Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01030 |
| fragaria_vesca | FvH4_7g16210 |
| malus_domestica | MD01G1078800.v1.1 |
| prunus_persica | Prupe.2G185700_v2.0.a1 Prupe.2G185700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0359241 |
| rosa_laevigata | RLG00000027892 |
| rosa_multiflora | Rmu_ssc0000135.1_g000027 |
| rosa_roxburghii | Rroxscaffold_4G00297210 |
| rosa_rugosa | Rorug01G0268800 |
| rosa_samantha | Rh1AG282600 Rh1BG249000 Rh1CG266700 Rh1DG277800 |
| rosa_wichuraiana | Rw1G025080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1010 |
| Acc36I | ACCTGC | 2 cut(s) | 1010, 1844 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1248 |
| AccII | CGCG | 1 cut(s) | 1723 |
| AciI | CCGC | 1 cut(s) | 1496 |
| AcoI | YGGCCR | 1 cut(s) | 1659 |
| AcsI | RAATTY | 5 cut(s) | 131, 214, 282, 430, 692 |
| AfaI | GTAC | 4 cut(s) | 69, 869, 1599, 1834 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 628, 1248, 1819 |
| AflIII | ACRYGT | 3 cut(s) | 351, 864, 1758 |
| AgsI | TTSAA | 8 cut(s) | 208, 219, 242, 457, 470, 889, 1217, 1538 |
| AjnI | CCWGG | 1 cut(s) | 171 |
| AleI | CACNNNNGTG | 1 cut(s) | 789 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 592, 624 |
| Alw21I | GWGCWC | 3 cut(s) | 114, 385, 1121 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 251 |
| AoxI | GGCC | 3 cut(s) | 174, 769, 1659 |
| ApeKI | GCWGC | 6 cut(s) | 1027, 1065, 1307, 1633, 1636, 1748 |
| ApoI | RAATTY | 5 cut(s) | 131, 214, 282, 430, 692 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1745, 1777 |
| AseI | ATTAAT | 1 cut(s) | 1766 |
| AspS9I | GGNCC | 1 cut(s) | 1445 |
| AsuC2I | CCSGG | 1 cut(s) | 1706 |
| AsuHPI | GGTGA | 5 cut(s) | 512, 803, 1447, 1720, 1802 |
| AvaII | GGWCC | 1 cut(s) | 1445 |
| BaeGI | GKGCMC | 1 cut(s) | 898 |
| BalI | TGGCCA | 1 cut(s) | 1661 |
| BanII | GRGCYC | 1 cut(s) | 114 |
| BbsI | GAAGAC | 1 cut(s) | 385 |
| Bbv12I | GWGCWC | 3 cut(s) | 114, 385, 1121 |
| BbvI | GCAGC | 6 cut(s) | 1039, 1052, 1319, 1620, 1623, 1760 |
| BccI | CCATC | 6 cut(s) | 185, 755, 906, 1089, 1383, 1790 |
| BceAI | ACGGC | 1 cut(s) | 497 |
| BciT130I | CCWGG | 1 cut(s) | 173 |
| BciVI | GTATCC | 4 cut(s) | 754, 824, 1455, 1811 |
| BclI | TGATCA | 1 cut(s) | 1471 |
| BcnI | CCSGG | 1 cut(s) | 1706 |
| BfaI | CTAG | 1 cut(s) | 1185 |
| BfuAI | ACCTGC | 2 cut(s) | 1010, 1844 |
| BfuI | GTATCC | 4 cut(s) | 754, 824, 1455, 1811 |
| BglII | AGATCT | 1 cut(s) | 1168 |
| BisI | GCNGC | 6 cut(s) | 1028, 1066, 1308, 1634, 1637, 1749 |
| BlsI | GCNGC | 6 cut(s) | 1029, 1067, 1309, 1635, 1638, 1750 |
| BmcAI | AGTACT | 1 cut(s) | 69 |
