Prupe.2G185700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
22691734 .. 22695104
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G185700.2

Sequence Viewer

Length: 1854 bp
ATGGGAGAACTGTGGAGGCTCTGGAACTGTTCAGAAGTATGCAGTTTTCATCTGCTAAAGCCAACAGTACTACAATTGTCAAAGCACTCCAAGCATGTGGCAAACTTAGAGCTCTCAAAGAAGGAAAGCAAATTCATGGGACATTCTCTTCATGGCTCATATGAAGCAGTCCAGGCCATCTTGCAGAAAATGCAAGACGCAGGCTTCAAGCCAAATTCAAGCTCCATTACAAGTGTTCTTCAAGCAGTTACTGAATCATGTTTCCTGAAACACGGGAAGGAAATTCATAGTTTTGTTTTAAGAAATGGGCTTGATGACTATGATGTTTATGTAGGAACTTCGTTAGTGGACATGTATGTGAAGAACAATTGTTTGTCCAGTGCTCAAAATGTCTTCATTAACATGAAGAACAAGAATATTTTTGCTTGGAATTCATTGATTTCAGGGTATTCCTTCAAGGGTCTTTTTGAAGATGCTGAACGGCTATTAGATAGCATTGGTGAGGAAGGAATCAAACCCAACTTAGTCACATGGAATGGTCTGGTTTCAGGGTATGCAATGTGGGGTCGCCATAAGGAAGCTTTATCGACGATTCATCGGATTAAAAGTTCAGGGTTAACCCCTAATGTGGTTTCTTGGACTGCTCTTATATCAGGCTGTTCACAAAATGAGAATTACACGGACTCCCTCAAATTTTTTATCCAAATGCAAGAAGAAGGTATCAGGGCAAACTCTGCCACCGTATCCATCCTACTTAAAGCTTGTGCAGGCCTATCTTTGTTGCACAAGGGTGAAGAGATACACTGCCTCTGTATCCGAAAAGGTTTTGTTGAGGATATATTTGTAGCCACAGGACTTATCAACATGTACAGTAAGTCAGGAAAGTTCAAAAGTGCCCATCAGGTTTTTAGGAAGATTAAGAACAAGACGTTAGCTTCTTGGAATTGCATGATTATGGCATTTGCCATTTATGGCTTTGGGAAAGAGGCTATTTCTCTGTTTGATGAAATGCGAGGAGCAGGTGTGCAGCCAGATGCTATAACCTTCACAGCTCTGCTCTCTGGCTGCAAGAACTCAGGTTTAGTTGATGAAGGATGGAAATTGTTTGATAGCATGAGCACAGACTATAACATAGCTCCAACAGTTGAGCATTTCTCTTGCATGGTAGATCTTCTTGGAAGAGCTAGTTATCTTGATGAAGCTTGGGATTTTATTCAAACGATGCCATTAAAGCCGGATGCCACTATATGGGGTGCTTTTCTTGCATCCTGTCGAATCCATAAAAACTTGGCATTTGCAGAGATTGCAGCAAAGAATCTTTTTGAGTTGGAACCTCATAACCCAGCCAATTACGTCTTGATGATGAACTTATATTCTATGTCAAATAGATGGGATGATGTGGAGCGTCTTAAAGCCTTGATGAAGAATACAGGGGTGAAAAATGGACCTGTGTGGAGCTGGATACAAATTGATCAGGCAATTCATATGTTCTCTGCGGAAGGGAAGCCTCACACTGATGCAGGAAAAATATATTTTGAATTGTATCATTTGGTTCATGAAATGAAGAAATTAGGCTATGAGCCTGATATTAGCTGTGTACATCAGAACATTGATGAGGTGGAGAAGAAGAAGCTGCTGCTAAGTCACACAGAGAAGCTGGCCATTACCTTTGGACTGATGAATATGAAAAGTGGAGAACCTATCCGGGTGATTAAGAACACGCGAGTTTGTTCTGATTGTCATACAGCAGCAAAATACATGTCATTAATACGTAAATGTGAGATTTTCATGAAGGATGGTATCCGGTTTCACCATTTCAGGGAAGGAGAGTGTACCTGCAATGACTGCTGGTAA

