Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016091

Physical Location & Seq

Genomic Coordinates Forward (+)

18589025 .. 18591760

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1078800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGACAAACTAGCTCCATTTCACCACCTCTCCACACCTTTCCTCTTAAACCCGACAATCTTCAACCCCCCAAGAACCCAAAAAGCTCCAGGCTTTACCTTATTGGATGACTTGGGTCAGGTCAAAACTCTGAATTTAGTGAAAGCAAGGCATGCCCAGATGATAAAATTGTCTAAAAAGAGTAACATGGATGCCAAGGGAAATAATTTGGTCACATATTACTTGGAATTTGGTGATTGTAGGTCTGCTGCAATGGCTTTGTTTGCCAGCTCTGCACAAAACTATCACTCATGGAGTTCTTGCCTAGATGAACTTAGAAGATTTGGGGGGGACCCACAAATTCTTGAGCTTTTTTGTGAGTTTCATGGAGGTGGAGTGATGTTTGATAGCAAAGTTGTTTGTGTTGTTTTGGAAATCTGTGCAAGTTTGAAGAAGTTGTGGCCTGGGTTGGAAATTCATGGGTATTTGATCAAAAGGGGTTTTGAATTTGATGTGTATTTGAAGTGTGCATTGATCAATTTTTATGAGAGTTGTTGGGGCATAGAAAGTGCCAACCAAATGTTTGATGAAATGCCTGAGAAGGAAGATATTTTATGGAATGAGGTGATCAAGCTCAACTTGAAGAATGGGAGATGGGTGAAGGCATTGGAATTGTTCAGAAGTATGCAGTTTTCACGTGCTGAAGCAAACAGTTCTACAATTGTCAAAGAACTACAAGCTTGTGGAAAAGTTAGAGCTCTCAATGCAGGAAAGCAGATTCATGGGTATGTTTTAAGATGGGCATTGGATTCAGATTTGTCAATATGCAATTCACTTATTAGCATGTATTCAAGAAATGACAGATTAGAATCAGCTAGGAAAGTTTTTAATTCAATGAAAGATCGTAACTTATCGACATGGAACTCGATTATCTCTTCTTATGCTTCGCTTGGTTGTTTGAATGATGCTTGGATTCTTTTCCATGAAATGGAATTGTCTTATGTGAAGCCAGACATTGTGACTTGGAATTGCCTTCTGTCAGGACATTTTAACCATGGCTCATATGTAGCTGTCCTGGTGGTTTTGCAGCGAATGCAAAAAGCGGGCTTTAAGCCAAATTCAAGCTCTATCACTAGTGTTCTTCAAGCGGTTACTGAGTTATGTGTCTTGAAACATGGGAAAGAAGTTCATGGTTTCGTGATAAGAAATGGGCTTGATGAGTATGATGTTTACGTAGGAACTTCGTTGGTAGACATGTATGTGAAGAATGATTGTTTGTCCAGTGCTCGAAATGTTTTTGATAATATGAAGAACAAGAACATTTTTGCTTGGAATTCATTGATCTCAGGGTATTCCTTCAAGGGTATTTTCAAAGATGCTGAAAGACTATTACGTAACATGAGTCAGGAAGGAATCAAGCCCGACTTAGTTACATGGAATGGTCTGGTTTCGGGGTATGCAATGAGGGGCCTCCATAAGGAAGCTTTGGCTGTGATTCATCGGATTAAAAGTTCAGGGTTAACTCCTAATGTGGTTTCATGGACTGCTCTTATATCAGGCTGCTCGCACAATGAGAATTACGCAGGCTCACTCAAGTTTTTCATCCAAATGCAAAAAGAAGGTATCAGGGCAAACTCTGCCACCATATCCATCCTACTTAAAGCTTGTGCAGGCCTATCATTGTTGCACAAGGGTGAAGAGATACATTGTCTCAGTATACGAAAAGGTTTCGTTGAGGATGTATATGTAGCCACAGGACTCATCGACATGTACTGTAAGGCAGGTGATTTCAGAAGTGCCCATGAGGTTTTTAGGAGGACTAAGAACAAGACTTTAGCTTCTTGGAACTGCATGATTATGGGGTTTGCCATTTATGGCTTTGGGAAAGAGGCTATTTCTCTTTTCGAAGAAATGCGAGGAGTAGGTGTGCAGCCAGATGCTATAACCTTTACAGCTCTGCTCTCTGGTTGCAAGAACTCGGTCTTAGTTGATGAAGGATGGAACTTGTTTGATAGTATGACAACCGATTATAACATAGCTCCGACAATTGAGCATTTCTCTTGCATGGTAGATCTTCTCGGAAGAGCTAGTTATCTTGACGAAGCTTGGGATTTTATACAAACGATGCCATTAAAGCCGGATGCAACTATATGGGGTGCTTTCCTCACATCCTGTCGAATCCACAAAAACTTGAGGTTTGCAGAGATTGCAGCAAAGAATCTCTTTGAGTTGGAACCTCATAATCCAGCCAATTATGTCTTGATGATGAACTTATATTCAATGTCAAATAGATGGGAGGATGTAGAGCGTCTTAAAGATTTGATGAAGAATGCCGGGGTGAAAAACGGGCCTGTGTGGAGCTGGATACAAATTGATCAGACAGTTCATGTGTTCTCTGCCGAAGGGAAACCTCATACCGATGCAGGAGAAATATATTTTGAATTGTATCATCTGGTTCATGAGATGAAGAAATTCGGGTATGAGCCTGACGTTAGCTGTGTACATCAGAACATTGATGAGGCGGAGAAGAAGAAGCTGCTGCTAAGTCACACAGAGAAACTGGCCATTACTTACGGACTGATGAATACAAAAAGTGGAGAACCTATCAGGGTGATTAAGAACACACGAGTTTGTTCCGATTGCCATACAGCAGCAAAATACATGTCGTTAGCACGTAAACGCGAGATTTTACTCAAGGATGGTGTCGGGTTTCACCGTTTTAGTGAAGGAGAGTGTACCTGCAATGACTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

912

Amino Acids

102.95

Weight (kDa)

7.87

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	266 - 297	7.5e-06	PPR repeat family
PPR	PF01535	268 - 296	8.5e-06	PPR repeat
PPR_2	PF13041	296 - 334	3.9e-07	PPR repeat family
PPR_3	PF13812	319 - 369	8.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	330 - 376	4.3e-09	PPR repeat family
PPR_2	PF13041	432 - 480	2.6e-11	PPR repeat family
PPR_3	PF13812	455 - 515	5.9e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	467 - 515	1.1e-09	PPR repeat family
PPR_2	PF13041	502 - 550	2.5e-11	PPR repeat family
PPR_2	PF13041	606 - 651	1.4e-10	PPR repeat family
PPR	PF01535	607 - 636	5.9e-06	PPR repeat
E_motif	PF20431	721 - 783	9.1e-19	E motif
DYW_deaminase	PF14432	819 - 911	4.6e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01030
fragaria_vesca	FvH4_7g16210
malus_domestica	MD01G1078800.v1.1
prunus_persica	Prupe.2G185700_v2.0.a1 Prupe.2G185700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359241
rosa_laevigata	RLG00000027892
rosa_multiflora	Rmu_ssc0000135.1_g000027
rosa_roxburghii	Rroxscaffold_4G00297210
rosa_rugosa	Rorug01G0268800
rosa_samantha	Rh1AG282600 Rh1BG249000 Rh1CG266700 Rh1DG277800
rosa_wichuraiana	Rw1G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2010
AarI	CACCTGC	1 cut(s)	1751
Acc36I	ACCTGC	2 cut(s)	1751, 2726
AccB7I	CCANNNNNTGG	1 cut(s)	967
AccI	GTMKAC	2 cut(s)	1230, 1696
AccII	CGCG	1 cut(s)	2661
AciI	CCGC	3 cut(s)	1082, 1127, 2501
AcoI	YGGCCR	1 cut(s)	2541
AcsI	RAATTY	8 cut(s)	133, 227, 339, 453, 485, 1096, 1312, 2450
AcuI	CTGAAG	1 cut(s)	702
AcvI	CACGTG	1 cut(s)	677
AfaI	GTAC	3 cut(s)	1751, 2481, 2716
AfiI	CCNNNNNNNGG	2 cut(s)	967, 1456
AflIII	ACRYGT	3 cut(s)	1233, 1746, 2640
AhlI	ACTAGT	1 cut(s)	1112