| Bme1390I | CCNGG | 2 cut(s) | 173, 1706 |
| Bme18I | GGWCC | 1 cut(s) | 1445 |
| BmgT120I | GGNCC | 1 cut(s) | 1445 |
| BmiI | GGNNCC | 1 cut(s) | 1332 |
| BmrFI | CCNGG | 2 cut(s) | 173, 1706 |
| BmsI | GCATC | 6 cut(s) | 463, 1024, 1212, 1228, 1274, 1507 |
| BpiI | GAAGAC | 1 cut(s) | 385 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1139, 1171 |
| BpuMI | CCSGG | 1 cut(s) | 1706 |
| BsaAI | YACGTR | 1 cut(s) | 1772 |
| BsaWI | WCCGGW | 1 cut(s) | 1803 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 668, 698, 1008, 1038 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 628, 1248, 1819 |
| Bse1I | ACTGG | 1 cut(s) | 378 |
| Bse3DI | GCAATG | 2 cut(s) | 564, 1846 |
| BseBI | CCWGG | 1 cut(s) | 173 |
| BseGI | GGATG | 6 cut(s) | 747, 1100, 1243, 1265, 1399, 1801 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 628, 1248, 1819 |
| BseMI | GCAATG | 2 cut(s) | 564, 1846 |
| BseMII | CTCAG | 1 cut(s) | 1089 |
| BseNI | ACTGG | 1 cut(s) | 378 |
| BseRI | GAGGAG | 1 cut(s) | 1029 |
| BseSI | GKGCMC | 1 cut(s) | 898 |
| BseXI | GCAGC | 6 cut(s) | 1039, 1052, 1319, 1620, 1623, 1760 |
| BseYI | CCCAGC | 1 cut(s) | 1342 |
| BsgI | GTGCAG | 2 cut(s) | 786, 1046 |
| Bsh1236I | CGCG | 1 cut(s) | 1723 |
| BshFI | GGCC | 3 cut(s) | 176, 771, 1661 |
| BsiHKAI | GWGCWC | 3 cut(s) | 114, 385, 1121 |
| BsiSI | CCGG | 3 cut(s) | 1235, 1705, 1804 |
| BslFI | GGGAC | 1 cut(s) | 153 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 628, 1248, 1819 |
| BsmFI | GGGAC | 1 cut(s) | 153 |
| BsnI | GGCC | 3 cut(s) | 176, 771, 1661 |
| Bsp1286I | GDGCHC | 4 cut(s) | 114, 385, 898, 1121 |
| Bsp1407I | TGTACA | 2 cut(s) | 867, 1597 |
| Bsp143I | GATC | 2 cut(s) | 1168, 1471 |
| BspACI | CCGC | 1 cut(s) | 1496 |
| BspANI | GGCC | 3 cut(s) | 176, 771, 1661 |
| BspCNI | CTCAG | 1 cut(s) | 1088 |
| BspFNI | CGCG | 1 cut(s) | 1723 |
| BspHI | TCATGA | 2 cut(s) | 1555, 1788 |
| BspLI | GGNNCC | 1 cut(s) | 1332 |
| BspMI | ACCTGC | 2 cut(s) | 1010, 1844 |
| BspQI | GCTCTTC | 1 cut(s) | 1174 |
| BsrDI | GCAATG | 2 cut(s) | 564, 1846 |
| BsrGI | TGTACA | 2 cut(s) | 867, 1597 |
| BsrI | ACTGG | 1 cut(s) | 378 |
| BssMI | GATC | 2 cut(s) | 1168, 1471 |
| Bst2UI | CCWGG | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 6 cut(s) | 12, 29, 67, 742, 872, 1144 |
| Bst6I | CTCTTC | 3 cut(s) | 153, 789, 1174 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 190, 734, 1304, 1845 |
| BstAUI | TGTACA | 2 cut(s) | 867, 1597 |
| BstBAI | YACGTR | 1 cut(s) | 1772 |
| BstC8I | GCNNGC | 3 cut(s) | 202, 769, 1659 |
| BstDEI | CTNAG | 4 cut(s) | 106, 523, 1075, 1640 |
