 2 cut(s) 461, 951
BisI GCNGC 3 cut(s) 385, 818, 1020
BlsI GCNGC 3 cut(s) 386, 819, 1021
BmcAI AGTACT 2 cut(s) 332, 1119
Bme1390I CCNGG 3 cut(s) 259, 762, 1009
Bme18I GGWCC 1 cut(s) 664
BmeRI GACNNNNNGTC 1 cut(s) 958
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 666
BmrFI CCNGG 3 cut(s) 259, 762, 1009
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 340, 592, 1357
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 3 cut(s) 273, 833, 1246
BplI GAGNNNNNCTC 4 cut(s) 320, 352, 1107, 1139
Bpu10I CCTNAGC 4 cut(s) 73, 119, 276, 944
Bpu14I TTCGAA 2 cut(s) 692, 1148
BpuMI CCSGG 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 966
BsaJI CCNNGG 5 cut(s) 194, 453, 1008, 1202, 1380
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 491, 888, 957, 1208
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 29, 435
Bse3DI GCAATG 1 cut(s) 704
BseBI CCWGG 2 cut(s) 259, 762
BseDI CCNNGG 5 cut(s) 194, 453, 1008, 1202, 1380
BseGI GGATG 3 cut(s) 439, 628, 1238
BseLI CCNNNNNNNGG 5 cut(s) 245, 491, 888, 957, 1208
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 6 cut(s) 87, 110, 301, 958, 1125, 1245
BseNI ACTGG 2 cut(s) 29, 435
BseRI GAGGAG 1 cut(s) 595
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 3 cut(s) 396, 829, 1031
BsgI GTGCAG 1 cut(s) 1038
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 71, 262
BsiEI CGRYCG 1 cut(s) 448
BsiSI CCGG 3 cut(s) 68, 246, 1008
BslI CCNNNNNNNGG 5 cut(s) 245, 491, 888, 957, 1208
BsmAI GTCTC 2 cut(s) 966, 1214
BsnI GGCC 2 cut(s) 71, 262
Bso31I GGTCTC 1 cut(s) 966
Bsp119I TTCGAA 2 cut(s) 692, 1148
Bsp1286I GDGCHC 3 cut(s) 426, 571, 678
Bsp143I GATC 5 cut(s) 106, 361, 445, 970, 1280
BspACI CCGC 1 cut(s) 620
BspANI GGCC 2 cut(s) 71, 262
BspCNI CTCAG 6 cut(s) 86, 111, 300, 957, 1126, 1246
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 666
BspPI GGATC 2 cut(s) 965, 1288
BspQI GCTCTTC 1 cut(s) 1338
BspT104I TTCGAA 2 cut(s) 692, 1148
BspTNI GGTCTC 1 cut(s) 966
BsrDI GCAATG 1 cut(s) 704
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 29, 435
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 5 cut(s) 194, 453, 1008, 1202, 1380
BssMI GATC 5 cut(s) 106, 361, 445, 970, 1280
BssT1I CCWWGG 2 cut(s) 194, 1380
Bst2UI CCWGG 2 cut(s) 259, 762
Bst4CI ACNGT 4 cut(s) 310, 636, 832, 1162
Bst6I CTCTTC 3 cut(s) 179, 228, 1338
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstBI TTCGAA 2 cut(s) 692, 1148
BstC8I GCNNGC 5 cut(s) 462, 581, 716, 1195, 1199
BstDEI CTNAG 9 cut(s) 73, 119, 276, 287, 898, 944, 967, 1134, 1254
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 439, 628, 1238
BstH2I RGCGCY 2 cut(s) 461, 951
BstHHI GCGC 2 cut(s) 460, 950
BstKTI GATC 5 cut(s) 109, 364, 448, 973, 1283
BstMAI GTCTC 2 cut(s) 966, 1214
BstMBI GATC 5 cut(s) 106, 361, 445, 970, 1280
