Rorug05G0208600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007496
Physical Location & Seq
Reverse (-)
20778651 .. 20780875
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0208600.1

Sequence Viewer

Length: 810 bp
ATGTTCCTTTGGATGACGACTGCTGAAGACTCTATTGGTCCAGAAGTAGAAAAGCTGGCGGCTTCACTTCCTGATGGTGGTGTCCTTCTTCTTGAAAATGTGAGGTTTTACAAAGAGGAGGAGAAGAACGATCCTGAGCATGCAAAGAAGCTCGCCTCTGTAGCTGATCTTTTTGTCAATGATGCATTCGGAACTGCACATAGAACCCATGCTTCAACTGAGGGTGTAACAAAATTCTTAAGGCCATCTGTAGCTGGTTTTCTTTTGCAGAAGGAACTCGACTATCTTGTTGGGGCAGTATCAAACCCAAAAAAGCCATTTGCAGCCATTGTTGGTGGTCCGAAGGTCTCATCCAAGATTGGAGTGATCGAGTCACTGTTAGAGAAGGTTGATTACTTAATTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTCACTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTACCCACTGATGTCATAATTGCAGACAAATTTGCTCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGGTGGATGGGATTGGATATTGGACCAGACTCTATTAAGACATTCAATGATGCACTTAATACCACTCAAACCATCATTTGGAACGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCAGTAGGAACAGAGGTAAGCAGTTGGCATTCATTTCTGTACATAAACATGTTCACTACTTATATAGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

269

Amino Acids

29.06

Weight (kDa)