AjnI	CCWGG	3 cut(s)	88, 442, 1053
AleI	CACNNNNGTG	1 cut(s)	1671
AloI	GAACNNNNNNTCC	2 cut(s)	1474, 1506
Alw21I	GWGCWC	2 cut(s)	739, 1267
Alw26I	GTCTC	1 cut(s)	1694
AoxI	GGCC	5 cut(s)	440, 1447, 1651, 2327, 2541
ApeKI	GCWGC	8 cut(s)	248, 1066, 1539, 1909, 2189, 2515, 2518, 2630
ApoI	RAATTY	8 cut(s)	133, 227, 339, 453, 485, 1096, 1312, 2450
ArsI	GACNNNNNNTTYG	2 cut(s)	2627, 2659
Asp700I	GAANNNNTTC	1 cut(s)	2450
AspS9I	GGNCC	3 cut(s)	331, 1447, 2327
AsuC2I	CCSGG	1 cut(s)	2314
AsuHPI	GGTGA	9 cut(s)	14, 245, 616, 649, 1685, 1775, 2329, 2602, 2684
AsuII	TTCGAA	1 cut(s)	1884
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	1780
BalI	TGGCCA	1 cut(s)	2543
BanII	GRGCYC	1 cut(s)	739
BauI	CACGAG	1 cut(s)	2604
BbrPI	CACGTG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	739, 1267
BbvI	GCAGC	8 cut(s)	235, 1078, 1526, 1921, 2201, 2502, 2505, 2642
BccI	CCATC	6 cut(s)	627, 771, 1637, 1971, 2265, 2672
BciT130I	CCWGG	3 cut(s)	90, 444, 1055
BciVI	GTATCC	1 cut(s)	2337
BclI	TGATCA	4 cut(s)	468, 513, 606, 2353
BcnI	CCSGG	1 cut(s)	2314
BcoDI	GTCTC	1 cut(s)	1694
BcuI	ACTAGT	1 cut(s)	1112
BfaI	CTAG	5 cut(s)	11, 305, 855, 1113, 2067
BfuAI	ACCTGC	2 cut(s)	1751, 2726
BfuI	GTATCC	1 cut(s)	2337
BglII	AGATCT	1 cut(s)	2050
BisI	GCNGC	8 cut(s)	249, 1067, 1540, 1910, 2190, 2516, 2519, 2631
BlsI	GCNGC	8 cut(s)	250, 1068, 1541, 1911, 2191, 2517, 2520, 2632
Bme1390I	CCNGG	4 cut(s)	90, 444, 1055, 2314
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	3 cut(s)	331, 1447, 2327
BmiI	GGNNCC	4 cut(s)	332, 333, 1448, 2214
BmrFI	CCNGG	4 cut(s)	90, 444, 1055, 2314
BmsI	GCATC	7 cut(s)	181, 934, 1345, 1906, 2094, 2110, 2389
BoxI	GACNNNNGTC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	2021, 2053
BpmI	CTGGAG	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	1884
BpuEI	CTTGAG	4 cut(s)	365, 1556, 2191, 2657
BpuMI	CCSGG	1 cut(s)	2314
BsaAI	YACGTR	4 cut(s)	677, 1213, 1373, 2654
BsaBI	GATNNNNATC	1 cut(s)	847
BsaJI	CCNNGG	4 cut(s)	195, 443, 1033, 2313
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 360, 390, 1890, 1920
Bsc4I	CCNNNNNNNGG	2 cut(s)	967, 1456
Bse1I	ACTGG	2 cut(s)	1260, 2544
Bse3DI	GCAATG	3 cut(s)	258, 1446, 2728
Bse8I	GATNNNNATC	1 cut(s)	847
BseBI	CCWGG	3 cut(s)	90, 444, 1055
BseDI	CCNNGG	4 cut(s)	195, 443, 1033, 2313
BseJI	GATNNNNATC	1 cut(s)	847
BseLI	CCNNNNNNNGG	2 cut(s)	967, 1456
BseMI	GCAATG	3 cut(s)	258, 1446, 2728