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 1011, 1025, 1076
BstNI CCWGG 2 cut(s) 259, 762
BstNSI RCATGY 2 cut(s) 824, 879
BstSCI CCNGG 3 cut(s) 257, 760, 1007
BstSFI CTRYAG 1 cut(s) 955
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 396, 829, 1031
BstV2I GAAGAC 3 cut(s) 273, 833, 1246
BstX2I RGATCY 2 cut(s) 970, 1280
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 970, 1280
BsuRI GGCC 2 cut(s) 71, 262
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 439, 628, 1238
BtsIMutI CAGTG 2 cut(s) 36, 642
Cac8I GCNNGC 5 cut(s) 462, 581, 716, 1195, 1199
CciI TCATGA 1 cut(s) 586
CfoI GCGC 2 cut(s) 460, 950
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 664
Csp6I GTAC 3 cut(s) 331, 1118, 1158
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 6 cut(s) 514, 521, 587, 709, 821, 876
CviQI GTAC 3 cut(s) 331, 1118, 1158
DdeI CTNAG 9 cut(s) 73, 119, 276, 287, 898, 944, 967, 1134, 1254
DpnI GATC 5 cut(s) 108, 363, 447, 972, 1282
DpnII GATC 5 cut(s) 106, 361, 445, 970, 1280
DraI TTTAAA 1 cut(s) 1074
DriI GACNNNNNGTC 1 cut(s) 958
Eam1104I CTCTTC 3 cut(s) 179, 228, 1338
Eam1105I GACNNNNNGTC 1 cut(s) 958
EarI CTCTTC 3 cut(s) 179, 228, 1338
Eco130I CCWWGG 2 cut(s) 194, 1380
Eco24I GRGCYC 2 cut(s) 571, 678
Eco31I GGTCTC 1 cut(s) 966
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 664
EcoRI GAATTC 2 cut(s) 785, 838
EcoRII CCWGG 2 cut(s) 257, 760
EcoT14I CCWWGG 2 cut(s) 194, 1380
EcoT38I GRGCYC 2 cut(s) 571, 678
ErhI CCWWGG 2 cut(s) 194, 1380
FaeI CATG 6 cut(s) 517, 524, 590, 712, 824, 879
FalI AAGNNNNNCTT 2 cut(s) 1335, 1367
FatI CATG 6 cut(s) 513, 520, 586, 708, 820, 875
FauNDI CATATG 1 cut(s) 575
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 385, 818, 1020
FokI GGATG 3 cut(s) 446, 635, 1245
FriOI GRGCYC 2 cut(s) 571, 678
Fsp4HI GCNGC 3 cut(s) 385, 818, 1020
FspBI CTAG 1 cut(s) 1046
GlaI GCGC 2 cut(s) 459, 949
GluI GCNGC 3 cut(s) 385, 818, 1020
HaeII RGCGCY 2 cut(s) 461, 951
HaeIII GGCC 2 cut(s) 71, 262
HapII CCGG 3 cut(s) 68, 246, 1008
HhaI GCGC 2 cut(s) 460, 950
Hin1II CATG 6 cut(s) 517, 524, 590, 712, 824, 879
Hin6I GCGC 2 cut(s) 458, 948
HinP1I GCGC 2 cut(s) 458, 948
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 3 cut(s) 269, 487, 845
HpaII CCGG 3 cut(s) 68, 246, 1008
HphI GGTGA 3 cut(s) 218, 228, 247
Hpy166II GTNNAC 1 cut(s) 1158
Hpy188I TCNGA 4 cut(s) 442, 486, 844, 1297
Hpy188III TCNNGA 3 cut(s) 359, 587, 1124
Hpy8I GTNNAC 1 cut(s) 1158
HpyAV CCTTC 2 cut(s) 109, 142
HpyCH4III ACNGT 4 cut(s) 310, 636, 832, 1162
HpyCH4V TGCA 9 cut(s) 51, 517, 524, 579, 599, 1005, 1019, 1028, 1165
HpyF10VI GCNNNNNNNGC 3 cut(s) 1011, 1025, 1076
HpyF3I CTNAG 9 cut(s) 73, 119, 276, 287, 898, 944, 967, 1134, 1254
Hsp92II CATG 6 cut(s) 517, 524, 590, 712, 824, 879
HspAI GCGC 2 cut(s) 458, 948
