Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020133.1

Orthogroup ID

OG0007496

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 603

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020133.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 602 bp

atgaatgaaggtaaagggaattttgtagagatctccttagtaccagatgcatcaaatagctctcagcagatgcctggattcatgcaatcagagccgcagtttcatccagccacaacttcagctgatgcaatgatgaccaaattagcaccacagaaactaatttcttcttcgccaacagcagttcagagtaagatattaaagggagaagatggaaaactggaagatgcagatacttcatcaagcaaaaaagtcatgcaggtggaggttccaatcactactctaaattcgtacaagggtcagcactctgcttcttctctatctggcagtaagttaaggaaatcttctggcagtgattcacatttaatcaagccggtcctcaggagcaagaactttgttacaaaaaatatgaagcaggatttgagttctggttctagtagttccaaatcagataaccagatagttgataatgatttagtttctgctactagtaaattggagggtcagatgcacagtggtactcccaagcatgaaagggatggaaatacaaaaagttctctgatctccagtaatcatagtgtagaaatgaactcaagtattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

200

Amino Acids

21.33

Weight (kDa)

8.73

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007496)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24340 FvH4_3g24340 FvH4_3g24340
malus_domestica	MD00G1119900.v1.1 MD11G1159800.v1.1
prunus_persica	Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1 Prupe.6G122800_v2.0.a1
pyrus_communis	pycom03g09340 pycom11g13040
rosa_chinensis	RchiOBHm_Chr5g0043841
rosa_laevigata	RLG00000034218
rosa_multiflora	Rmu_sc0004170.1_g000003 Rmu_sc0008441.1_g000017 Rmu_sc0020133.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037210
rosa_rugosa	Rorug05G0208600 Rorug05G0208700 Rorug05G0208800
rosa_samantha	Rh5AG292700 Rh5BG300800 Rh5CG328400 Rh5DG309700
rosa_wichuraiana	Rw5G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AciI	CCGC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	19, 283
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	3 cut(s)	42, 290, 517
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	60, 122
AluI	AGCT	2 cut(s)	60, 122
ApoI	RAATTY	2 cut(s)	19, 283
AspS9I	GGNCC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	377
BccI	CCATC	2 cut(s)	203, 530
BciT130I	CCWGG	1 cut(s)	75
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	432, 486
BfuAI	ACCTGC	1 cut(s)	247
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	6 cut(s)	37, 59, 60, 115, 214, 495
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	574
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	222, 564
Bse21I	CCTNAGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	103, 541
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	77, 391
BseNI	ACTGG	2 cut(s)	222, 564
BsiSI	CCGG	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	30, 558
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	76, 390
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	222, 564
BssAI	RCCGGY	1 cut(s)	370
BssMI	GATC	2 cut(s)	30, 558
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	512
BstDEI	CTNAG	3 cut(s)	37, 63, 377
BstF5I	GGATG	2 cut(s)	103, 541
BstKTI	GATC	2 cut(s)	33, 561
BstMBI	GATC	2 cut(s)	30, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	103, 541
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	355, 517
BveI	ACCTGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	41, 289, 516
CviAII	CATG	3 cut(s)	82, 253, 527
CviJI	RGCY	5 cut(s)	60, 94, 110, 122, 370
CviKI_1	RGCY	5 cut(s)	60, 94, 110, 122, 370
CviQI	GTAC	3 cut(s)	41, 289, 516
DdeI	CTNAG	3 cut(s)	37, 63, 377
DpnI	GATC	2 cut(s)	32, 560
DpnII	GATC	2 cut(s)	30, 558
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	52
FaeI	CATG	3 cut(s)	85, 256, 530
FaiI	YATR	5 cut(s)	83, 254, 407, 528, 573
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FatI	CATG	3 cut(s)	81, 252, 526
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	90, 548
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	432, 486
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	547
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	3 cut(s)	85, 256, 530
HinfI	GANTC	2 cut(s)	78, 353
HpaII	CCGG	1 cut(s)	371
Hpy188I	TCNGA	5 cut(s)	91, 186, 448, 504, 558
Hpy188III	TCNNGA	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	6 cut(s)	50, 85, 128, 227, 256, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	3 cut(s)	37, 63, 377
Hsp92II	CATG	3 cut(s)	85, 256, 530
Kzo9I	GATC	2 cut(s)	30, 558
LmnI	GCTCC	1 cut(s)	381
LweI	GCATC	6 cut(s)	37, 59, 60, 115, 214, 495
MaeI	CTAG	2 cut(s)	432, 486
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	32, 560
MboI	GATC	2 cut(s)	30, 558
MboII	GAAGA	6 cut(s)	156, 159, 218, 233, 303, 333
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	5 cut(s)	19, 140, 159, 283, 491
MnlI	CCTC	3 cut(s)	256, 386, 490
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	3 cut(s)	197, 332, 362
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	2 cut(s)	30, 558
NlaIII	CATG	3 cut(s)	85, 256, 530
NlaIV	GGNNCC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	78, 353
PkrI	GCNGC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	3 cut(s)	42, 290, 517
RsaNI	GTAC	3 cut(s)	41, 289, 516
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	197, 332, 362
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	30, 558
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	5 cut(s)	13, 62, 124, 261, 267
SfaNI	GCATC	6 cut(s)	37, 59, 60, 115, 214, 495
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	5 cut(s)	19, 140, 159, 283, 491
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	432, 486
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	512
TasI	AATT	5 cut(s)	19, 140, 159, 283, 491
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	78, 353
Tru1I	TTAA	3 cut(s)	197, 332, 362
Tru9I	TTAA	3 cut(s)	197, 332, 362
TscAI	CASTG	2 cut(s)	355, 517
TspDTI	ATGAA	8 cut(s)	17, 21, 70, 92, 225, 422, 543, 599
TspRI	CASTG	2 cut(s)	355, 517
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	2 cut(s)	19, 283
XspI	CTAG	2 cut(s)	432, 486
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.