BseMII	CTCAG	4 cut(s)	567, 1125, 1338, 1705
BseNI	ACTGG	2 cut(s)	1260, 2544
BseRI	GAGGAG	1 cut(s)	1911
BseSI	GKGCMC	1 cut(s)	1780
BseXI	GCAGC	8 cut(s)	235, 1078, 1526, 1921, 2201, 2502, 2505, 2642
BsgI	GTGCAG	3 cut(s)	258, 1668, 1928
Bsh1236I	CGCG	1 cut(s)	2661
BshFI	GGCC	5 cut(s)	442, 1449, 1653, 2329, 2543
BsiHKAI	GWGCWC	2 cut(s)	739, 1267
BsiSI	CCGG	2 cut(s)	2117, 2313
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	967, 1456
BsmAI	GTCTC	1 cut(s)	1694
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	2 cut(s)	1077, 2314
BsnI	GGCC	5 cut(s)	442, 1449, 1653, 2329, 2543
Bsp119I	TTCGAA	1 cut(s)	1884
Bsp1286I	GDGCHC	3 cut(s)	739, 1267, 1780
Bsp1407I	TGTACA	1 cut(s)	2479
Bsp143I	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
Bsp19I	CCATGG	1 cut(s)	1033
BspACI	CCGC	3 cut(s)	1082, 1127, 2501
BspANI	GGCC	5 cut(s)	442, 1449, 1653, 2329, 2543
BspCNI	CTCAG	4 cut(s)	568, 1126, 1337, 1704
BspFNI	CGCG	1 cut(s)	2661
BspHI	TCATGA	1 cut(s)	2437
BspLI	GGNNCC	4 cut(s)	332, 333, 1448, 2214
BspMI	ACCTGC	2 cut(s)	1751, 2726
BspQI	GCTCTTC	1 cut(s)	2056
BspT104I	TTCGAA	1 cut(s)	1884
BsrDI	GCAATG	3 cut(s)	258, 1446, 2728
BsrGI	TGTACA	1 cut(s)	2479
BsrI	ACTGG	2 cut(s)	1260, 2544
BssECI	CCNNGG	4 cut(s)	195, 443, 1033, 2313
BssMI	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
BssNAI	GTATAC	1 cut(s)	1697
BssSI	CACGAG	1 cut(s)	2604
BssT1I	CCWWGG	2 cut(s)	195, 1033
Bst1107I	GTATAC	1 cut(s)	1697
Bst2BI	CACGAG	1 cut(s)	2604
Bst2UI	CCWGG	3 cut(s)	90, 444, 1055
Bst4CI	ACNGT	4 cut(s)	692, 1754, 2362, 2696
Bst6I	CTCTTC	3 cut(s)	919, 1671, 2056
BstAPI	GCANNNNNTGC	5 cut(s)	152, 1072, 1616, 2186, 2727
BstAUI	TGTACA	1 cut(s)	2479
BstBAI	YACGTR	4 cut(s)	677, 1213, 1373, 2654
BstBI	TTCGAA	1 cut(s)	1884
BstC8I	GCNNGC	6 cut(s)	153, 268, 1084, 1544, 1564, 1651
BstDEI	CTNAG	9 cut(s)	314, 576, 1134, 1324, 1405, 1691, 1800, 1963, 2522
BstDSI	CCRYGG	1 cut(s)	1033
BstENI	CCTNNNNNAGG	1 cut(s)	1454
BstFNI	CGCG	1 cut(s)	2661
BstKTI	GATC	7 cut(s)	471, 516, 609, 883, 1323, 2053, 2356
BstMAI	GTCTC	1 cut(s)	1694
BstMBI	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
BstNI	CCWGG	3 cut(s)	90, 444, 1055
BstNSI	RCATGY	5 cut(s)	155, 826, 1237, 1750, 2644
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSCI	CCNGG	4 cut(s)	88, 442, 1053, 2312
BstSLI	GKGCMC	1 cut(s)	1780
BstSNI	TACGTA	2 cut(s)	1213, 1373
BstUI	CGCG	1 cut(s)	2661