Protein Analysis

618

Amino Acids

69.62

Weight (kDa)

7.79

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01030
fragaria_vesca FvH4_7g16210
malus_domestica MD01G1078800.v1.1
prunus_persica Prupe.2G185700_v2.0.a1 Prupe.2G185700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359241
rosa_laevigata RLG00000027892
rosa_multiflora Rmu_ssc0000135.1_g000027
rosa_roxburghii Rroxscaffold_4G00297210
rosa_rugosa Rorug01G0268800
rosa_samantha Rh1AG282600 Rh1BG249000 Rh1CG266700 Rh1DG277800
rosa_wichuraiana Rw1G025080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1010
Acc36I ACCTGC 2 cut(s) 1010, 1844
AccB7I CCANNNNNTGG 1 cut(s) 1248
AccII CGCG 1 cut(s) 1723
AciI CCGC 1 cut(s) 1496
AcoI YGGCCR 1 cut(s) 1659
AcsI RAATTY 5 cut(s) 131, 214, 282, 430, 692
AfaI GTAC 4 cut(s) 69, 869, 1599, 1834
AfiI CCNNNNNNNGG 3 cut(s) 628, 1248, 1819
AflIII ACRYGT 3 cut(s) 351, 864, 1758
AgsI TTSAA 8 cut(s) 208, 219, 242, 457, 470, 889, 1217, 1538
AjnI CCWGG 1 cut(s) 171
AleI CACNNNNGTG 1 cut(s) 789
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
Alw21I GWGCWC 3 cut(s) 114, 385, 1121
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 3 cut(s) 174, 769, 1659
ApeKI GCWGC 6 cut(s) 1027, 1065, 1307, 1633, 1636, 1748
ApoI RAATTY 5 cut(s) 131, 214, 282, 430, 692
ArsI GACNNNNNNTTYG 2 cut(s) 1745, 1777
AseI ATTAAT 1 cut(s) 1766
AspS9I GGNCC 1 cut(s) 1445
AsuC2I CCSGG 1 cut(s) 1706
AsuHPI GGTGA 5 cut(s) 512, 803, 1447, 1720, 1802
AvaII GGWCC 1 cut(s) 1445
BaeGI GKGCMC 1 cut(s) 898
BalI TGGCCA 1 cut(s) 1661
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 3 cut(s) 114, 385, 1121
BbvI GCAGC 6 cut(s) 1039, 1052, 1319, 1620, 1623, 1760
BccI CCATC 6 cut(s) 185, 755, 906, 1089, 1383, 1790
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 4 cut(s) 754, 824, 1455, 1811
BclI TGATCA 1 cut(s) 1471
BcnI CCSGG 1 cut(s) 1706
BfaI CTAG 1 cut(s) 1185
BfuAI ACCTGC 2 cut(s) 1010, 1844
BfuI GTATCC 4 cut(s) 754, 824, 1455, 1811
BglII AGATCT 1 cut(s) 1168
BisI GCNGC 6 cut(s) 1028, 1066, 1308, 1634, 1637, 1749
BlsI GCNGC 6 cut(s) 1029, 1067, 1309, 1635, 1638, 1750
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 173, 1706
Bme18I GGWCC 1 cut(s) 1445
BmgT120I GGNCC 1 cut(s) 1445
BmiI GGNNCC 1 cut(s) 1332
BmrFI CCNGG 2 cut(s) 173, 1706
BmsI GCATC 6 cut(s) 463, 1024, 1212, 1228, 1274, 1507
BpiI GAAGAC 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 1139, 1171
BpuMI CCSGG 1 cut(s) 1706
BsaAI YACGTR 1 cut(s) 1772
BsaWI WCCGGW 1 cut(s) 1803
BsaXI ACNNNNNCTCC 4 cut(s) 668, 698, 1008, 1038
Bsc4I CCNNNNNNNGG 3 cut(s) 628, 1248, 1819