5.19

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 7 - 250 2e-99 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 696
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 233, 566
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 2 cut(s) 77, 696
AflII CTTAAG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 4 cut(s) 95, 216, 606, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 6 cut(s) 55, 151, 164, 254, 481, 602
AluI AGCT 6 cut(s) 55, 151, 164, 254, 481, 602
Alw26I GTCTC 2 cut(s) 352, 534
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 242, 510
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 233, 566
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspS9I GGNCC 4 cut(s) 38, 338, 641, 704
AvaII GGWCC 4 cut(s) 38, 338, 641, 704
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 335
BccI CCATC 5 cut(s) 68, 253, 611, 619, 698
BcoDI GTCTC 2 cut(s) 352, 534
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 2 cut(s) 159, 249
BfrI CTTAAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 60, 324
BlsI GCNGC 2 cut(s) 61, 325
Bme18I GGWCC 4 cut(s) 38, 338, 641, 704
BmgT120I GGNCC 4 cut(s) 38, 338, 641, 704
BmsI GCATC 4 cut(s) 172, 568, 618, 658
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 513
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 696
Bse3DI GCAATG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 4 cut(s) 18, 350, 609, 630
BseLI CCNNNNNNNGG 2 cut(s) 77, 696
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 126, 210, 462
BseRI GAGGAG 2 cut(s) 131, 134
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 244, 512
BslI CCNNNNNNNGG 2 cut(s) 77, 696
BsmAI GTCTC 2 cut(s) 352, 534
BsmI GAATGC 2 cut(s) 185, 763
BsnI GGCC 2 cut(s) 244, 512
Bso31I GGTCTC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 4 cut(s) 130, 166, 366, 417
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 244, 512
BspCNI CTCAG 3 cut(s) 127, 211, 461
BspPI GGATC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 774
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 4 cut(s) 130, 166, 366, 417
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 3 cut(s) 57, 141, 153
BstDEI CTNAG 4 cut(s) 135, 219, 448, 807
BstF5I GGATG 4 cut(s) 18, 350, 609, 630
BstKTI GATC 4 cut(s) 133, 169, 369, 420
BstMAI GTCTC 2 cut(s) 352, 534
BstMBI GATC 4 cut(s) 130, 166, 366, 417
BstMWI GCNNNNNNNGC 2 cut(s) 161, 578
BstNSI RCATGY 2 cut(s) 143, 787
BstSFI CTRYAG 2 cut(s) 159, 249
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 244, 512
BtsCI GGATG 4 cut(s) 18, 350, 609, 630
BtsIMutI CAGTG 3 cut(s) 374, 456, 543
Cac8I GCNNGC 3 cut(s) 57, 141, 153
Cfr13I GGNCC 4 cut(s) 38, 338, 641, 704
Csp6I GTAC 1 cut(s) 775
CviAII CATG 3 cut(s) 140, 209, 784
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 4 cut(s) 135, 219, 448, 807
DpnI GATC 4 cut(s) 132, 168, 368, 419
DpnII GATC 4 cut(s) 130, 166, 366, 417
Eco130I CCWWGG 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 4 cut(s) 38, 338, 641, 704
Eco57I CTGAAG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 3 cut(s) 143, 212, 787
FaiI YATR 8 cut(s) 141, 201, 210, 554, 779, 785, 798, 800
FatI CATG 3 cut(s) 139, 208, 783
Fnu4HI GCNGC 2 cut(s) 60, 324
FokI GGATG 4 cut(s) 25, 337, 596, 637
Fsp4HI GCNGC 2 cut(s) 60, 324
FspBI CTAG 1 cut(s) 482
GluI GCNGC 2 cut(s) 60, 324
HaeIII GGCC 2 cut(s) 244, 512
Hin1II CATG 3 cut(s) 143, 212, 787
HinfI GANTC 3 cut(s) 29, 371, 647
Hpy166II GTNNAC 1 cut(s) 789
Hpy188I TCNGA 2 cut(s) 191, 342
Hpy188III TCNNGA 5 cut(s) 41, 71, 92, 134, 575
Hpy8I GTNNAC 1 cut(s) 789
HpyAV CCTTC 4 cut(s) 95, 265, 337, 379
HpyCH4III ACNGT 1 cut(s) 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 578
HpyF3I CTNAG 4 cut(s) 135, 219, 448, 807
Hsp92II CATG 3 cut(s) 143, 212, 787
Kzo9I GATC 4 cut(s) 130, 166, 366, 417
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 4 cut(s) 172, 568, 618, 658
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 226, 372
MalI GATC 4 cut(s) 132, 168, 368, 419
MboI GATC 4 cut(s) 130, 166, 366, 417
MboII GAAGA 4 cut(s) 38, 80, 136, 412
MluCI AATT 4 cut(s) 233, 399, 555, 566
MlyI GAGTC 3 cut(s) 23, 380, 641
MnlI CCTC 7 cut(s) 96, 109, 112, 166, 214, 404, 742
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 4 cut(s) 239, 398, 654, 675
MslI CAYNNNNRTG 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 238
Mva1269I GAATGC 2 cut(s) 185, 763
MwoI GCNNNNNNNGC 2 cut(s) 161, 578
NdeII GATC 4 cut(s) 130, 166, 366, 417
NlaIII CATG 3 cut(s) 143, 212, 787
NmuCI GTSAC 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 143, 787
PaeI GCATGC 1 cut(s) 143
PciI ACATGT 1 cut(s) 783
PctI GAATGC 2 cut(s) 185, 763
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 2 cut(s) 61, 325
PleI GAGTC 3 cut(s) 23, 379, 641
PpsI GAGTC 3 cut(s) 23, 379, 641
PscI ACATGT 1 cut(s) 783
PspPI GGNCC 4 cut(s) 38, 338, 641, 704
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 1 cut(s) 782
SaqAI TTAA 4 cut(s) 239, 398, 654, 675
SatI GCNGC 2 cut(s) 60, 324
Sau3AI GATC 4 cut(s) 130, 166, 366, 417
Sau96I GGNCC 4 cut(s) 38, 338, 641, 704
SchI GAGTC 3 cut(s) 23, 380, 641
SfaNI GCATC 4 cut(s) 172, 568, 618, 658
SfcI CTRYAG 2 cut(s) 159, 249
SinI GGWCC 4 cut(s) 38, 338, 641, 704
SmiMI CAYNNNNRTG 1 cut(s) 782
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 143
Sse9I AATT 4 cut(s) 233, 399, 555, 566
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 482
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 378
TaqI TCGA 2 cut(s) 279, 369
TasI AATT 4 cut(s) 233, 399, 555, 566
TatI WGTACW 1 cut(s) 774
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 4 cut(s) 239, 398, 654, 675
Tru9I TTAA 4 cut(s) 239, 398, 654, 675
TscAI CASTG 3 cut(s) 381, 456, 550
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 2 cut(s) 447, 756
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 3 cut(s) 381, 456, 550
Van91I CCANNNNNTGG 1 cut(s) 696
Vha464I CTTAAG 1 cut(s) 238
VpaK11BI GGWCC 4 cut(s) 38, 338, 641, 704
XapI RAATTY 2 cut(s) 233, 566
XceI RCATGY 2 cut(s) 143, 787
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.