BstV1I	GCAGC	8 cut(s)	235, 1078, 1526, 1921, 2201, 2502, 2505, 2642
BstX2I	RGATCY	1 cut(s)	2050
BstYI	RGATCY	1 cut(s)	2050
BstZ17I	GTATAC	1 cut(s)	1697
BsuI	GTATCC	1 cut(s)	2337
BsuRI	GGCC	5 cut(s)	442, 1449, 1653, 2329, 2543
BtgI	CCRYGG	1 cut(s)	1033
BtsIMutI	CAGTG	1 cut(s)	1267
BveI	ACCTGC	2 cut(s)	1751, 2726
Cac8I	GCNNGC	6 cut(s)	153, 268, 1084, 1544, 1564, 1651
CciI	TCATGA	1 cut(s)	2437
Cfr13I	GGNCC	3 cut(s)	331, 1447, 2327
CseI	GACGC	1 cut(s)	2276
Csp6I	GTAC	3 cut(s)	1750, 2480, 2715
CviQI	GTAC	3 cut(s)	1750, 2480, 2715
DdeI	CTNAG	9 cut(s)	314, 576, 1134, 1324, 1405, 1691, 1800, 1963, 2522
DpnI	GATC	7 cut(s)	470, 515, 608, 882, 1322, 2052, 2355
DpnII	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
EaeI	YGGCCR	1 cut(s)	2541
Eam1104I	CTCTTC	3 cut(s)	919, 1671, 2056
EarI	CTCTTC	3 cut(s)	919, 1671, 2056
EciI	GGCGGA	1 cut(s)	2516
Ecl136II	GAGCTC	1 cut(s)	737
Eco105I	TACGTA	2 cut(s)	1213, 1373
Eco130I	CCWWGG	2 cut(s)	195, 1033
Eco147I	AGGCCT	1 cut(s)	1653
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	702
Eco72I	CACGTG	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	737
EcoNI	CCTNNNNNAGG	1 cut(s)	1454
EcoO109I	RGGNCCY	2 cut(s)	331, 1447
EcoRI	GAATTC	1 cut(s)	1312
EcoRII	CCWGG	3 cut(s)	88, 442, 1053
EcoT14I	CCWWGG	2 cut(s)	195, 1033
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	2 cut(s)	195, 1033
FalI	AAGNNNNNCTT	6 cut(s)	602, 634, 1388, 1420, 2186, 2218
FaqI	GGGAC	1 cut(s)	344
FauI	CCCGC	1 cut(s)	1075
FauNDI	CATATG	1 cut(s)	1042
FbaI	TGATCA	4 cut(s)	468, 513, 606, 2353
FblI	GTMKAC	2 cut(s)	1230, 1696
Fnu4HI	GCNGC	8 cut(s)	249, 1067, 1540, 1910, 2190, 2516, 2519, 2631
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	8 cut(s)	249, 1067, 1540, 1910, 2190, 2516, 2519, 2631
FspBI	CTAG	5 cut(s)	11, 305, 855, 1113, 2067
GluI	GCNGC	8 cut(s)	249, 1067, 1540, 1910, 2190, 2516, 2519, 2631
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	442, 1449, 1653, 2329, 2543
HapII	CCGG	2 cut(s)	2117, 2313
HgaI	GACGC	1 cut(s)	2276
HincII	GTYRAC	1 cut(s)	1500
HindII	GTYRAC	1 cut(s)	1500
HindIII	AAGCTT	4 cut(s)	717, 1461, 1641, 2082
HpaI	GTTAAC	1 cut(s)	1500
HpaII	CCGG	2 cut(s)	2117, 2313
HphI	GGTGA	9 cut(s)	14, 245, 616, 649, 1685, 1775, 2329, 2602, 2684
Hpy166II	GTNNAC	7 cut(s)	1210, 1231, 1500, 1697, 2480, 2657, 2715
Hpy188III	TCNNGA	9 cut(s)	344, 831, 1020, 1147, 1177, 1385, 2075, 2239, 2438
Hpy8I	GTNNAC	7 cut(s)	1210, 1231, 1500, 1697, 2480, 2657, 2715