| BstF5I | GGATG | 6 cut(s) | 747, 1100, 1243, 1265, 1399, 1801 |
| BstFNI | CGCG | 1 cut(s) | 1723 |
| BstKTI | GATC | 2 cut(s) | 1171, 1474 |
| BstMBI | GATC | 2 cut(s) | 1168, 1471 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 91, 173, 190, 734, 1231, 1262, 1304, 1845 |
| BstNI | CCWGG | 1 cut(s) | 173 |
| BstNSI | RCATGY | 4 cut(s) | 98, 355, 868, 1762 |
| BstSCI | CCNGG | 2 cut(s) | 171, 1704 |
| BstSLI | GKGCMC | 1 cut(s) | 898 |
| BstSNI | TACGTA | 1 cut(s) | 1772 |
| BstUI | CGCG | 1 cut(s) | 1723 |
| BstV1I | GCAGC | 6 cut(s) | 1039, 1052, 1319, 1620, 1623, 1760 |
| BstV2I | GAAGAC | 1 cut(s) | 385 |
| BstX2I | RGATCY | 1 cut(s) | 1168 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 1168 |
| BsuI | GTATCC | 4 cut(s) | 754, 824, 1455, 1811 |
| BsuRI | GGCC | 3 cut(s) | 176, 771, 1661 |
| BtsCI | GGATG | 6 cut(s) | 747, 1100, 1243, 1265, 1399, 1801 |
| BtsI | GCAGTG | 1 cut(s) | 802 |
| BtsIMutI | CAGTG | 3 cut(s) | 385, 802, 1512 |
| BveI | ACCTGC | 2 cut(s) | 1010, 1844 |
| Cac8I | GCNNGC | 3 cut(s) | 202, 769, 1659 |
| CaiI | CAGNNNCTG | 1 cut(s) | 251 |
| CciI | TCATGA | 2 cut(s) | 1555, 1788 |
| Cfr13I | GGNCC | 1 cut(s) | 1445 |
| CseI | GACGC | 2 cut(s) | 206, 1394 |
| Csp6I | GTAC | 4 cut(s) | 68, 868, 1598, 1833 |
| CviQI | GTAC | 4 cut(s) | 68, 868, 1598, 1833 |
| DdeI | CTNAG | 4 cut(s) | 106, 523, 1075, 1640 |
| DpnI | GATC | 2 cut(s) | 1170, 1473 |
| DpnII | GATC | 2 cut(s) | 1168, 1471 |
| EaeI | YGGCCR | 1 cut(s) | 1659 |
| Eam1104I | CTCTTC | 3 cut(s) | 153, 789, 1174 |
| EarI | CTCTTC | 3 cut(s) | 153, 789, 1174 |
| Ecl136II | GAGCTC | 1 cut(s) | 112 |
| Eco105I | TACGTA | 1 cut(s) | 1772 |
| Eco147I | AGGCCT | 1 cut(s) | 771 |
| Eco24I | GRGCYC | 1 cut(s) | 114 |
| Eco47I | GGWCC | 1 cut(s) | 1445 |
| Eco53kI | GAGCTC | 1 cut(s) | 112 |
| EcoICRI | GAGCTC | 1 cut(s) | 112 |
| EcoRI | GAATTC | 1 cut(s) | 430 |
| EcoRII | CCWGG | 1 cut(s) | 171 |
| EcoT38I | GRGCYC | 1 cut(s) | 114 |
| FaqI | GGGAC | 1 cut(s) | 153 |
| FauNDI | CATATG | 2 cut(s) | 160, 1485 |
| FbaI | TGATCA | 1 cut(s) | 1471 |
| Fnu4HI | GCNGC | 6 cut(s) | 1028, 1066, 1308, 1634, 1637, 1749 |
| FokI | GGATG | 6 cut(s) | 734, 1107, 1250, 1252, 1406, 1808 |
| FriOI | GRGCYC | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 6 cut(s) | 1028, 1066, 1308, 1634, 1637, 1749 |
| FspBI | CTAG | 1 cut(s) | 1185 |
| GluI | GCNGC | 6 cut(s) | 1028, 1066, 1308, 1634, 1637, 1749 |
| GsaI | CCCAGC | 1 cut(s) | 1346 |
| HaeIII | GGCC | 3 cut(s) | 176, 771, 1661 |
| HapII | CCGG | 3 cut(s) | 1235, 1705, 1804 |
| HgaI | GACGC | 2 cut(s) | 206, 1394 |
| HincII | GTYRAC | 1 cut(s) | 618 |