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 106, 361, 445, 970, 1280
LguI GCTCTTC 1 cut(s) 1338
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 3 cut(s) 396, 829, 1031
LweI GCATC 3 cut(s) 340, 592, 1357
MaeI CTAG 1 cut(s) 1046
MaeIII GTNAC 2 cut(s) 84, 638
MalI GATC 5 cut(s) 108, 363, 447, 972, 1282
MboI GATC 5 cut(s) 106, 361, 445, 970, 1280
MboII GAAGA 9 cut(s) 166, 169, 215, 278, 838, 923, 1064, 1251, 1355
MflI RGATCY 2 cut(s) 970, 1280
MhlI GDGCHC 3 cut(s) 426, 571, 678
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 160
MseI TTAA 5 cut(s) 545, 734, 750, 1073, 1411
MspI CCGG 3 cut(s) 68, 246, 1008
MspR9I CCNGG 3 cut(s) 259, 762, 1009
MvaI CCWGG 2 cut(s) 259, 762
MwoI GCNNNNNNNGC 3 cut(s) 1011, 1025, 1076
NciI CCSGG 1 cut(s) 1009
NdeI CATATG 1 cut(s) 575
NdeII GATC 5 cut(s) 106, 361, 445, 970, 1280
NlaIII CATG 6 cut(s) 517, 524, 590, 712, 824, 879
NlaIV GGNNCC 1 cut(s) 666
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 84
NspI RCATGY 2 cut(s) 824, 879
NspV TTCGAA 2 cut(s) 692, 1148
PagI TCATGA 1 cut(s) 586
PciI ACATGT 1 cut(s) 875
PciSI GCTCTTC 1 cut(s) 1338
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PfeI GAWTC 2 cut(s) 487, 845
PkrI GCNGC 3 cut(s) 386, 819, 1021
Ple19I CGATCG 1 cut(s) 448
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 664
PscI ACATGT 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 257, 760
PspGI CCWGG 2 cut(s) 257, 760
PspN4I GGNNCC 1 cut(s) 666
PspPI GGNCC 1 cut(s) 664
PspPPI RGGWCCY 1 cut(s) 664
PsuI RGATCY 2 cut(s) 970, 1280
PvuI CGATCG 1 cut(s) 448
RsaI GTAC 3 cut(s) 332, 1119, 1159
RsaNI GTAC 3 cut(s) 331, 1118, 1158
SapI GCTCTTC 1 cut(s) 1338
SaqAI TTAA 5 cut(s) 545, 734, 750, 1073, 1411
SatI GCNGC 3 cut(s) 385, 818, 1020
Sau3AI GATC 5 cut(s) 106, 361, 445, 970, 1280
Sau96I GGNCC 1 cut(s) 664
ScaI AGTACT 2 cut(s) 332, 1119
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 259, 762, 1009
SduI GDGCHC 3 cut(s) 426, 571, 678
SfaNI GCATC 3 cut(s) 340, 592, 1357
SfcI CTRYAG 1 cut(s) 955
SfuI TTCGAA 2 cut(s) 692, 1148
SinI GGWCC 1 cut(s) 664
SsiI CCGC 1 cut(s) 620
SspMI CTAG 1 cut(s) 1046
StyD4I CCNGG 3 cut(s) 257, 760, 1007
StyI CCWWGG 2 cut(s) 194, 1380
TaaI ACNGT 4 cut(s) 310, 636, 832, 1162
TatI WGTACW 3 cut(s) 330, 1117, 1157
TfiI GAWTC 2 cut(s) 487, 845
Tru1I TTAA 5 cut(s) 545, 734, 750, 1073, 1411
Tru9I TTAA 5 cut(s) 545, 734, 750, 1073, 1411
TscAI CASTG 2 cut(s) 36, 649
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 3 cut(s) 384, 817, 1019
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 5 cut(s) 168, 603, 842, 851, 1382
TspRI CASTG 2 cut(s) 36, 649
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 2 cut(s) 785, 838
XceI RCATGY 2 cut(s) 824, 879
XspI CTAG 1 cut(s) 1046
ZrmI AGTACT 2 cut(s) 332, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.