HpyAV	CCTTC	9 cut(s)	574, 634, 1022, 1345, 1382, 1592, 1967, 2375, 2699
HpyCH4III	ACNGT	4 cut(s)	692, 1754, 2362, 2696
HpyCH4IV	ACGT	5 cut(s)	676, 1212, 1372, 2469, 2653
HpyF3I	CTNAG	9 cut(s)	314, 576, 1134, 1324, 1405, 1691, 1800, 1963, 2522
HpySE526I	ACGT	5 cut(s)	676, 1212, 1372, 2469, 2653
KflI	GGGWCCC	1 cut(s)	331
Ksp22I	TGATCA	4 cut(s)	468, 513, 606, 2353
KspAI	GTTAAC	1 cut(s)	1500
Kzo9I	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
LguI	GCTCTTC	1 cut(s)	2056
LmnI	GCTCC	4 cut(s)	19, 91, 2023, 2337
Lsp1109I	GCAGC	8 cut(s)	235, 1078, 1526, 1921, 2201, 2502, 2505, 2642
LweI	GCATC	7 cut(s)	181, 934, 1345, 1906, 2094, 2110, 2389
MaeI	CTAG	5 cut(s)	11, 305, 855, 1113, 2067
MaeII	ACGT	5 cut(s)	676, 1212, 1372, 2469, 2653
MaeIII	GTNAC	8 cut(s)	182, 211, 884, 997, 1129, 1373, 1408, 2525
MalI	GATC	7 cut(s)	470, 515, 608, 882, 1322, 2052, 2355
MboI	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
MfeI	CAATTG	2 cut(s)	699, 2025
MflI	RGATCY	1 cut(s)	2050
MhlI	GDGCHC	3 cut(s)	739, 1267, 1780
MlsI	TGGCCA	1 cut(s)	2543
MluNI	TGGCCA	1 cut(s)	2543
MlyI	GAGTC	2 cut(s)	1390, 1731
MmeI	TCCRAC	3 cut(s)	429, 2045, 2190
Mox20I	TGGCCA	1 cut(s)	2543
MroXI	GAANNNNTTC	1 cut(s)	2450
MscI	TGGCCA	1 cut(s)	2543
MslI	CAYNNNNRTG	8 cut(s)	369, 765, 1238, 1586, 1671, 1745, 1835, 2397
Msp20I	TGGCCA	1 cut(s)	2543
MspI	CCGG	2 cut(s)	2117, 2313
MspR9I	CCNGG	4 cut(s)	90, 444, 1055, 2314
MunI	CAATTG	2 cut(s)	699, 2025
Mva1269I	GAATGC	2 cut(s)	1077, 2314
MvaI	CCWGG	3 cut(s)	90, 444, 1055
MvnI	CGCG	1 cut(s)	2661
NciI	CCSGG	1 cut(s)	2314
NcoI	CCATGG	1 cut(s)	1033
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
NlaIV	GGNNCC	4 cut(s)	332, 333, 1448, 2214
NmuCI	GTSAC	3 cut(s)	211, 997, 2525
NspI	RCATGY	5 cut(s)	155, 826, 1237, 1750, 2644
NspV	TTCGAA	1 cut(s)	1884
OliI	CACNNNNGTG	1 cut(s)	1671
PaeI	GCATGC	1 cut(s)	155
PagI	TCATGA	1 cut(s)	2437
PaqCI	CACCTGC	1 cut(s)	1751
PceI	AGGCCT	1 cut(s)	1653
PciI	ACATGT	3 cut(s)	1233, 1746, 2640
PciSI	GCTCTTC	1 cut(s)	2056
PctI	GAATGC	2 cut(s)	1077, 2314
PdmI	GAANNNNTTC	1 cut(s)	2450
PfeI	GAWTC	8 cut(s)	757, 788, 848, 952, 1392, 1474, 2157, 2197
PflMI	CCANNNNNTGG	1 cut(s)	967
PkrI	GCNGC	8 cut(s)	250, 1068, 1541, 1911, 2191, 2517, 2520, 2632
PleI	GAGTC	2 cut(s)	1389, 1731
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	2 cut(s)	1389, 1731
Ppu21I	YACGTR	4 cut(s)	677, 1213, 1373, 2654