Bse1I ACTGG 1 cut(s) 378
Bse3DI GCAATG 2 cut(s) 564, 1846
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 6 cut(s) 747, 1100, 1243, 1265, 1399, 1801
BseLI CCNNNNNNNGG 3 cut(s) 628, 1248, 1819
BseMI GCAATG 2 cut(s) 564, 1846
BseMII CTCAG 1 cut(s) 1089
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 1029
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 6 cut(s) 1039, 1052, 1319, 1620, 1623, 1760
BseYI CCCAGC 1 cut(s) 1342
BsgI GTGCAG 2 cut(s) 786, 1046
Bsh1236I CGCG 1 cut(s) 1723
BshFI GGCC 3 cut(s) 176, 771, 1661
BsiHKAI GWGCWC 3 cut(s) 114, 385, 1121
BsiSI CCGG 3 cut(s) 1235, 1705, 1804
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 3 cut(s) 628, 1248, 1819
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 3 cut(s) 176, 771, 1661
Bsp1286I GDGCHC 4 cut(s) 114, 385, 898, 1121
Bsp1407I TGTACA 2 cut(s) 867, 1597
Bsp143I GATC 2 cut(s) 1168, 1471
BspACI CCGC 1 cut(s) 1496
BspANI GGCC 3 cut(s) 176, 771, 1661
BspCNI CTCAG 1 cut(s) 1088
BspFNI CGCG 1 cut(s) 1723
BspHI TCATGA 2 cut(s) 1555, 1788
BspLI GGNNCC 1 cut(s) 1332
BspMI ACCTGC 2 cut(s) 1010, 1844
BspQI GCTCTTC 1 cut(s) 1174
BsrDI GCAATG 2 cut(s) 564, 1846
BsrGI TGTACA 2 cut(s) 867, 1597
BsrI ACTGG 1 cut(s) 378
BssMI GATC 2 cut(s) 1168, 1471
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 6 cut(s) 12, 29, 67, 742, 872, 1144
Bst6I CTCTTC 3 cut(s) 153, 789, 1174
BstAPI GCANNNNNTGC 4 cut(s) 190, 734, 1304, 1845
BstAUI TGTACA 2 cut(s) 867, 1597
BstBAI YACGTR 1 cut(s) 1772
BstC8I GCNNGC 3 cut(s) 202, 769, 1659
BstDEI CTNAG 4 cut(s) 106, 523, 1075, 1640
BstF5I GGATG 6 cut(s) 747, 1100, 1243, 1265, 1399, 1801
BstFNI CGCG 1 cut(s) 1723
BstKTI GATC 2 cut(s) 1171, 1474
BstMBI GATC 2 cut(s) 1168, 1471
BstMWI GCNNNNNNNGC 8 cut(s) 91, 173, 190, 734, 1231, 1262, 1304, 1845
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 4 cut(s) 98, 355, 868, 1762
BstSCI CCNGG 2 cut(s) 171, 1704
BstSLI GKGCMC 1 cut(s) 898
BstSNI TACGTA 1 cut(s) 1772
BstUI CGCG 1 cut(s) 1723
BstV1I GCAGC 6 cut(s) 1039, 1052, 1319, 1620, 1623, 1760
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 1168
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 1168
BsuI GTATCC 4 cut(s) 754, 824, 1455, 1811
BsuRI GGCC 3 cut(s) 176, 771, 1661
BtsCI GGATG 6 cut(s) 747, 1100, 1243, 1265, 1399, 1801
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 3 cut(s) 385, 802, 1512
BveI ACCTGC 2 cut(s) 1010, 1844
Cac8I GCNNGC 3 cut(s) 202, 769, 1659
CaiI CAGNNNCTG 1 cut(s) 251
CciI TCATGA 2 cut(s) 1555, 1788
Cfr13I GGNCC 1 cut(s) 1445