| HindII | GTYRAC | 1 cut(s) | 618 |
| HindIII | AAGCTT | 3 cut(s) | 579, 759, 1200 |
| HinfI | GANTC | 6 cut(s) | 254, 510, 592, 683, 1275, 1315 |
| HpaI | GTTAAC | 1 cut(s) | 618 |
| HpaII | CCGG | 3 cut(s) | 1235, 1705, 1804 |
| HphI | GGTGA | 5 cut(s) | 512, 803, 1447, 1720, 1802 |
| Hpy166II | GTNNAC | 5 cut(s) | 349, 618, 662, 1598, 1833 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 600, 818, 1605, 1735 |
| Hpy188III | TCNNGA | 7 cut(s) | 22, 265, 879, 1193, 1357, 1556, 1789 |
| Hpy8I | GTNNAC | 5 cut(s) | 349, 618, 662, 1598, 1833 |
| Hpy99I | CGWCG | 1 cut(s) | 592 |
| HpyCH4III | ACNGT | 6 cut(s) | 12, 29, 67, 742, 872, 1144 |
| HpyCH4IV | ACGT | 3 cut(s) | 929, 1353, 1771 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 91, 173, 190, 734, 1231, 1262, 1304, 1845 |
| HpyF3I | CTNAG | 4 cut(s) | 106, 523, 1075, 1640 |
| HpySE526I | ACGT | 3 cut(s) | 929, 1353, 1771 |
| Ksp22I | TGATCA | 1 cut(s) | 1471 |
| KspAI | GTTAAC | 1 cut(s) | 618 |
| Kzo9I | GATC | 2 cut(s) | 1168, 1471 |
| LguI | GCTCTTC | 1 cut(s) | 1174 |
| LmnI | GCTCC | 5 cut(s) | 227, 1016, 1141, 1402, 1455 |
| Lsp1109I | GCAGC | 6 cut(s) | 1039, 1052, 1319, 1620, 1623, 1760 |
| LweI | GCATC | 6 cut(s) | 463, 1024, 1212, 1228, 1274, 1507 |
| MaeI | CTAG | 1 cut(s) | 1185 |
| MaeII | ACGT | 3 cut(s) | 929, 1353, 1771 |
| MaeIII | GTNAC | 3 cut(s) | 247, 526, 1643 |
| MalI | GATC | 2 cut(s) | 1170, 1473 |
| MboI | GATC | 2 cut(s) | 1168, 1471 |
| MfeI | CAATTG | 2 cut(s) | 74, 367 |
| MflI | RGATCY | 1 cut(s) | 1168 |
| MhlI | GDGCHC | 4 cut(s) | 114, 385, 898, 1121 |
| MlsI | TGGCCA | 1 cut(s) | 1661 |
| MluNI | TGGCCA | 1 cut(s) | 1661 |
| MlyI | GAGTC | 1 cut(s) | 677 |
| MmeI | TCCRAC | 2 cut(s) | 1163, 1308 |
| Mox20I | TGGCCA | 1 cut(s) | 1661 |
| MscI | TGGCCA | 1 cut(s) | 1661 |
| MslI | CAYNNNNRTG | 5 cut(s) | 356, 401, 789, 953, 1515 |
| Msp20I | TGGCCA | 1 cut(s) | 1661 |
| MspI | CCGG | 3 cut(s) | 1235, 1705, 1804 |
| MspR9I | CCNGG | 2 cut(s) | 173, 1706 |
| MunI | CAATTG | 2 cut(s) | 74, 367 |
| MvaI | CCWGG | 1 cut(s) | 173 |
| MvnI | CGCG | 1 cut(s) | 1723 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 91, 173, 190, 734, 1231, 1262, 1304, 1845 |
| NciI | CCSGG | 1 cut(s) | 1706 |
| NdeI | CATATG | 2 cut(s) | 160, 1485 |
| NdeII | GATC | 2 cut(s) | 1168, 1471 |
| NlaIV | GGNNCC | 1 cut(s) | 1332 |
| NmuCI | GTSAC | 2 cut(s) | 526, 1643 |
| NspI | RCATGY | 4 cut(s) | 98, 355, 868, 1762 |
| OliI | CACNNNNGTG | 1 cut(s) | 789 |
| PagI | TCATGA | 2 cut(s) | 1555, 1788 |
| PaqCI | CACCTGC | 1 cut(s) | 1010 |
| PceI | AGGCCT | 1 cut(s) | 771 |