PpuMI	RGGWCCY	1 cut(s)	331
PscI	ACATGT	3 cut(s)	1233, 1746, 2640
PshAI	GACNNNNGTC	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	2010
Psp124BI	GAGCTC	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	88, 442, 1053
PspCI	CACGTG	1 cut(s)	677
PspGI	CCWGG	3 cut(s)	88, 442, 1053
PspN4I	GGNNCC	4 cut(s)	332, 333, 1448, 2214
PspPI	GGNCC	3 cut(s)	331, 1447, 2327
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	2050
RsaI	GTAC	3 cut(s)	1751, 2481, 2716
RsaNI	GTAC	3 cut(s)	1750, 2480, 2715
RseI	CAYNNNNRTG	8 cut(s)	369, 765, 1238, 1586, 1671, 1745, 1835, 2397
SacI	GAGCTC	1 cut(s)	739
SapI	GCTCTTC	1 cut(s)	2056
SatI	GCNGC	8 cut(s)	249, 1067, 1540, 1910, 2190, 2516, 2519, 2631
Sau3AI	GATC	7 cut(s)	468, 513, 606, 880, 1320, 2050, 2353
Sau96I	GGNCC	3 cut(s)	331, 1447, 2327
SchI	GAGTC	2 cut(s)	1390, 1731
ScrFI	CCNGG	4 cut(s)	90, 444, 1055, 2314
SduI	GDGCHC	3 cut(s)	739, 1267, 1780
SfaNI	GCATC	7 cut(s)	181, 934, 1345, 1906, 2094, 2110, 2389
SfuI	TTCGAA	1 cut(s)	1884
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	8 cut(s)	369, 765, 1238, 1586, 1671, 1745, 1835, 2397
SmlI	CTYRAG	4 cut(s)	344, 1571, 2170, 2672
SmoI	CTYRAG	4 cut(s)	344, 1571, 2170, 2672
SnaBI	TACGTA	2 cut(s)	1213, 1373
SpeI	ACTAGT	1 cut(s)	1112
SphI	GCATGC	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	1653
SsiI	CCGC	3 cut(s)	1082, 1127, 2501
SspMI	CTAG	5 cut(s)	11, 305, 855, 1113, 2067
SstI	GAGCTC	1 cut(s)	739
StuI	AGGCCT	1 cut(s)	1653
StyD4I	CCNGG	4 cut(s)	88, 442, 1053, 2312
StyI	CCWWGG	2 cut(s)	195, 1033
TaaI	ACNGT	4 cut(s)	692, 1754, 2362, 2696
TaiI	ACGT	5 cut(s)	679, 1215, 1375, 2472, 2656
TaqI	TCGA	6 cut(s)	893, 905, 1267, 1743, 1884, 2155
TaqII	GACCGA	1 cut(s)	1948
TatI	WGTACW	2 cut(s)	1749, 2479
TfiI	GAWTC	8 cut(s)	757, 788, 848, 952, 1392, 1474, 2157, 2197
TscAI	CASTG	1 cut(s)	1267
TseFI	GTSAC	3 cut(s)	211, 997, 2525
TseI	GCWGC	8 cut(s)	248, 1066, 1539, 1909, 2189, 2515, 2518, 2630
Tsp45I	GTSAC	3 cut(s)	211, 997, 2525
TspGWI	ACGGA	1 cut(s)	2568
TspRI	CASTG	1 cut(s)	1267
Van91I	CCANNNNNTGG	1 cut(s)	967
VpaK11BI	GGWCC	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	1454
XapI	RAATTY	8 cut(s)	133, 227, 339, 453, 485, 1096, 1312, 2450
XceI	RCATGY	5 cut(s)	155, 826, 1237, 1750, 2644
XmiI	GTMKAC	2 cut(s)	1230, 1696
XmnI	GAANNNNTTC	1 cut(s)	2450
XspI	CTAG	5 cut(s)	11, 305, 855, 1113, 2067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.