CseI GACGC 2 cut(s) 206, 1394
Csp6I GTAC 4 cut(s) 68, 868, 1598, 1833
CviQI GTAC 4 cut(s) 68, 868, 1598, 1833
DdeI CTNAG 4 cut(s) 106, 523, 1075, 1640
DpnI GATC 2 cut(s) 1170, 1473
DpnII GATC 2 cut(s) 1168, 1471
EaeI YGGCCR 1 cut(s) 1659
Eam1104I CTCTTC 3 cut(s) 153, 789, 1174
EarI CTCTTC 3 cut(s) 153, 789, 1174
Ecl136II GAGCTC 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 1772
Eco147I AGGCCT 1 cut(s) 771
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 1445
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 114
FaqI GGGAC 1 cut(s) 153
FauNDI CATATG 2 cut(s) 160, 1485
FbaI TGATCA 1 cut(s) 1471
Fnu4HI GCNGC 6 cut(s) 1028, 1066, 1308, 1634, 1637, 1749
FokI GGATG 6 cut(s) 734, 1107, 1250, 1252, 1406, 1808
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 6 cut(s) 1028, 1066, 1308, 1634, 1637, 1749
FspBI CTAG 1 cut(s) 1185
GluI GCNGC 6 cut(s) 1028, 1066, 1308, 1634, 1637, 1749
GsaI CCCAGC 1 cut(s) 1346
HaeIII GGCC 3 cut(s) 176, 771, 1661
HapII CCGG 3 cut(s) 1235, 1705, 1804
HgaI GACGC 2 cut(s) 206, 1394
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 3 cut(s) 579, 759, 1200
HinfI GANTC 6 cut(s) 254, 510, 592, 683, 1275, 1315
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 3 cut(s) 1235, 1705, 1804
HphI GGTGA 5 cut(s) 512, 803, 1447, 1720, 1802
Hpy166II GTNNAC 5 cut(s) 349, 618, 662, 1598, 1833
Hpy188I TCNGA 5 cut(s) 34, 600, 818, 1605, 1735
Hpy188III TCNNGA 7 cut(s) 22, 265, 879, 1193, 1357, 1556, 1789
Hpy8I GTNNAC 5 cut(s) 349, 618, 662, 1598, 1833
Hpy99I CGWCG 1 cut(s) 592
HpyCH4III ACNGT 6 cut(s) 12, 29, 67, 742, 872, 1144
HpyCH4IV ACGT 3 cut(s) 929, 1353, 1771
HpyF10VI GCNNNNNNNGC 8 cut(s) 91, 173, 190, 734, 1231, 1262, 1304, 1845
HpyF3I CTNAG 4 cut(s) 106, 523, 1075, 1640
HpySE526I ACGT 3 cut(s) 929, 1353, 1771
Ksp22I TGATCA 1 cut(s) 1471
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 2 cut(s) 1168, 1471
LguI GCTCTTC 1 cut(s) 1174
LmnI GCTCC 5 cut(s) 227, 1016, 1141, 1402, 1455
Lsp1109I GCAGC 6 cut(s) 1039, 1052, 1319, 1620, 1623, 1760
LweI GCATC 6 cut(s) 463, 1024, 1212, 1228, 1274, 1507
MaeI CTAG 1 cut(s) 1185
MaeII ACGT 3 cut(s) 929, 1353, 1771
MaeIII GTNAC 3 cut(s) 247, 526, 1643
MalI GATC 2 cut(s) 1170, 1473
MboI GATC 2 cut(s) 1168, 1471
MfeI CAATTG 2 cut(s) 74, 367
MflI RGATCY 1 cut(s) 1168
MhlI GDGCHC 4 cut(s) 114, 385, 898, 1121
MlsI TGGCCA 1 cut(s) 1661
MluNI TGGCCA 1 cut(s) 1661
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 2 cut(s) 1163, 1308
Mox20I TGGCCA 1 cut(s) 1661
MscI TGGCCA 1 cut(s) 1661
MslI CAYNNNNRTG 5 cut(s) 356, 401, 789, 953, 1515