| PciI | ACATGT | 3 cut(s) | 351, 864, 1758 |
| PciSI | GCTCTTC | 1 cut(s) | 1174 |
| PfeI | GAWTC | 5 cut(s) | 254, 510, 592, 1275, 1315 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1248 |
| PkrI | GCNGC | 6 cut(s) | 1029, 1067, 1309, 1635, 1638, 1750 |
| PleI | GAGTC | 1 cut(s) | 677 |
| PpsI | GAGTC | 1 cut(s) | 677 |
| Ppu21I | YACGTR | 1 cut(s) | 1772 |
| PscI | ACATGT | 3 cut(s) | 351, 864, 1758 |
| PshBI | ATTAAT | 1 cut(s) | 1766 |
| Psp124BI | GAGCTC | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 171 |
| PspFI | CCCAGC | 1 cut(s) | 1342 |
| PspGI | CCWGG | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 1 cut(s) | 1332 |
| PspPI | GGNCC | 1 cut(s) | 1445 |
| PstNI | CAGNNNCTG | 1 cut(s) | 251 |
| PsuI | RGATCY | 1 cut(s) | 1168 |
| RsaI | GTAC | 4 cut(s) | 69, 869, 1599, 1834 |
| RsaNI | GTAC | 4 cut(s) | 68, 868, 1598, 1833 |
| RseI | CAYNNNNRTG | 5 cut(s) | 356, 401, 789, 953, 1515 |
| SacI | GAGCTC | 1 cut(s) | 114 |
| SapI | GCTCTTC | 1 cut(s) | 1174 |
| SatI | GCNGC | 6 cut(s) | 1028, 1066, 1308, 1634, 1637, 1749 |
| Sau3AI | GATC | 2 cut(s) | 1168, 1471 |
| Sau96I | GGNCC | 1 cut(s) | 1445 |
| ScaI | AGTACT | 1 cut(s) | 69 |
| SchI | GAGTC | 1 cut(s) | 677 |
| ScrFI | CCNGG | 2 cut(s) | 173, 1706 |
| SduI | GDGCHC | 4 cut(s) | 114, 385, 898, 1121 |
| SfaNI | GCATC | 6 cut(s) | 463, 1024, 1212, 1228, 1274, 1507 |
| SinI | GGWCC | 1 cut(s) | 1445 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 356, 401, 789, 953, 1515 |
| SnaBI | TACGTA | 1 cut(s) | 1772 |
| SseBI | AGGCCT | 1 cut(s) | 771 |
| SsiI | CCGC | 1 cut(s) | 1496 |
| SspI | AATATT | 1 cut(s) | 418 |
| SspMI | CTAG | 1 cut(s) | 1185 |
| SstI | GAGCTC | 1 cut(s) | 114 |
| StuI | AGGCCT | 1 cut(s) | 771 |
| StyD4I | CCNGG | 2 cut(s) | 171, 1704 |
| TaaI | ACNGT | 6 cut(s) | 12, 29, 67, 742, 872, 1144 |
| TaiI | ACGT | 3 cut(s) | 932, 1356, 1774 |
| TaqI | TCGA | 2 cut(s) | 587, 1273 |
| TatI | WGTACW | 3 cut(s) | 67, 867, 1597 |
| TfiI | GAWTC | 5 cut(s) | 254, 510, 592, 1275, 1315 |
| TscAI | CASTG | 3 cut(s) | 385, 809, 1519 |
| TseFI | GTSAC | 2 cut(s) | 526, 1643 |
| TseI | GCWGC | 6 cut(s) | 1027, 1065, 1307, 1633, 1636, 1748 |
| Tsp45I | GTSAC | 2 cut(s) | 526, 1643 |
| TspGWI | ACGGA | 1 cut(s) | 695 |
| TspRI | CASTG | 3 cut(s) | 385, 809, 1519 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1248 |
| VpaK11BI | GGWCC | 1 cut(s) | 1445 |
| VspI | ATTAAT | 1 cut(s) | 1766 |
| XapI | RAATTY | 5 cut(s) | 131, 214, 282, 430, 692 |
| XceI | RCATGY | 4 cut(s) | 98, 355, 868, 1762 |
| XspI | CTAG | 1 cut(s) | 1185 |
| ZrmI | AGTACT | 1 cut(s) | 69 |