Msp20I TGGCCA 1 cut(s) 1661
MspI CCGG 3 cut(s) 1235, 1705, 1804
MspR9I CCNGG 2 cut(s) 173, 1706
MunI CAATTG 2 cut(s) 74, 367
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 1723
MwoI GCNNNNNNNGC 8 cut(s) 91, 173, 190, 734, 1231, 1262, 1304, 1845
NciI CCSGG 1 cut(s) 1706
NdeI CATATG 2 cut(s) 160, 1485
NdeII GATC 2 cut(s) 1168, 1471
NlaIV GGNNCC 1 cut(s) 1332
NmuCI GTSAC 2 cut(s) 526, 1643
NspI RCATGY 4 cut(s) 98, 355, 868, 1762
OliI CACNNNNGTG 1 cut(s) 789
PagI TCATGA 2 cut(s) 1555, 1788
PaqCI CACCTGC 1 cut(s) 1010
PceI AGGCCT 1 cut(s) 771
PciI ACATGT 3 cut(s) 351, 864, 1758
PciSI GCTCTTC 1 cut(s) 1174
PfeI GAWTC 5 cut(s) 254, 510, 592, 1275, 1315
PflMI CCANNNNNTGG 1 cut(s) 1248
PkrI GCNGC 6 cut(s) 1029, 1067, 1309, 1635, 1638, 1750
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
Ppu21I YACGTR 1 cut(s) 1772
PscI ACATGT 3 cut(s) 351, 864, 1758
PshBI ATTAAT 1 cut(s) 1766
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 1342
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 1332
PspPI GGNCC 1 cut(s) 1445
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 1168
RsaI GTAC 4 cut(s) 69, 869, 1599, 1834
RsaNI GTAC 4 cut(s) 68, 868, 1598, 1833
RseI CAYNNNNRTG 5 cut(s) 356, 401, 789, 953, 1515
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 1174
SatI GCNGC 6 cut(s) 1028, 1066, 1308, 1634, 1637, 1749
Sau3AI GATC 2 cut(s) 1168, 1471
Sau96I GGNCC 1 cut(s) 1445
ScaI AGTACT 1 cut(s) 69
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 2 cut(s) 173, 1706
SduI GDGCHC 4 cut(s) 114, 385, 898, 1121
SfaNI GCATC 6 cut(s) 463, 1024, 1212, 1228, 1274, 1507
SinI GGWCC 1 cut(s) 1445
SmiMI CAYNNNNRTG 5 cut(s) 356, 401, 789, 953, 1515
SnaBI TACGTA 1 cut(s) 1772
SseBI AGGCCT 1 cut(s) 771
SsiI CCGC 1 cut(s) 1496
SspI AATATT 1 cut(s) 418
SspMI CTAG 1 cut(s) 1185
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 171, 1704
TaaI ACNGT 6 cut(s) 12, 29, 67, 742, 872, 1144
TaiI ACGT 3 cut(s) 932, 1356, 1774
TaqI TCGA 2 cut(s) 587, 1273
TatI WGTACW 3 cut(s) 67, 867, 1597
TfiI GAWTC 5 cut(s) 254, 510, 592, 1275, 1315
TscAI CASTG 3 cut(s) 385, 809, 1519
TseFI GTSAC 2 cut(s) 526, 1643
TseI GCWGC 6 cut(s) 1027, 1065, 1307, 1633, 1636, 1748
Tsp45I GTSAC 2 cut(s) 526, 1643
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 3 cut(s) 385, 809, 1519
Van91I CCANNNNNTGG 1 cut(s) 1248
VpaK11BI GGWCC 1 cut(s) 1445
VspI ATTAAT 1 cut(s) 1766
XapI RAATTY 5 cut(s) 131, 214, 282, 430, 692
XceI RCATGY 4 cut(s) 98, 355, 868, 1762
XspI CTAG 1 cut(s) 1185
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.